Sign upLogin

greenelab/deep-review

View on GitHub
Star
content/04.study.md

Summary

Maintainability
Test Coverage

Bare URL used
Open

Blindly tested in the latest CASP competition (i.e. CASP12 [@url:http://www.predictioncenter.org/casp12/rrc_avrg_results.cgi]), RaptorX-Contact ranked first in F₁ score on free-modeling targets as well as the whole set of targets.
Severity: Info
Found in content/04.study.md by markdownlint

MD034 - Bare URL used

Tags: links, url

Aliases: no-bare-urls

This rule is triggered whenever a URL is given that isn't surrounded by angle brackets:

For more information, see http://www.example.com/.

To fix this, add angle brackets around the URL:

For more information, see <http:></http:>.

Rationale: Without angle brackets, the URL isn't converted into a link in many markdown parsers.

Note: if you do want a bare URL without it being converted into a link, enclose it in a code block, otherwise in some markdown parsers it will be converted:

`http://www.example.com`

First header should be a top level header
Open

## Deep learning to study the fundamental biological processes underlying human disease
Severity: Info
Found in content/04.study.md by markdownlint

MD002 - First header should be a top level header

Tags: headers

Aliases: first-header-h1

Parameters: level (number; default 1)

This rule is triggered when the first header in the document isn't a h1 header:

## This isn't a H1 header

### Another header

The first header in the document should be a h1 header:

# Start with a H1 header

## Then use a H2 for subsections

Multiple spaces after hash on atx style header
Open

####  Latent space construction
Severity: Info
Found in content/04.study.md by markdownlint

MD019 - Multiple spaces after hash on atx style header

Tags: headers, atx, spaces

Aliases: no-multiple-space-atx

This rule is triggered when more than one space is used to separate the header text from the hash characters in an atx style header:

#  Header 1

##  Header 2

To fix this, separate the header text from the hash character by a single space:

# Header 1

## Header 2

Bare URL used
Open

In CAMEO (which can be interpreted as a fully-automated CASP) [@url:https://www.cameo3d.org], its predicted contacts were also able to fold proteins with a novel fold and only 65--330 sequence homologs.
Severity: Info
Found in content/04.study.md by markdownlint

MD034 - Bare URL used

Tags: links, url

Aliases: no-bare-urls

This rule is triggered whenever a URL is given that isn't surrounded by angle brackets:

For more information, see http://www.example.com/.

To fix this, add angle brackets around the URL:

For more information, see <http:></http:>.

Rationale: Without angle brackets, the URL isn't converted into a link in many markdown parsers.

Note: if you do want a bare URL without it being converted into a link, enclose it in a code block, otherwise in some markdown parsers it will be converted:

`http://www.example.com`

There are no issues that match your filters.

Category
Status