bio-miga/miga

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Do not introduce global variables.
Open

    assert_equal(2, $counter)
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops looks for uses of global variables. It does not report offenses for built-in global variables. Built-in global variables are allowed by default. Additionally users can allow additional variables via the AllowedVariables option.

Note that backreferences like $1, $2, etc are not global variables.

Example:

# bad
$foo = 2
bar = $foo + 5

# good
FOO = 2
foo = 2
$stdin.read

Add parentheses to nested method call MiGA::Taxonomy.normalize_rank 'Captain'.
Open

    assert_nil(MiGA::Taxonomy.normalize_rank 'Captain')
Severity: Minor
Found in test/taxonomy_test.rb by rubocop

This cop checks for unparenthesized method calls in the argument list of a parenthesized method call.

Example:

# good
method1(method2(arg), method3(arg))

# bad
method1(method2 arg, method3, arg)

Avoid the use of Perl-style backrefs.
Open

      data[$1.to_sym]&.fetch($2)
Severity: Minor
Found in lib/miga/metadata.rb by rubocop

This cop looks for uses of Perl-style regexp match backreferences like $1, $2, etc.

Example:

# bad
puts $1

# good
puts Regexp.last_match(1)

Use a guard clause instead of wrapping the code inside a conditional expression.
Open

    if expect_files
Severity: Minor
Found in lib/miga/cli.rb by rubocop

Use a guard clause instead of wrapping the code inside a conditional expression

Example:

# bad
def test
  if something
    work
  end
end

# good
def test
  return unless something
  work
end

# also good
def test
  work if something
end

# bad
if something
  raise 'exception'
else
  ok
end

# good
raise 'exception' if something
ok

Missing magic comment # frozen_string_literal: true.
Open

require 'test_helper'
Severity: Minor
Found in test/result_test.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Add parentheses to nested method call a[0].is_a? Array.
Open

    assert(a[0].is_a? Array)
Severity: Minor
Found in test/result_test.rb by rubocop

This cop checks for unparenthesized method calls in the argument list of a parenthesized method call.

Example:

# good
method1(method2(arg), method3(arg))

# bad
method1(method2 arg, method3, arg)

Use proc instead of Proc.new.
Open

    dataset.add_hook(:on_save, :run_lambda, Proc.new { $counter += 1 })
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops checks for uses of Proc.new where Kernel#proc would be more appropriate.

Example:

# bad
p = Proc.new { |n| puts n }

# good
p = proc { |n| puts n }

Missing magic comment # frozen_string_literal: true.
Open

require 'test_helper'
Severity: Minor
Found in test/taxonomy_test.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Method MiGA::Cli#defaults= is defined at both lib/miga/cli.rb:63 and lib/miga/cli.rb:151.
Open

  def defaults=(hsh)
Severity: Minor
Found in lib/miga/cli.rb by rubocop

This cop checks for duplicated instance (or singleton) method definitions.

Example:

# bad

def duplicated
  1
end

def duplicated
  2
end

Example:

# bad

def duplicated
  1
end

alias duplicated other_duplicated

Example:

# good

def duplicated
  1
end

def other_duplicated
  2
end

Space found before semicolon.
Open

    out = capture_stderr { lair.terminate_daemons ; sleep(2) }.string
Severity: Minor
Found in test/lair_test.rb by rubocop

Checks for semicolon (;) preceded by space.

Example:

# bad
x = 1 ; y = 2

# good
x = 1; y = 2

Do not introduce global variables.
Open

    dataset.add_hook(:on_result_ready, :run_lambda, Proc.new { |r| $res = r })
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops looks for uses of global variables. It does not report offenses for built-in global variables. Built-in global variables are allowed by default. Additionally users can allow additional variables via the AllowedVariables option.

Note that backreferences like $1, $2, etc are not global variables.

Example:

# bad
$foo = 2
bar = $foo + 5

# good
FOO = 2
foo = 2
$stdin.read

Do not introduce global variables.
Open

    assert_equal(:trimmed_reads, $res)
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops looks for uses of global variables. It does not report offenses for built-in global variables. Built-in global variables are allowed by default. Additionally users can allow additional variables via the AllowedVariables option.

