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test/project_test.rb

Summary

Maintainability
A
1 hr
Test Coverage
A
100%

Class has too many lines. [150/100]
Open

class ProjectTest < Test::Unit::TestCase
  include TestHelper

  def setup
    initialize_miga_home
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks if the length a class exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for test_import_dataset is too high. [37.12/15]
Open

  def test_import_dataset
    p1 = project
    d = p1.add_dataset('d1')
    File.open(
      File.join(p1.path, 'data', '01.raw_reads', "#{d.name}.1.fastq"), 'w'
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [27/10]
Confirmed

  def test_preprocessing
    p1 = project
    assert_predicate(p1, :done_preprocessing?)
    d1 = p1.add_dataset('BAH')
    assert_not_predicate(p1, :done_preprocessing?)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for test_preprocessing is too high. [26.31/15]
Open

  def test_preprocessing
    p1 = project
    assert_predicate(p1, :done_preprocessing?)
    d1 = p1.add_dataset('BAH')
    assert_not_predicate(p1, :done_preprocessing?)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [20/10]
Confirmed

  def test_import_dataset
    p1 = project
    d = p1.add_dataset('d1')
    File.open(
      File.join(p1.path, 'data', '01.raw_reads', "#{d.name}.1.fastq"), 'w'
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [11/10]
Confirmed

  def test_add_result
    p1 = project
    assert_nil(p1.add_result(:doom))
    %w[.rds .log .txt .done].each do |x|
      assert_nil(p1.add_result(:haai_distances))
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for test_datasets is too high. [16.28/15]
Open

  def test_datasets
    p = project
    d = dataset(0, 'd1')
    assert_equal(MiGA::Dataset, d.class)
    assert_equal([d], p.datasets)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method test_preprocessing has 27 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def test_preprocessing
    p1 = project
    assert_predicate(p1, :done_preprocessing?)
    d1 = p1.add_dataset('BAH')
    assert_not_predicate(p1, :done_preprocessing?)
Severity: Minor
Found in test/project_test.rb - About 1 hr to fix

Add parentheses to nested method call MiGA::Project.DISTANCE_TASKS.is_a? Array.
Open

    assert(MiGA::Project.DISTANCE_TASKS.is_a? Array)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks for unparenthesized method calls in the argument list of a parenthesized method call.

Example:

# good
method1(method2(arg), method3(arg))

# bad
method1(method2 arg, method3, arg)

Missing magic comment # frozen_string_literal: true.
Open

require 'test_helper'
Severity: Minor
Found in test/project_test.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Add parentheses to nested method call MiGA::Project.KNOWN_TYPES.is_a? Hash.
Open

    assert(MiGA::Project.KNOWN_TYPES.is_a? Hash)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks for unparenthesized method calls in the argument list of a parenthesized method call.

Example:

# good
method1(method2(arg), method3(arg))

# bad
method1(method2 arg, method3, arg)

Add parentheses to nested method call MiGA::Project.INCLADE_TASKS.is_a? Array.
Open

    assert(MiGA::Project.INCLADE_TASKS.is_a? Array)
Severity: Minor
Found in test/project_test.rb by rubocop

This cop checks for unparenthesized method calls in the argument list of a parenthesized method call.

Example:

# good
method1(method2(arg), method3(arg))

# bad
method1(method2 arg, method3, arg)

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