SysMO-DB/seek

Function imageSwapZoomOut has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        function imageSwapZoomOut(curImage, newImage) {
            $(curImage).css({'opacity':'1'});
            $(newImage).css({'opacity':'0'});
            $(newImage).css({'height':'250%', 'marginLeft':'-120px', 'marginTop':'-222px'});
            $(curImage).css({'display':'inline'});

Method to_presentation has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def to_presentation
    presentation_attrs = attributes.delete_if { |k, v| !(::Presentation.new.attributes.include?(k))}

    Presentation.new(presentation_attrs).tap do |presentation|
      DataFile.reflect_on_all_associations.select { |a| [:has_many, :has_and_belongs_to_many, :has_one].include?(a.macro) && !a.through_reflection }.each do |a|

Function tipShow has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    tipShow : function() {        
        var scrX = Number(this.xCord);
        var scrY = Number(this.yCord);
        var tp = parseInt(scrY+15);
        var lt = parseInt(scrX+10);

Function imageSwapZoomIn has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        function imageSwapZoomIn(curImage, newImage) {
            $(curImage).css({'opacity':'1'});
            $(newImage).css({'opacity':'0'});
            $(newImage).css({'height':'25%', 'marginLeft':'200px', 'marginTop':'105px'});
            $(curImage).css({'display':'inline'});

Method create_or_update_attributions has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def self.create_or_update_attributions(resource, attributions_from_params, predicate = Relationship::ATTRIBUTED_TO)

    # added this branching on .nil? because of the danger of loosing all attributions for a model (for example) if due to an incomplete post request attributions is nil
    # the former code interpreted a nil parameter as an empty list => remove all attributions from an asset
    unless attributions_from_params.nil?

Method set_runlet_parameters has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def set_runlet_parameters

    shared_input_values_for_all_runs = params[:sweep].delete(:shared_input_values_for_all_runs)
    params[:sweep][:runs_attributes].each_with_index do |(run_id, run_attributes), iteration_index|
      run_attributes[:workflow_id] = params[:sweep][:workflow_id]

Method new_object_based_on_existing_one has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def new_object_based_on_existing_one
    @existing_sample =  Sample.find(params[:id])
    @sample = @existing_sample.clone_with_associations

    unless @sample.specimen.can_view?

Method create has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def create    

    if handle_upload_data
      @sop = Sop.new(params[:sop])
      @sop.policy.set_attributes_with_sharing params[:sharing], @sop.projects

Method get_compound_annotation has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    def get_compound_annotation compound_name
      url=URI.encode(webservice_base_url + "compounds?compoundName=")
      compound_name = URI.escape(compound_name, Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))
      url.concat(compound_name)
      doc = get_xml_doc url

Method update_params_for_batch has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      def update_params_for_batch(params)
        data = []
        data_urls = []
        original_filenames = []
        make_local_copy = []

Method url_response_code has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      def url_response_code asset_url
        url = URI.parse(URI.encode(asset_url.strip))
        code=""
        begin
          if (["http","https"].include?(url.scheme))

Method fix_file_extensions has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

def fix_file_extensions(run)
  Dir.mktmpdir("#{run.id}", Rails.root.join("tmp")) do |tmp_dir|
    tmp_zip = File.join(tmp_dir, "all.zip")
    Zip::File.open(run.results.path) do |old_zip|
      Zip::File.open(tmp_zip, Zip::File::CREATE) do |new_zip|

Method get_contents has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def get_contents uri,user,password,recursive=false
   
    found=[]

    content = propfind uri,user,password,1

Similar blocks of code found in 4 locations. Consider refactoring.

Open

  this.SetCurrentWidth2 = function(value)
  {
    value = parseInt(value);
    if(isNaN(value))
      value = 0;

• Read up
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Similar blocks of code found in 4 locations. Consider refactoring.

Open

  this.SetCurrentHeight = function(value)
  {
    value = parseInt(value);
    if(isNaN(value))
      value = 0;

• Read up
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Similar blocks of code found in 4 locations. Consider refactoring.

Open

  this.SetCurrentHeight = function(value)
  {
    value = parseInt(value);
    if(isNaN(value))
      value = 0;

• Read up
  Read up

Similar blocks of code found in 4 locations. Consider refactoring.

Open

  this.SetCurrentWidth = function(value)
  {
    value = parseInt(value);
    if(isNaN(value))
      value = 0;

• Read up
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Function additionalFieldForItem has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function additionalFieldForItem(form_id, fs_or_ec_id){
    var elements =  $(form_id).getElements();
    var item;
    var substance_autocomplete;
    for (var i=0;i<elements.length;i++)

Function relativeRows has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function relativeRows(minRow, maxRow, sheetNumber){
    var current_page = null;
    if (sheetNumber != null)
        current_page = currentPage(sheetNumber);

Function check_show_existing_items has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function check_show_existing_items(organism_element_id, existing_items_element_id, url) {
    var selected_ids = $F(organism_element_id).join();
    if (selected_ids == '0') {
        if ($(existing_items_element_id + "_spinner") != null)
            Effect.Fade(existing_items_element_id + "_spinner");