cBioPortal/iViz

File tableView.js has 579 lines of code (exceeds 250 allowed). Consider refactoring.

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/**
 * Created by Karthik Kalletla on 6/20/16.
 */
'use strict';
(function(iViz, dc, _, React, ReactDOM, EnhancedFixedDataTableSpecial) {

Identical blocks of code found in 2 locations. Consider refactoring.

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        if (self_.grid_ === '') {
          self_.grid_ = new Packery(document.querySelector('.grid'), {
            itemSelector: '.grid-item',
            columnWidth: window.iViz.styles.vars.width.one + 5,
            rowHeight: window.iViz.styles.vars.height.one + 5,

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Identical blocks of code found in 2 locations. Consider refactoring.

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        if (this.grid_ === '') {
          self_.grid_ = new Packery(document.querySelector('.grid'), {
            itemSelector: '.grid-item',
            columnWidth: window.iViz.styles.vars.width.one + 5,
            rowHeight: window.iViz.styles.vars.height.one + 5,

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Function createQtip has 224 lines of code (exceeds 25 allowed). Consider refactoring.

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      createQtip: function() {
        var self_ = this;
        var previousSelection = {};
        $('.virtual-study').qtip(iViz.util.defaultQtipConfig(
          (self_.showSaveButton ? 'Save/' : '') + 'Share Virtual Study'));

Similar blocks of code found in 2 locations. Consider refactoring.

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              if (_hasDFS) {
                var _dfsSurvivalAttrMeta = {};
                _dfsSurvivalAttrMeta.attr_id = 'DFS_SURVIVAL';
                _dfsSurvivalAttrMeta.datatype = 'SURVIVAL';
                _dfsSurvivalAttrMeta.view_type = 'survival';

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Similar blocks of code found in 2 locations. Consider refactoring.

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              if (_hasOS) {
                var _osSurvivalAttrMeta = {};
                _osSurvivalAttrMeta.attr_id = 'OS_SURVIVAL';
                _osSurvivalAttrMeta.datatype = 'SURVIVAL';
                _osSurvivalAttrMeta.view_type = 'survival';

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Function barChart has 211 lines of code (exceeds 25 allowed). Consider refactoring.

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  iViz.util.barChart = (function() {
    var content = {};

    /**
     * Customize the bar chart configuration options according to

Function getDcConfig has 207 lines of code (exceeds 25 allowed). Consider refactoring.

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    content.getDcConfig = function(data, logScale) {
      var config = {
        xDomain: [],
        xFakeDomain: [], // Design for noGrouping Data
        divider: 1,

Function ScatterPlot has 199 lines of code (exceeds 25 allowed). Consider refactoring.

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  iViz.view.component.ScatterPlot = function() {
    var content = this;
    var chartId_;
    var data_;
    var groups_ = [];

Function rangeFilter has 190 lines of code (exceeds 25 allowed). Consider refactoring.

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    content.rangeFilter = function(logScaleChecked, _filter) {
      var tempFilters_ = [];
      var minNumBarPoint = '';
      var maxNumBarPoint = '';
      var selectedNumBar = [];

File pieChart.js has 461 lines of code (exceeds 250 allowed). Consider refactoring.

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/**
 * @author Hongxin Zhang on 3/10/16.
 */

'use strict';

Similar blocks of code found in 2 locations. Consider refactoring.

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                } else {
                  if (_patientAttributes[attr.attr_id]) {
                    _patientAttributes.study_ids.push.apply(_patientAttributes.study_ids, attr.study_ids);
                    if (attr.priority !== 1) {
                      if (_patientAttributes[attr.attr_id].priority > 1) {

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Similar blocks of code found in 2 locations. Consider refactoring.

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                if (attr.is_patient_attribute === '0') {
                  if (_sampleAttributes[attr.attr_id]) {
                    _sampleAttributes.study_ids.push.apply(_sampleAttributes.study_ids, attr.study_ids);
                    if (attr.priority !== 1) {
                      if (_sampleAttributes[attr.attr_id].priority > 1) {

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Similar blocks of code found in 2 locations. Consider refactoring.

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      'addingChart': function(groupId, val) {
        if (this.attributes.group_id === groupId) {
          if (this.attributes.filter.length > 0) {
            if (val) {
              this.invisibleDimension.filterAll();

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Similar blocks of code found in 2 locations. Consider refactoring.

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      'addingChart': function(groupId, val) {
        if (this.attributes.group_id === groupId) {
          if (this.attributes.filter.length > 0) {
            if (val) {
              this.invisibleDimension.filterAll();

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Function addCurve has 162 lines of code (exceeds 25 allowed). Consider refactoring.

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  iViz.view.component.SurvivalCurve.prototype.addCurve = function(data,
    _curveIndex,
    _lineColor) {
    var _self = this;
    

Function tableView has 155 lines of code (exceeds 25 allowed). Consider refactoring.

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  iViz.util.tableView = (function() {
    var content = {};
    content.compare = function(arr1, arr2) {
      if (arr1.length !== arr2.length) {
        return false;

Identical blocks of code found in 2 locations. Consider refactoring.

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  content.util.intersection = function(a, b) {
    var result = [];
    var i = 0;
    var j = 0;
    var aL = a.length;

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Identical blocks of code found in 2 locations. Consider refactoring.

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    content.intersection = function(a, b) {
      var result = [];
      var i = 0;
      var j = 0;
      var aL = a.length;

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File vueCore.js has 411 lines of code (exceeds 250 allowed). Consider refactoring.

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'use strict';
(function(Vue, iViz, dc, _) {
  iViz.vue = {};

  iViz.vue.manage = (function() {