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Similar blocks of code found in 2 locations. Consider refactoring.
Open

Picker.prototype.dispose = function () {
  for (let i = 0; i < this._listeners.length; i++) {
    const l = this._listeners[i]
    l.obj.removeEventListener(l.type, l.handler)
  }
Severity: Major
Found in packages/miew/src/ui/Picker.js and 1 other location - About 2 hrs to fix
packages/miew/src/ui/ObjectControls.js on lines 898..903

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 90.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

var classCallCheck = createCommonjsModule(function (module) {
function _classCallCheck(instance, Constructor) {
  if (!(instance instanceof Constructor)) {
    throw new TypeError("Cannot call a class as a function");
  }
Severity: Major
Found in packages/miew-cli/dist/index.modern.js and 1 other location - About 2 hrs to fix
packages/miew-cli/dist/index.js on lines 42..49

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 90.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Function test_match has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      test_match: function (match, indexed_rule) {
        var token, lines, backup

        if (this.options.backtrack_lexer) {
          // save context
Severity: Major
Found in packages/miew-cli/src/MiewCLIParser.js - About 2 hrs to fix

    Function e has 68 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

      function e(r, i, o) {
    var a = typeof r
    if ('string' === a) {
      var u = n(r)
      if (32 > u) return i.setUint8(o, 160 | u), t(i, o + 1, r), 1 + u
    Severity: Major
    Found in packages/miew/src/vendors/mmtf.js - About 2 hrs to fix

      Function test_match has 68 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

            test_match: function (match, indexed_rule) {
        var token, lines, backup

        if (this.options.backtrack_lexer) {
          // save context
      Severity: Major
      Found in packages/miew/src/utils/SelectionParser.js - About 2 hrs to fix

        Similar blocks of code found in 3 locations. Consider refactoring.
        Open

          reprList
    .find(
      `.panel:eq(${index}) [data-toggle=combobox-panel][data-value=miew-menu-panel-color]`
    )
    .on('click', function () {
        Severity: Major
        Found in demo/src/scripts/ui/Menu.js and 2 other locations - About 2 hrs to fix
        demo/src/scripts/ui/Menu.js on lines 498..506
        demo/src/scripts/ui/Menu.js on lines 508..518

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

          }, {
    key: "listSelector",
    value: function listSelector(miew, context) {
      var ret = '';
      for (var k in context) {
        Severity: Major
        Found in packages/miew-cli/dist/index.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/dist/index.modern.js on lines 3813..3824

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

        EventDispatcher.prototype.dispatchEvent = function (event) {
  const self = this

  forEach(this._handlers[event.type], (callback) => {
    const context = callback[1] || self
        Severity: Major
        Found in packages/miew/src/utils/EventDispatcher.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/src/EventDispatcher.js on lines 84..91

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

        function bytesToBase64(/** ArrayBuffer */ buffer) {
  const bytes = new Uint8Array(buffer)
  let binary = ''
  for (let i = 0; i < bytes.byteLength; i++) {
    binary += String.fromCharCode(bytes[i])
        Severity: Major
        Found in packages/miew/src/utils.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/src/utils.js on lines 285..292

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 3 locations. Consider refactoring.
        Open

          reprList
    .find(
      `.panel:eq(${index}) [data-toggle=combobox-panel][data-value=miew-menu-panel-matpreset]`
    )
    .on('click', function () {
        Severity: Major
        Found in demo/src/scripts/ui/Menu.js and 2 other locations - About 2 hrs to fix
        demo/src/scripts/ui/Menu.js on lines 487..497
        demo/src/scripts/ui/Menu.js on lines 508..518

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 2 locations. Consider refactoring.
        Open

        function createCommonjsModule(fn, basedir, module) {
    return module = {
        path: basedir,
        exports: {},
        require: function (path, base) {
        Severity: Major
        Found in packages/miew-cli/dist/index.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/dist/index.modern.js on lines 11..19

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

        function bytesToBase64(/** ArrayBuffer */ buffer) {
  const bytes = new Uint8Array(buffer)
  let binary = ''
  for (let i = 0; i < bytes.byteLength; i++) {
    binary += String.fromCharCode(bytes[i])
        Severity: Major
        Found in packages/miew-cli/src/utils.js and 1 other location - About 2 hrs to fix
        packages/miew/src/utils.js on lines 285..292

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

        EventDispatcher.prototype.dispatchEvent = function (event) {
  const self = this

  forEach(this._handlers[event.type], (callback) => {
    const context = callback[1] || self
        Severity: Major
        Found in packages/miew-cli/src/EventDispatcher.js and 1 other location - About 2 hrs to fix
        packages/miew/src/utils/EventDispatcher.js on lines 84..91

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

          }, {
    key: "listSelector",
    value: function listSelector(miew, context) {
      var ret = '';
      for (var k in context) {
        Severity: Major
        Found in packages/miew-cli/dist/index.modern.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/dist/index.js on lines 3817..3828

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 3 locations. Consider refactoring.
        Open

          reprList
    .find(
      `.panel:eq(${index}) [data-toggle=combobox-panel][data-value=miew-menu-panel-select-color]`
    )
    .on('click', function () {
        Severity: Major
        Found in demo/src/scripts/ui/Menu.js and 2 other locations - About 2 hrs to fix
        demo/src/scripts/ui/Menu.js on lines 487..497
        demo/src/scripts/ui/Menu.js on lines 498..506

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 2 locations. Consider refactoring.
        Open

        function createCommonjsModule(fn, basedir, module) {
    return module = {
        path: basedir,
        exports: {},
        require: function (path, base) {
        Severity: Major
        Found in packages/miew-cli/dist/index.modern.js and 1 other location - About 2 hrs to fix
        packages/miew-cli/dist/index.js on lines 15..23

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 89.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Function dssp has 67 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

          dssp() {
    const ssMap = new SecondaryStructureMap(this)

    const structures = (this.structures = [])
    const helices = (this._helices = [])
        Severity: Major
        Found in packages/miew/src/chem/Complex.js - About 2 hrs to fix

          Function Picker has 67 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

          function Picker(gfxObj, camera, domElement) {
  EventDispatcher.call(this)
  const self = this

  this.gfxObj = gfxObj
          Severity: Major
          Found in packages/miew/src/ui/Picker.js - About 2 hrs to fix

            Function _forEachVoxelWithinRadius has 67 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

              _forEachVoxelWithinRadius(center, radius, process) {
    const xRange = VoxelWorld._xRange
    const yRange = VoxelWorld._yRange
    const zRange = VoxelWorld._zRange
            Severity: Major
            Found in packages/miew/src/chem/VoxelWorld.js - About 2 hrs to fix

              Similar blocks of code found in 2 locations. Consider refactoring.
              Open

                reprList
    .find(`.panel:eq(${index}) .panel-heading .btn-visible`)
    .on('click', () => {
      reprList.find(`.panel:eq(${index}) .panel-heading .btn-visible`).hide()
      reprList.find(`.panel:eq(${index}) .panel-heading .btn-invisible`).show()
              Severity: Major
              Found in demo/src/scripts/ui/Menu.js and 1 other location - About 2 hrs to fix
              demo/src/scripts/ui/Menu.js on lines 421..426

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 88.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Severity
              Category
              Status
              Source
              Language