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Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if readimptypes:
                if line.strip() == "" or '[' in line: # end of impropertypes section
                    readimptypes = False
                else:
                    tmp = line.split()
Severity: Major
Found in src/tools/gromacs.py and 1 other location - About 3 days to fix
src/tools/gromacs.py on lines 411..438

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 391.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if readdhtypes:
                if line.strip() == "" or '[' in line: # end of dihedraltypes section
                    readdhtypes = False
                else:
                    tmp = line.split()
Severity: Major
Found in src/tools/gromacs.py and 1 other location - About 3 days to fix
src/tools/gromacs.py on lines 385..409

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 391.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

for pidCG in range(num_particles_CG):

    # we put CG molecule in first atom, later CG molecules will be positioned in the center
    # note that we put the CG molecule at the first atom's position. Later the CG molecule will be positioned in the center of mass of all it's atoms
    tmptuple = [pidCG+num_particles_AT+1]
Severity: Major
Found in examples/adress/multiple_time_stepping_fadress/water_mts_fadress.py and 1 other location - About 3 days to fix
examples/adress/hadress_water/water.py on lines 120..151

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 333.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

for pidCG in range(int(num_particlesCG)):
    # we put CG molecule in first atom, later CG molecules will be positioned in the center
    #cmp = espressopp.tools.AdressSetCG(3, pidCG, allParticlesAT)

    # Preparation of tuples (tuples define, which atoms belong to which CG molecules)
Severity: Major
Found in examples/adress/hadress_water/water.py and 1 other location - About 3 days to fix
examples/adress/multiple_time_stepping_fadress/water_mts_fadress.py on lines 117..147

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 333.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if add_particles_array:

        tstart = time.time()
        props = ['id', 'type', 'mass', 'posx', 'posy', 'posz', 'vx', 'vy', 'vz']
        ids      = np.arange(1,num_particles+1)
Severity: Major
Found in examples/add_particles_numpy/add_particles_numpy.py and 1 other location - About 2 days to fix
testsuite/storage/testAddParticlesArray.py on lines 60..85

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 302.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if add_particles_array:

        tstart = time.time()
        props = ['id', 'type', 'mass', 'posx', 'posy', 'posz', 'vx', 'vy', 'vz']
        ids      = np.arange(1,num_particles+1)
Severity: Major
Found in testsuite/storage/testAddParticlesArray.py and 1 other location - About 2 days to fix
examples/add_particles_numpy/add_particles_numpy.py on lines 39..64

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 302.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File gromacs.py has 1100 lines of code (exceeds 250 allowed). Consider refactoring.
Open

#  Copyright (C) 2012,2013,2015(H),2016
#      Max Planck Institute for Polymer Research
#  Copyright (C) 2008,2009,2010,2011
#      Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
Severity: Major
Found in src/tools/gromacs.py - About 2 days to fix

    Function reDistCells has a Cognitive Complexity of 136 (exceeds 5 allowed). Consider refactoring.
    Open

    def reDistCells(halfNeilListX, cellsX, eh_size, rc_skin, node_gridX, ratioMS, sizeX, idealGas, halfCellInt = 1):
    #global preFactCen
    preFactCen = 1.0
    print("HeSpaDDA message: Cells redistribution will improve whenever the Cells1D are at least twice as big as Nodes1D!")
    wholeNeiListX = []
    Severity: Minor
    Found in src/tools/loadbal.py - About 2 days to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        for i in range(1,P):
        for p in allParticles:
            pid=p[propDict['id']]
            newparticle=copy.deepcopy(p)
            # set types accoring to imag time index
    Severity: Major
    Found in src/tools/pathintegral.py and 1 other location - About 2 days to fix
    testsuite/pi_water/pathintegral.py on lines 69..82

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 285.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        for i in range(1,P):
        for p in allParticles:
            pid=p[propDict['id']]
            newparticle=copy.deepcopy(p)
            # set new types
    Severity: Major
    Found in testsuite/pi_water/pathintegral.py and 1 other location - About 2 days to fix
    src/tools/pathintegral.py on lines 110..123

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 285.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        for i in range(nInteractions):
        bT = system.getInteraction(i).bondType()
        if   bT == espressopp.interaction.Pair:
            nbondtypes += 1
            bl  = system.getInteraction(i).getFixedPairList().getBonds()
    Severity: Major
    Found in src/tools/io_extended.py and 1 other location - About 2 days to fix
    src/tools/lammps.py on lines 405..427

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 276.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        for i in range(nInteractions):
        bT = system.getInteraction(i).bondType()
        if   bT == espressopp.interaction.Pair:
            nbondtypes += 1
            bl  = system.getInteraction(i).getFixedPairList().getBonds()
    Severity: Major
    Found in src/tools/lammps.py and 1 other location - About 2 days to fix
    src/tools/io_extended.py on lines 74..96

