bio-miga/miga

scripts/clade_finding.bash

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#!/bin/bash
# Available variables: $PROJECT, $RUNTYPE, $MIGA, $CORES
set -e
SCRIPT="clade_finding"
# shellcheck source=scripts/miga.bash
. "$MIGA/scripts/miga.bash" || exit 1
DIR="$PROJECT/data/10.clades/01.find"

# Initialize
miga_start_project_step "$DIR"

# Run
ruby -I "$MIGA/lib" "$MIGA/utils/subclades.rb" "$PROJECT" "$SCRIPT"

# Finalize
miga_end_project_step "$DIR"