Showing 158 of 158 total issues
Trailing spaces Open
1.5. Harvard Medical School, Boston, MA
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Trailing spaces Open
1.7. Department of Epidemiology, Geisel School of Medicine, Dartmouth College, Lebanon, NH
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Trailing spaces Open
1.9. Data Science Institute, Imperial College London, London, United Kingdom
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Trailing spaces Open
1.16. Biophysics Program, Stanford University, Stanford, CA
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Inline HTML Open
{{author.name}}<sup>{% for number in author.affiliation_numbers %}2.{{number}}{%- if not loop.last -%},{%- endif -%}{% endfor %}⚄{%- if author.symbol_str is defined -%},{{author.symbol_str}}{%- endif -%}</sup>
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
2.{{affiliation.affiliation_number}}. {{affiliation.affiliation}}<br>
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
Daniel S. Himmelstein<sup>1.2</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
Yifan Peng<sup>1.25</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Multiple consecutive blank lines Open
- Read upRead up
- Exclude checks
MD012 - Multiple consecutive blank lines
Tags: whitespace, blank_lines
Aliases: no-multiple-blanks
This rule is triggered when there are multiple consecutive blank lines in the document:
Some text here
Some more text here
To fix this, delete the offending lines:
Some text here
Some more text here
Note: this rule will not be triggered if there are multiple consecutive blank lines inside code blocks.
Bare URL used Open
+ **PDF manuscript** at https://greenelab.github.io/deep-review/manuscript.pdf
- Read upRead up
- Exclude checks
MD034 - Bare URL used
Tags: links, url
Aliases: no-bare-urls
This rule is triggered whenever a URL is given that isn't surrounded by angle brackets:
For more information, see http://www.example.com/.
To fix this, add angle brackets around the URL:
For more information, see <http:></http:>.
Rationale: Without angle brackets, the URL isn't converted into a link in many markdown parsers.
Note: if you do want a bare URL without it being converted into a link, enclose it in a code block, otherwise in some markdown parsers it will be converted:
`http://www.example.com`
Bare URL used Open
Please attribute by linking to https://github.com/greenelab/deep-review.
- Read upRead up
- Exclude checks
MD034 - Bare URL used
Tags: links, url
Aliases: no-bare-urls
This rule is triggered whenever a URL is given that isn't surrounded by angle brackets:
For more information, see http://www.example.com/.
To fix this, add angle brackets around the URL:
For more information, see <http:></http:>.
Rationale: Without angle brackets, the URL isn't converted into a link in many markdown parsers.
Note: if you do want a bare URL without it being converted into a link, enclose it in a code block, otherwise in some markdown parsers it will be converted:
`http://www.example.com`
Trailing punctuation in header Open
### Section 2 – Scope.
- Read upRead up
- Exclude checks
MD026 - Trailing punctuation in header
Tags: headers
Aliases: no-trailing-punctuation
Parameters: punctuation (string; default ".,;:!?")
This rule is triggered on any header that has a punctuation character as the last character in the line:
# This is a header.
To fix this, remove any trailing punctuation:
# This is a header
Note: The punctuation parameter can be used to specify what characters class
as punctuation at the end of the header. For example, you can set it to
'.,;:!'
to allow headers with question marks in them, such as might be used
in an FAQ.
Trailing punctuation in header Open
### Section 5 – Disclaimer of Warranties and Limitation of Liability.
- Read upRead up
- Exclude checks
MD026 - Trailing punctuation in header
Tags: headers
Aliases: no-trailing-punctuation
Parameters: punctuation (string; default ".,;:!?")
This rule is triggered on any header that has a punctuation character as the last character in the line:
# This is a header.
To fix this, remove any trailing punctuation:
# This is a header
Note: The punctuation parameter can be used to specify what characters class
as punctuation at the end of the header. For example, you can set it to
'.,;:!'
to allow headers with question marks in them, such as might be used
in an FAQ.
Ordered list item prefix Open
3. PubMed ID, cite like `@pubmed:26158728`.
- Read upRead up
- Exclude checks
MD029 - Ordered list item prefix
Tags: ol
Aliases: ol-prefix
Parameters: style ("one", "ordered"; default "one")
This rule is triggered on ordered lists that do not either start with '1.' or do not have a prefix that increases in numerical order (depending on the configured style, which defaults to 'one').
Example valid list if the style is configured as 'one':
1. Do this.
1. Do that.
1. Done.
Example valid list if the style is configured as 'ordered':
1. Do this.
2. Do that.
3. Done.
Trailing spaces Open
1.2. Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Trailing spaces Open
1.4. Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI
- Read upRead up
- Exclude checks
MD009 - Trailing spaces
Tags: whitespace
Aliases: no-trailing-spaces
Parameters: br_spaces (number; default: 0)
This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.
The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.
Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.
Inline HTML Open
Michael Zietz<sup>1.2</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
Wei Xie<sup>1.13</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
Benjamin J. Lengerich<sup>1.15</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.
Inline HTML Open
Anthony Gitter<sup>1.34,1.35,†</sup>,
- Read upRead up
- Exclude checks
MD033 - Inline HTML
Tags: html
Aliases: no-inline-html
This rule is triggered whenever raw HTML is used in a markdown document:
Inline HTML header
To fix this, use 'pure' markdown instead of including raw HTML:
# Markdown header
Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.