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 276.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Function addParticles has a Cognitive Complexity of 124 (exceeds 5 allowed). Consider refactoring.
    Open

        def addParticles(self, particleList, *properties):
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():

            index_id          = -1
            index_pos         = -1
    Severity: Minor
    Found in src/storage/Storage.py - About 2 days to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    File pmi.py has 989 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    #  Copyright (C) 2012,2013
#      Max Planck Institute for Polymer Research
#  Copyright (C) 2008,2009,2010,2011
#      Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
    Severity: Major
    Found in src/pmi.py - About 2 days to fix

      Identical blocks of code found in 3 locations. Consider refactoring.
      Open

      for pidCG in range(num_particlesCG):
    # we put CG molecule in first atom, later CG molecules will be positioned in the center
    cmp = espressopp.tools.AdressSetCG(4, pidCG, allParticlesAT)
    # Preparation of tuples (tuples define, which atoms belong to which CG molecules)
    tmptuple = [pidCG+num_particles]
      Severity: Major
      Found in examples/adress/hadress_tetraliquid/hadress_tetraliquid_KTI/hadressKTI.py and 2 other locations - About 2 days to fix
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_FEC/hadressPressureFEC.py on lines 100..126
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_plain/hadress.py on lines 96..122

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 258.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 3 locations. Consider refactoring.
      Open

      for pidCG in range(num_particlesCG):
    # we put CG molecule in first atom, later CG molecules will be positioned in the center
    cmp = espressopp.tools.AdressSetCG(4, pidCG, allParticlesAT)
    # Preparation of tuples (tuples define, which atoms belong to which CG molecules)
    tmptuple = [pidCG+num_particles]
      Severity: Major
      Found in examples/adress/hadress_tetraliquid/hadress_tetraliquid_FEC/hadressPressureFEC.py and 2 other locations - About 2 days to fix
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_KTI/hadressKTI.py on lines 96..122
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_plain/hadress.py on lines 96..122

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 258.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 3 locations. Consider refactoring.
      Open

      for pidCG in range(num_particlesCG):
    # we put CG molecule in first atom, later CG molecules will be positioned in the center
    cmp = espressopp.tools.AdressSetCG(4, pidCG, allParticlesAT)
    # Preparation of tuples (tuples define, which atoms belong to which CG molecules)
    tmptuple = [pidCG+num_particles]
      Severity: Major
      Found in examples/adress/hadress_tetraliquid/hadress_tetraliquid_plain/hadress.py and 2 other locations - About 2 days to fix
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_FEC/hadressPressureFEC.py on lines 100..126
      examples/adress/hadress_tetraliquid/hadress_tetraliquid_KTI/hadressKTI.py on lines 96..122

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 258.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

              particle_list = [
            (1, 1, 0, espressopp.Real3D(5.0, 5.0, 5.0), espressopp.Real3D(0.0, 1.0, 0.0), 1.0, 0),
            (2, 1, 0, espressopp.Real3D(5.0, 6.5, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
            (3, 1, 0, espressopp.Real3D(5.0, 7.5, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
            (4, 1, 0, espressopp.Real3D(5.0, 8.5, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
      Severity: Major
      Found in testsuite/AdResS/TDforce/test_TDforce.py and 2 other locations - About 2 days to fix
      testsuite/AdResS/TDforce/test_TDforce.py on lines 204..214
      testsuite/AdResS/TDforce/test_TDforce.py on lines 257..267

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 256.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

              particle_list = [
            (1, 1, 0, espressopp.Real3D(4.0, 5.0, 5.0), espressopp.Real3D(-1.0, 1.0, 0.0), 1.0, 0),
            (2, 1, 0, espressopp.Real3D(6.0, 5.0, 5.0), espressopp.Real3D(1.0, 1.0, 0.0), 1.0, 0),
            (3, 1, 0, espressopp.Real3D(5.0, 6.2, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
            (4, 1, 0, espressopp.Real3D(3.0, 8.5, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
      Severity: Major
      Found in testsuite/AdResS/TDforce/test_TDforce.py and 2 other locations - About 2 days to fix
      testsuite/AdResS/TDforce/test_TDforce.py on lines 151..161
      testsuite/AdResS/TDforce/test_TDforce.py on lines 204..214

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 256.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

              particle_list = [
            (1, 1, 0, espressopp.Real3D(4.0, 5.0, 5.0), espressopp.Real3D(-1.0, 1.0, 0.0), 1.0, 0),
            (2, 1, 0, espressopp.Real3D(6.0, 5.0, 5.0), espressopp.Real3D(1.0, 1.0, 0.0), 1.0, 0),
            (3, 1, 0, espressopp.Real3D(5.0, 6.2, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
            (4, 1, 0, espressopp.Real3D(3.0, 8.5, 5.0), espressopp.Real3D(0.0, 0.0, 0.0), 1.0, 0),
      Severity: Major
      Found in testsuite/AdResS/TDforce/test_TDforce.py and 2 other locations - About 2 days to fix
      testsuite/AdResS/TDforce/test_TDforce.py on lines 151..161
      testsuite/AdResS/TDforce/test_TDforce.py on lines 257..267

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 256.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

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