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Function getNameOfInteraction has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def getNameOfInteraction(self, number):
        if pmi.workerIsActive():
            for name, iid in self._interaction2id.items():
                if iid == number:
                    return name
Severity: Minor
Found in src/System.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function clip_matrix has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def clip_matrix(left, right, bottom, top, near, far, perspective=False):
    """Return matrix to obtain normalized device coordinates from frustrum.

    The frustrum bounds are axis-aligned along x (left, right),
    y (bottom, top) and z (near, far).
Severity: Minor
Found in src/external/transformations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function scale_matrix has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def scale_matrix(factor, origin=None, direction=None):
    """Return matrix to scale by factor around origin in direction.

    Use factor -1 for point symmetry.
Severity: Minor
Found in src/external/transformations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function beginSystemDefinition has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def beginSystemDefinition(self):
        if pmi._PMIComm and pmi._PMIComm.isActive():
            if pmi._PMIComm.getMPIsubcomm() != MPI.COMM_NULL:
                self.groupRank = pmi._PMIComm.getMPIsubcomm().rank
            else:
Severity: Minor
Found in src/MultiSystem.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function quaternion_slerp has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def quaternion_slerp(quat0, quat1, fraction, spin=0, shortestpath=True):
    """Return spherical linear interpolation between two quaternions.

    >>> q0 = random_quaternion()
    >>> q1 = random_quaternion()
Severity: Minor
Found in src/external/transformations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, initial=None):
        """Initialize virtual trackball control.

        initial : quaternion or rotation matrix
Severity: Minor
Found in src/external/transformations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function particleExists has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def particleExists(self, pid):
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if self.cxxclass.lookupRealParticle(self, pid):
                return True
            else:
Severity: Minor
Found in src/storage/Storage.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function toInt3DFromVector has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def toInt3DFromVector(*args):
    """Try to convert the arguments to a Int3D.

    This function will only convert to a Int3D if x, y and z are
    specified."""
Severity: Minor
Found in src/Int3D.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, epsilon=1.0, cutoff=infinity, shift="auto"):

        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift =="auto":
                cxxinit(self, interaction_VSpherePair,
Severity: Minor
Found in src/interaction/VSpherePair.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, epsilon=1.0, sigma=1.0, a=12, b=6,
                 cutoff=infinity, shift="auto"):
        """Initialize the local generic Lennard Jones object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift =="auto":
Severity: Minor
Found in src/interaction/LennardJonesGeneric.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function getFoldedPosition has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def getFoldedPosition(self, pos, imageBox=None):
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup() or pmi.isController:
            if imageBox is None:
                return self.cxxclass.getFoldedPosition(self, toReal3DFromVector(pos))
            else:
Severity: Minor
Found in src/bc/BC.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function addTuples has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def addTuples(self, tuplelist):
        """
        Each processor takes the broadcasted tuplelist and
        adds those tuples whose virtual particle is owned by
        this processor.
Severity: Minor
Found in src/FixedTupleListAdress.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function workerIsActive has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def workerIsActive():
    if _PMIComm and _PMIComm.isActive():
        if _MPIcomm.rank in _PMIComm.getMPIcpugroup():
            return True
        else:
Severity: Minor
Found in src/pmi.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function projection_matrix has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def projection_matrix(point, normal, direction=None,
                      perspective=None, pseudo=False):
    """Return matrix to project onto plane defined by point and normal.

    Using either perspective point, projection direction, or none of both.
Severity: Minor
Found in src/external/transformations.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

        def __init__(self, system,
                     nodeGrid='auto',
                     cellGrid='auto'):
            if nodeGrid == 'auto':
                nodeGrid = Int3D(system.comm.rank, 1, 1)
Severity: Minor
Found in src/storage/DomainDecompositionNonBlocking.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self):

        if pmi._PMIComm and pmi._PMIComm.isActive():
            if pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
                cxxinit(self, _espressopp.Version)
Severity: Minor
Found in src/Version.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, epsilon=1.0, sigma=1.0,
                 cutoff=infinity, shift="auto"):
        """Initialize the local Lennard Jones object."""
        if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
            if shift =="auto":
Severity: Minor
Found in src/vec/interaction/LennardJones.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function addInteraction has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def addInteraction(self, interaction, name=None):

        if pmi.workerIsActive():
            ret_val = self.cxxclass.addInteraction(self, interaction)
            if name is not None:
Severity: Minor
Found in src/System.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function toReal3DFromVector has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def toReal3DFromVector(*args):
    """Try to convert the arguments to a Real3D.

    This function will only convert to a Real3D if x, y and z are
    specified."""
Severity: Minor
Found in src/Real3D.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, K0=0.0, K1=0.0, K2=0.0, K3=0.0, K4=0.0, K5=0.0, iupac=True):

        if (not (pmi._PMIComm and pmi._PMIComm.isActive())
                or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup()):
            if iupac:
Severity: Minor
Found in src/interaction/DihedralRB.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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