Note that backreferences like $1, $2, etc are not global variables.

Example:

# bad
$foo = 2
bar = $foo + 5

# good
FOO = 2
foo = 2
$stdin.read

Use proc instead of Proc.new.
Open

      Proc.new { |r| $res = r }
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops checks for uses of Proc.new where Kernel#proc would be more appropriate.

Example:

# bad
p = Proc.new { |n| puts n }

# good
p = proc { |n| puts n }

Missing magic comment # frozen_string_literal: true.
Open

require 'test_helper'
Severity: Minor
Found in test/daemon_test.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Do not introduce global variables.
Open

      :on_result_ready_trimmed_reads, :run_lambda, Proc.new { $counter += 1 }
Severity: Minor
Found in test/hook_test.rb by rubocop

This cops looks for uses of global variables. It does not report offenses for built-in global variables. Built-in global variables are allowed by default. Additionally users can allow additional variables via the AllowedVariables option.

Note that backreferences like $1, $2, etc are not global variables.

Example:

# bad
$foo = 2
bar = $foo + 5

# good
FOO = 2
foo = 2
$stdin.read

Missing magic comment # frozen_string_literal: true.
Open

require 'test_helper'
Severity: Minor
Found in test/metadata_test.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Favor modifier if usage when having a single-line body. Another good alternative is the usage of control flow &&/||.
Open

    if expect_files
Severity: Minor
Found in lib/miga/cli.rb by rubocop

Checks for if and unless statements that would fit on one line if written as a modifier if/unless. The maximum line length is configured in the Metrics/LineLength cop.

Example:

# bad
if condition
  do_stuff(bar)
end

unless qux.empty?
  Foo.do_something
end

# good
do_stuff(bar) if condition
Foo.do_something unless qux.empty?

Redundant curly braces around a hash parameter.
Open

    tx = JSON.parse(js, { symbolize_names: false, create_additions: true })
Severity: Minor
Found in test/taxonomy_test.rb by rubocop

This cop checks for braces around the last parameter in a method call if the last parameter is a hash. It supports braces, no_braces and context_dependent styles.

Example: EnforcedStyle: braces

# The `braces` style enforces braces around all method
# parameters that are hashes.

# bad
some_method(x, y, a: 1, b: 2)

# good
some_method(x, y, {a: 1, b: 2})

Example: EnforcedStyle: no_braces (default)

# The `no_braces` style checks that the last parameter doesn't
# have braces around it.

# bad
some_method(x, y, {a: 1, b: 2})

# good
some_method(x, y, a: 1, b: 2)

Example: EnforcedStyle: context_dependent

# The `context_dependent` style checks that the last parameter
# doesn't have braces around it, but requires braces if the
# second to last parameter is also a hash literal.

# bad
some_method(x, y, {a: 1, b: 2})
some_method(x, y, {a: 1, b: 2}, a: 1, b: 2)

# good
some_method(x, y, a: 1, b: 2)
some_method(x, y, {a: 1, b: 2}, {a: 1, b: 2})

Redundant self detected.
Open

    self.load if @data.nil?
Severity: Minor
Found in lib/miga/metadata.rb by rubocop

This cop checks for redundant uses of self.

The usage of self is only needed when:

  • Sending a message to same object with zero arguments in presence of a method name clash with an argument or a local variable.

  • Calling an attribute writer to prevent an local variable assignment.

Note, with using explicit self you can only send messages with public or protected scope, you cannot send private messages this way.

Note we allow uses of self with operators because it would be awkward otherwise.

Example:

# bad
def foo(bar)
  self.baz
end

# good
def foo(bar)
  self.bar  # Resolves name clash with the argument.
end

def foo
  bar = 1
  self.bar  # Resolves name clash with the local variable.
end

def foo
  %w[x y z].select do |bar|
    self.bar == bar  # Resolves name clash with argument of the block.
  end
end
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