bio-miga/miga

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Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga/cli/action/edit.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Put empty method definitions on a single line.
Open

  def empty_action
  end
Severity: Minor
Found in lib/miga/cli/action/console.rb by rubocop

This cop checks for the formatting of empty method definitions. By default it enforces empty method definitions to go on a single line (compact style), but it can be configured to enforce the end to go on its own line (expanded style).

Note: A method definition is not considered empty if it contains comments.

Example: EnforcedStyle: compact (default)

# bad
def foo(bar)
end

def self.foo(bar)
end

# good
def foo(bar); end

def foo(bar)
  # baz
end

def self.foo(bar); end

Example: EnforcedStyle: expanded

# bad
def foo(bar); end

def self.foo(bar); end

# good
def foo(bar)
end

def self.foo(bar)
end

Avoid the use of double negation (!!).
Open

    !!metadata["run_#{task}"]
Severity: Minor
Found in lib/miga/dataset/result/ignore.rb by rubocop

This cop checks for uses of double negation (!!) to convert something to a boolean value. As this is both cryptic and usually redundant, it should be avoided.

Example:

# bad
!!something

# good
!something.nil?

Please, note that when something is a boolean value !!something and !something.nil? are not the same thing. As you're unlikely to write code that can accept values of any type this is rarely a problem in practice.

Missing magic comment # frozen_string_literal: true.
Open

require 'miga/common/hooks'
Severity: Minor
Found in lib/miga/dataset/hooks.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Use snake_case for method names.
Open

    def PREPROCESSING_TASKS
Severity: Minor
Found in lib/miga/dataset/base.rb by rubocop

This cop makes sure that all methods use the configured style, snake_case or camelCase, for their names.

Example: EnforcedStyle: snake_case (default)

# bad
def fooBar; end

# good
def foo_bar; end

Example: EnforcedStyle: camelCase

# bad
def foo_bar; end

# good
def fooBar; end

Missing top-level class documentation comment.
Open

class MiGA::Cli::Action::NextStep < MiGA::Cli::Action
Severity: Minor
Found in lib/miga/cli/action/next_step.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Ternary operators must not be nested. Prefer if or else constructs instead.
Open

      stats.map { |s| keys.map { |k| s[k].is_a?(Array) ? s[k].first : s[k] } }
Severity: Minor
Found in lib/miga/cli/action/summary.rb by rubocop

Use safe navigation (&.) instead of checking if an object exists before calling the method.
Open

    @ftp.close unless @ftp.nil?
Severity: Minor
Found in lib/miga/cli/action/db.rb by rubocop

This cop transforms usages of a method call safeguarded by a non nil check for the variable whose method is being called to safe navigation (&.).

Configuration option: ConvertCodeThatCanStartToReturnNil The default for this is false. When configured to true, this will check for code in the format !foo.nil? && foo.bar. As it is written, the return of this code is limited to false and whatever the return of the method is. If this is converted to safe navigation, foo&.bar can start returning nil as well as what the method returns.

Example:

# bad
foo.bar if foo
foo.bar(param1, param2) if foo
foo.bar { |e| e.something } if foo
foo.bar(param) { |e| e.something } if foo

foo.bar if !foo.nil?
foo.bar unless !foo
foo.bar unless foo.nil?

foo && foo.bar
foo && foo.bar(param1, param2)
foo && foo.bar { |e| e.something }
foo && foo.bar(param) { |e| e.something }

# good
foo&.bar
foo&.bar(param1, param2)
foo&.bar { |e| e.something }
foo&.bar(param) { |e| e.something }

foo.nil? || foo.bar
!foo || foo.bar

# Methods that `nil` will `respond_to?` should not be converted to
# use safe navigation
foo.to_i if foo

Missing magic comment # frozen_string_literal: true.
Open

##
Severity: Minor
Found in lib/miga/dataset/status.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Avoid using {...} for multi-line blocks.
Open

      stats.map { |s|
Severity: Minor
Found in lib/miga/cli/action/summary.rb by rubocop

Check for uses of braces or do/end around single line or multi-line blocks.

Example: EnforcedStyle: linecountbased (default)

# bad - single line block
items.each do |item| item / 5 end

# good - single line block
items.each { |item| item / 5 }

# bad - multi-line block
things.map { |thing|
  something = thing.some_method
  process(something)
}

# good - multi-line block
things.map do |thing|
  something = thing.some_method
  process(something)
end

Example: EnforcedStyle: semantic

# Prefer `do...end` over `{...}` for procedural blocks.

# return value is used/assigned
# bad
foo = map do |x|
  x
end
puts (map do |x|
  x
end)

# return value is not used out of scope
# good
map do |x|
  x
end

# Prefer `{...}` over `do...end` for functional blocks.

# return value is not used out of scope
# bad
each { |x|
  x
}

# return value is used/assigned
# good
foo = map { |x|
  x
}
map { |x|
  x
}.inspect

Example: EnforcedStyle: bracesforchaining

# bad
words.each do |word|
  word.flip.flop
end.join("-")

# good
words.each { |word|
  word.flip.flop
}.join("-")

Ternary operators must not be nested. Prefer if or else constructs instead.
Open

          .map { |k| s[k].is_a?(Array) ? s[k].map(&:to_s).join('') : s[k] }
Severity: Minor
Found in lib/miga/cli/action/summary.rb by rubocop

Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga/cli/action/rm.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Do not use semicolons to terminate expressions.
Open

      ) { |v| cli[:activate] = false ; cli[:reason] = v }
Severity: Minor
Found in lib/miga/cli/action/edit.rb by rubocop

This cop checks for multiple expressions placed on the same line. It also checks for lines terminated with a semicolon.

Example:

# bad
foo = 1; bar = 2;
baz = 3;

# good
foo = 1
bar = 2
baz = 3

Do not use semicolons to terminate expressions.
Open

      ) { |v| puts MiGA::MiGA.CITATION; exit }
Severity: Minor
Found in lib/miga/cli/action/generic.rb by rubocop

This cop checks for multiple expressions placed on the same line. It also checks for lines terminated with a semicolon.

Example:

# bad
foo = 1; bar = 2;
baz = 3;

# good
foo = 1
bar = 2
baz = 3

Missing top-level module documentation comment.
Open

module MiGA::Dataset::Result::Add
Severity: Minor
Found in lib/miga/dataset/result/add.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Provide an exception class and message as arguments to raise.
Open

      raise MiGA::Error.new("Unknown dataset type: #{type}")
Severity: Minor
Found in lib/miga/dataset/type.rb by rubocop

This cop checks the args passed to fail and raise. For exploded style (default), it recommends passing the exception class and message to raise, rather than construct an instance of the error. It will still allow passing just a message, or the construction of an error with more than one argument.

The exploded style works identically, but with the addition that it will also suggest constructing error objects when the exception is passed multiple arguments.

Example: EnforcedStyle: exploded (default)

# bad
raise StandardError.new("message")

# good
raise StandardError, "message"
fail "message"
raise MyCustomError.new(arg1, arg2, arg3)
raise MyKwArgError.new(key1: val1, key2: val2)

Example: EnforcedStyle: compact

# bad
raise StandardError, "message"
raise RuntimeError, arg1, arg2, arg3

# good
raise StandardError.new("message")
raise MyCustomError.new(arg1, arg2, arg3)
fail "message"

Use snake_case for method names.
Open

    def EXCLUDE_NOREF_TASKS
Severity: Minor
Found in lib/miga/dataset/base.rb by rubocop

This cop makes sure that all methods use the configured style, snake_case or camelCase, for their names.

Example: EnforcedStyle: snake_case (default)

# bad
def fooBar; end

# good
def foo_bar; end

Example: EnforcedStyle: camelCase

# bad
def foo_bar; end

# good
def fooBar; end

Extra empty line detected at class body end.
Open


end
Severity: Minor
Found in lib/miga/cli/action/seqcode_get.rb by rubocop

This cops checks if empty lines around the bodies of classes match the configuration.

Example: EnforcedStyle: empty_lines

# good

class Foo

  def bar
    # ...
  end

end

Example: EnforcedStyle: emptylinesexcept_namespace

# good

class Foo
  class Bar

    # ...

  end
end

Example: EnforcedStyle: emptylinesspecial

# good
class Foo

  def bar; end

end

Example: EnforcedStyle: noemptylines (default)

# good

class Foo
  def bar
    # ...
  end
end

Prefer single-quoted strings when you don't need string interpolation or special symbols.
Open

    cli.say "Registering database locally"
Severity: Minor
Found in lib/miga/cli/action/db.rb by rubocop

Checks if uses of quotes match the configured preference.

Example: EnforcedStyle: single_quotes (default)

# bad
"No special symbols"
"No string interpolation"
"Just text"

# good
'No special symbols'
'No string interpolation'
'Just text'
"Wait! What's #{this}!"

Example: EnforcedStyle: double_quotes

# bad
'Just some text'
'No special chars or interpolation'

# good
"Just some text"
"No special chars or interpolation"
"Every string in #{project} uses double_quotes"

Favor modifier until usage when having a single-line body.
Open

      until fh.eof?
Severity: Minor
Found in lib/miga/cli/action/db.rb by rubocop

Checks for while and until statements that would fit on one line if written as a modifier while/until. The maximum line length is configured in the Metrics/LineLength cop.

Example:

# bad
while x < 10
  x += 1
end

# good
x += 1 while x < 10

Example:

# bad
until x > 10
  x += 1
end

# good
x += 1 until x > 10
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