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lib/miga/cli/action/init/files_helper.rb

Summary

Maintainability
A
0 mins
Test Coverage

Module has too many lines. [107/100]
Open

module MiGA::Cli::Action::Init::FilesHelper
  def open_rc_file
    rc_path = File.expand_path('.miga_rc', ENV['MIGA_HOME'])
    if File.exist? rc_path
      if cli.ask_user(
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks if the length a module exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for check_configuration_script is too high. [26.25/15]
Open

  def check_configuration_script(rc_fh)
    unless File.exist? cli[:config]
      cli[:config] = cli.ask_user(
        'Is there a script I need to load at startup?',
        cli[:config]
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [20/10]
Open

  def check_rdp_classifier
    cli.print 'Looking for RDP classifier... '
    miga_db = File.join(ENV['MIGA_HOME'], '.miga_db')
    file = 'classifier.jar'
    path = File.join(miga_db, file)
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [19/10]
Open

  def check_mytaxa_database(paths)
    cli.print 'Looking for MyTaxa DB... '
    mt = File.dirname(paths['MyTaxa'])
    dmnd_db = 'AllGenomes.faa.dmnd'
    miga_db = File.join(ENV['MIGA_HOME'], '.miga_db')
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for check_mytaxa_database is too high. [23.62/15]
Open

  def check_mytaxa_database(paths)
    cli.print 'Looking for MyTaxa DB... '
    mt = File.dirname(paths['MyTaxa'])
    dmnd_db = 'AllGenomes.faa.dmnd'
    miga_db = File.join(ENV['MIGA_HOME'], '.miga_db')
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Assignment Branch Condition size for check_rdp_classifier is too high. [21.61/15]
Open

  def check_rdp_classifier
    cli.print 'Looking for RDP classifier... '
    miga_db = File.join(ENV['MIGA_HOME'], '.miga_db')
    file = 'classifier.jar'
    path = File.join(miga_db, file)
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [15/10]
Open

  def check_configuration_script(rc_fh)
    unless File.exist? cli[:config]
      cli[:config] = cli.ask_user(
        'Is there a script I need to load at startup?',
        cli[:config]
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [14/10]
Open

  def open_rc_file
    rc_path = File.expand_path('.miga_rc', ENV['MIGA_HOME'])
    if File.exist? rc_path
      if cli.ask_user(
        'I found a previous configuration. Do you want to continue?',
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

%w-literals should be delimited by [ and ].
Open

        'yes', %w(yes no)
Severity: Minor
Found in lib/miga/cli/action/init/files_helper.rb by rubocop

This cop enforces the consistent usage of %-literal delimiters.

Specify the 'default' key to set all preferred delimiters at once. You can continue to specify individual preferred delimiters to override the default.

Example:

# Style/PercentLiteralDelimiters:
#   PreferredDelimiters:
#     default: '[]'
#     '%i':    '()'

# good
%w[alpha beta] + %i(gamma delta)

# bad
%W(alpha #{beta})

# bad
%I(alpha beta)

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