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seanlaidlaw/iRODS-Downloader

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Showing 87 of 87 total issues

don't use underscores in Go names; var run_lane should be runLane
Open

            run_lane := strings.Split(split_filename[1], "#")[0] // this gets between _ and # which is lane
Severity: Minor
Found in irods_downloader.go by golint

don't use underscores in Go names; struct field Irods_path should be IrodsPath
Open

    Irods_path                   string
Severity: Minor
Found in irods_downloader.go by golint

var rankingsJson should be rankingsJSON
Open

    rankingsJson, _ := json.MarshalIndent(cram_list, "", "  ")
Severity: Minor
Found in irods_downloader.go by golint

don't use underscores in Go names; struct field Library_type should be LibraryType
Open

    Library_type                 string
Severity: Minor
Found in irods_downloader.go by golint

don't use underscores in Go names; struct field Fastq_1_path should be Fastq1Path
Open

    Fastq_1_path                 string
Severity: Minor
Found in irods_downloader.go by golint

don't use underscores in Go names; struct field Symlinked_fq_2 should be SymlinkedFq2
Open

    Symlinked_fq_2               string
Severity: Minor
Found in irods_downloader.go by golint

don't use underscores in Go names; var bam_output should be bamOutput
Open

                bam_output := out_folder + cram.Sample_name + ".bam"
Severity: Minor
Found in irods_downloader.go by golint
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