Function rebuild has 54 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  rebuild() {
    const self = this

    // Destroy current geometry
    gfxutils.clearTree(this)

Function RepresentationMap has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var RepresentationMap = function () {
  function RepresentationMap() {
    _classCallCheck(this, RepresentationMap);
    this.representationMap = {};
    this.representationID = {};

Function RepresentationMap has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var RepresentationMap = function () {
  function RepresentationMap() {
    _classCallCheck(this, RepresentationMap);
    this.representationMap = {};
    this.representationID = {};

Function _build has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _build() {
    const bondsIdc = this._selection.chunks
    const { bonds, parent } = this._selection
    const mode = this._mode
    const colorer = this._colorer

Function _tryBond has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _tryBond(prevBond, currRight, currDir) {
    const bondsOrder = []
    const bondsData = this._bondsData
    const currLeft = _anotherAtom(prevBond, currRight)
    const currVec = currRight.position.clone().sub(currLeft.position)

Function o has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    function o() {
      var o,
        s,
        f = r[a]
      if (0 === (128 & f)) return a++, f

Function _buildSelectorFromSortedLists has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _buildSelectorFromSortedLists(atoms, residues, chains) {
    const complex = this._complex

    function optimizeList(list) {
      const result = []

Function _parseATOM has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _parseATOM(stream) {
    if (this._modelId !== 1) {
      return
    }

Function constructor has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  constructor(
    radiusTop,
    radiusBottom,
    height,
    radialSegments,

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Function SphereCollisionGeo has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

const SphereCollisionGeo = (base) =>
  class extends base {
    constructor(count, ...args) {
      super(...args)
      this._objects = new Array(count)

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Function _build has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  _build() {
    const self = this

    for (let i = 0; i < this._complex._residues.length - 1; ++i) {
      const ri = this._complex._residues[i]

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Function _forEachSubChain has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  _forEachSubChain(mask, process) {
    const residues = this._complex._residues
    const subs = this._subDivs
    for (let i = 0, n = subs.length; i < n; ++i) {
      for (let idx = subs[i].start, last = subs[i].end; idx <= last; ++idx) {

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Function getState has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  getState(opts) {
    const state = {}

    opts = defaults(opts, {
      compact: true,

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Function updateToFrame has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  updateToFrame(frameData) {
    const bondsIdc = this._selection.chunks
    const { bonds } = this._selection
    const mode = this._mode
    const colorer = this._colorer

Function _findPairs has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _findPairs() {
    const vw = this._complex.getVoxelWorld()
    if (vw === null) {
      return
    }

Function rep has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  rep(index, rep) {
    // if index is missing then it is the current
    if (!rep && (index === undefined || index instanceof Object)) {
      rep = index
      index = this.repCurrent()

Function toURL has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function toURL(opts) {
  const stringList = []
  let idx = 0

  function checkAndAdd(prefix, value) {

Function _build has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _build() {
    const bondsIdc = this._selection.chunks
    const { bonds, parent } = this._selection
    const mode = this._mode
    const colorer = this._colorer

Function constructor has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  constructor() {
    const geo = new BufferGeometry()
    super(geo)
    this.clipPlane = new Plane()
    const size = new Vector3(0.5, 0.5, 0.5)

Function calculateGridCorners has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  calculateGridCorners(corners, side, vBoxMin, vBoxMax, atoms, probeRad) {
    const side2 = side * side
    const side3 = side2 * side
    const vCorner = new Vector3()
    const vDif = new Vector3()