bio-miga/miga

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lib/miga/cli/opt_helper.rb

Summary

Maintainability
C
7 hrs
Test Coverage

Module has too many lines. [132/100]
Open

module MiGA::Cli::OptHelper
  ##
  # Send MiGA's banner to OptionParser +opt+
  def banner(opt)
    usage = "Usage: miga #{action.name}"
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length a module exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [46/10]
Open

  def opt_object(opt, what = %i[project dataset])
    what.each do |w|
      case w
      when :project
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [39/10]
Open

  def opt_filter_datasets(opt, what = %i[ref multi markers active taxonomy])
    what.each do |w|
      case w
      when :ref
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for opt_object is too high. [41.98/15]
Open

  def opt_object(opt, what = %i[project dataset])
    what.each do |w|
      case w
      when :project
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [28/10]
Open

  def opt_common(opt)
    return unless @opt_common

    if interactive
      opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Cyclomatic complexity for opt_object is too high. [10/6]
Open

  def opt_object(opt, what = %i[project dataset])
    what.each do |w|
      case w
      when :project
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks that the cyclomatic complexity of methods is not higher than the configured maximum. The cyclomatic complexity is the number of linearly independent paths through a method. The algorithm counts decision points and adds one.

An if statement (or unless or ?:) increases the complexity by one. An else branch does not, since it doesn't add a decision point. The && operator (or keyword and) can be converted to a nested if statement, and ||/or is shorthand for a sequence of ifs, so they also add one. Loops can be said to have an exit condition, so they add one.

Method opt_object has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.
Open

  def opt_object(opt, what = %i[project dataset])
    what.each do |w|
      case w
      when :project
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Block has too many lines. [44/25]
Open

    what.each do |w|
      case w
      when :project
        opt.on(
          '-P', '--project PATH',
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length of a block exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable. The cop can be configured to ignore blocks passed to certain methods.

Method opt_object has 46 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def opt_object(opt, what = %i[project dataset])
    what.each do |w|
      case w
      when :project
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb - About 1 hr to fix

Assignment Branch Condition size for opt_common is too high. [16.55/15]
Open

  def opt_common(opt)
    return unless @opt_common

    if interactive
      opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method opt_filter_datasets has 39 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def opt_filter_datasets(opt, what = %i[ref multi markers active taxonomy])
    what.each do |w|
      case w
      when :ref
        opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb - About 1 hr to fix

Method opt_common has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def opt_common(opt)
    return unless @opt_common

    if interactive
      opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb - About 1 hr to fix

Block has too many lines. [29/25]
Open

    what.each do |w|
      case w
      when :ref
        opt.on(
          '--[no-]ref',
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks if the length of a block exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable. The cop can be configured to ignore blocks passed to certain methods.

Method opt_common has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  def opt_common(opt)
    return unless @opt_common

    if interactive
      opt.on(
Severity: Minor
Found in lib/miga/cli/opt_helper.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

      when :result_dataset
        opt.on(
          '-r', '--result STRING',
          '(Mandatory) Name of the result, one of:',
          *MiGA::Dataset.RESULT_DIRS.keys.map { |n| " ~ #{n}" }
Severity: Minor
Found in lib/miga/cli/opt_helper.rb and 1 other location - About 20 mins to fix
lib/miga/cli/opt_helper.rb on lines 106..111

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 27.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

      when :result_project
        opt.on(
          '-r', '--result STRING',
          '(Mandatory) Name of the result, one of:',
          *MiGA::Project.RESULT_DIRS.keys.map { |n| " ~ #{n}" }
Severity: Minor
Found in lib/miga/cli/opt_helper.rb and 1 other location - About 20 mins to fix
lib/miga/cli/opt_helper.rb on lines 100..105

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 27.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Parenthesize the param opt.to_a.select { |i| i !~ /\s::HIDE::\s/ } to make sure that the block will be associated with the opt.to_a.select method call.
Open

      puts opt.to_a.select { |i| i !~ /\s::HIDE::\s/ }
Severity: Minor
Found in lib/miga/cli/opt_helper.rb by rubocop

This cop checks for ambiguous block association with method when param passed without parentheses.

Example:

# bad
some_method a { |val| puts val }

Example:

# good
# With parentheses, there's no ambiguity.
some_method(a) { |val| puts val }

# good
# Operator methods require no disambiguation
foo == bar { |b| b.baz }

# good
# Lambda arguments require no disambiguation
foo = ->(bar) { bar.baz }

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