Trailing spaces Open
One of the molecules was chosen for further testing and showed promising results in a cancer cell line and mouse model [@tag:Zhavoronkov2019_drugs].
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MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Inline HTML Open
It explores an estimated 10<sup>60</sup> synthesizable organic molecules with drug-like properties without explicit enumeration [@doi:10.1002/wcms.1104].
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MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Trailing spaces Open
Current heuristics of synthesizability, such as the synthetic accessibility score, are based on a relatively limited domain of chemical data and are too restrictive, so better models of synthesizability should help in this area [@doi:10.1021/acs.jcim.0c00174].
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MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
First header should be a top level header Open
## The impact of deep learning in treating disease and developing new treatments
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MD002 - First header should be a top level header
Tags: headers
Aliases: first-header-h1
Parameters: level (number; default 1)
This rule is triggered when the first header in the document isn't a h1 header:
## This isn't a H1 header
### Another header
The first header in the document should be a h1 header:
# Start with a H1 header
## Then use a H2 for subsections
Trailing spaces Open
We note in passing that Jensen (2018) [@doi:10.1039/C8SC05372C] and Yoshikawa et al. (2019) [@doi:10.1246/cl.180665] have both demonstrated genetic algorithms that are competitive with deep learning approaches.
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MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Trailing spaces Open
Progress on overcoming both of these shortcomings is proceeding on many fronts, and we believe the future of deep learning for molecular design is quite bright.
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MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.