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Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, epsilon=1.0, sigma=1.0, r1=0.0,
                 cutoff=infinity, shift="auto"):
        """Initialize the local LennardJonesGromacs object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift =="auto":
Severity: Minor
Found in src/interaction/LennardJonesGromacs.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function cellGrid has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def cellGrid(box_size, node_grid, rc, skin, halfCellInt = 1):
    rc_skin = rc + skin
    if rc_skin == 0:
        raise Error("interaction range (cutoff + skin) must be larger than 0")
    if (node_grid[0] <= 0 or node_grid[1] <= 0 or node_grid[2] <= 0):
Severity: Minor
Found in src/tools/decomp.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function setImproperInteractionsAdress has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def setImproperInteractionsAdress(system, impropers, impropertypeparams, ftpl):
    improper_interactions = {}

    for idlist, improperlist in impropers.items():
        fpl = espressopp.FixedQuadrupleListAdress(system.storage, ftpl)
Severity: Minor
Found in src/tools/gromacs.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, epsilon=1.0, sigma=1.0,
                 cutoff=infinity, caprad=0.0 ,shift="auto"):
        """Initialize the local Lennard Jones object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift =="auto":
Severity: Minor
Found in src/interaction/LennardJonesEnergyCapped.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, K=30.0, r0=0.0, rMax=1.5,
                 cutoff=infinity, r_cap=1.0, shift=0.0):
        """Initialize the local FENE object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift == "auto":
Severity: Minor
Found in src/interaction/FENECapped.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, K=1.0, r0=0.0,
                 cutoff=infinity, shift=0.0):
        """Initialize the local Quartic object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift == "auto":
Severity: Minor
Found in src/interaction/Quartic.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function fastreadxyz has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def fastreadxyz(filename):
    """
    """

    file = open(filename)
Severity: Minor
Found in src/tools/DumpConfigurations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function setDihedralInteractions has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def setDihedralInteractions(system, dihedrals, dihedraltypeparams):
    dihedral_interactions = {}

    for idlist, dihedrallist in dihedrals.items():
        fpl = espressopp.FixedQuadrupleList(system.storage)
Severity: Minor
Found in src/tools/gromacs.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, system, chainlength = None, start_pid=0):
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if chainlength is None:
                cxxinit(self, analysis_MeanSquareDispl, system)
            else:
Severity: Minor
Found in src/analysis/MeanSquareDispl.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function nodeGridSizeCheck has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def nodeGridSizeCheck(node_gridX, node_gridY, node_gridZ):
    flx = 0
    fly = 0
    flz = 0
    if node_gridX < 3:
Severity: Minor
Found in src/tools/loadbal.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function compute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def compute(self):
        res_type = self.cxxclass.getResultType(self)
        if res_type == result_types.none:
            return
        elif res_type == result_types.real_scalar:
Severity: Minor
Found in src/analysis/Observable.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function toTensorFromVector has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def toTensorFromVector(*args):
    """Try to convert the arguments to a Tensor.

    This function will only convert to a Tensor if x, y and z are
    specified."""
Severity: Minor
Found in src/Tensor.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function run_average has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def run_average(self, _vz):
        # variables to hold average density and mass flux
        av_den = 0.
        av_j = Real3D(0.)
Severity: Minor
Found in testsuite/lattice_boltzmann/test_extForce.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function check_averages has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def check_averages(self, _v):
        # variables to hold average density and mass flux
        av_den = 0.
        av_j = Real3D(0.)
Severity: Minor
Found in testsuite/lattice_boltzmann/test_LatticeBoltzmann.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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