tomopy/tomopy

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Function project2 has 10 arguments (exceeds 4 allowed). Consider refactoring.
Open

def project2(
Severity: Major
Found in source/tomopy/sim/project.py - About 1 hr to fix

    Function run_pyctest has 31 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

    def run_pyctest():
        '''
        Configure PyCTest and execute
        '''
        # run argparse, checkout source, copy over files
    Severity: Minor
    Found in pyctest_tomopy.py - About 1 hr to fix

      Function ufo_fbp has 29 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

      def ufo_fbp(tomo, center, recon, theta, **kwargs):
          """
          Reconstruct object using UFO's FBP pipeline
          """
          import gi
      Severity: Minor
      Found in source/tomopy/recon/wrappers.py - About 1 hr to fix

        Function recon has 9 arguments (exceeds 4 allowed). Consider refactoring.
        Open

        def recon(tomo,
        Severity: Major
        Found in source/tomopy/recon/algorithm.py - About 1 hr to fix

          Function find_center_vo has 9 arguments (exceeds 4 allowed). Consider refactoring.
          Open

          def find_center_vo(tomo, ind=None, smin=-50, smax=50, srad=6, step=0.25,
          Severity: Major
          Found in source/tomopy/recon/rotation.py - About 1 hr to fix

            Function astra_rec has 9 arguments (exceeds 4 allowed). Consider refactoring.
            Open

            def astra_rec(tomo, center, recon, theta, vol_geom, niter, proj_type, gpu_index, opts):
            Severity: Major
            Found in source/tomopy/recon/wrappers.py - About 1 hr to fix

              Function vector2 has 9 arguments (exceeds 4 allowed). Consider refactoring.
              Open

              def vector2(tomo1, tomo2, theta1, theta2, center1=None, center2=None, num_iter=1, axis1=1, axis2=2):
              Severity: Major
              Found in source/tomopy/recon/vector.py - About 1 hr to fix

                Function lpmultigpu has 9 arguments (exceeds 4 allowed). Consider refactoring.
                Open

                def lpmultigpu(lp, lpmethod, recon, tomo, num_iter, reg_par, gpu_list, lock, ids):
                Severity: Major
                Found in source/tomopy/recon/wrappers.py - About 1 hr to fix

                  Function reconstruct has 28 lines of code (exceeds 25 allowed). Consider refactoring.
                  Open

                  def reconstruct(h5fname, sino, rot_center, args, blocked_views=None):
                  
                      # not setting this will cause issues on supercomputers
                      # allow user to override though
                      os.environ.setdefault("OMP_NUM_THREADS", "1")
                  Severity: Minor
                  Found in benchmarking/rec.py - About 1 hr to fix

                    Function align_seq has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
                    Open

                    def align_seq(
                            prj, ang, fdir='.', iters=10, pad=(0, 0),
                            blur=True, center=None, algorithm='sirt',
                            upsample_factor=10, rin=0.5, rout=0.8,
                            save=False, debug=True):
                    Severity: Minor
                    Found in source/tomopy/prep/alignment.py - About 1 hr to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function output_images has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
                    Open

                    def output_images(rec, fpath, format="jpeg", scale=1, ncol=1):
                        """Save an image stack as a series of concatenated images.
                    
                        Each set of ncol images are concatenated horizontally and saved together
                        into files named {fpath}_0_{ncol}.{img_format},
                    Severity: Minor
                    Found in source/tomopy/misc/benchmark.py - About 1 hr to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function build_name_append has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
                    Open

                    def build_name_append(item, separate=True, prefix="[", suffix="]", check=True, reset=False):
                        if reset:
                            pyctest.BUILD_NAME = ""
                        # if not list, check if is None
                        if item is None or not item:
                    Severity: Minor
                    Found in benchmarking/__init__.py - About 1 hr to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function retrieve_phase has 8 arguments (exceeds 4 allowed). Consider refactoring.
                    Open

                    def retrieve_phase(
                    Severity: Major
                    Found in source/tomopy/prep/phase.py - About 1 hr to fix

                      Function _find_center_cost has 8 arguments (exceeds 4 allowed). Consider refactoring.
                      Open

                      def _find_center_cost(
                      Severity: Major
                      Found in source/tomopy/recon/rotation.py - About 1 hr to fix

                        Function _dist_recon has 8 arguments (exceeds 4 allowed). Consider refactoring.
                        Open

                        def _dist_recon(tomo, center, recon, algorithm, args, kwargs, ncore, nchunk):
                        Severity: Major
                        Found in source/tomopy/recon/algorithm.py - About 1 hr to fix

                          Function distribute_jobs has 8 arguments (exceeds 4 allowed). Consider refactoring.
                          Open

                          def distribute_jobs(arr,
                          Severity: Major
                          Found in source/tomopy/util/mproc.py - About 1 hr to fix

                            Function find_center has 8 arguments (exceeds 4 allowed). Consider refactoring.
                            Open

                            def find_center(
                            Severity: Major
                            Found in source/tomopy/recon/rotation.py - About 1 hr to fix

                              Function project has 8 arguments (exceeds 4 allowed). Consider refactoring.
                              Open

                              def project(
                              Severity: Major
                              Found in source/tomopy/sim/project.py - About 1 hr to fix

                                Function init_shared has 8 arguments (exceeds 4 allowed). Consider refactoring.
                                Open

                                def init_shared(
                                Severity: Major
                                Found in source/tomopy/util/mproc.py - About 1 hr to fix

                                  Function c_sample has 8 arguments (exceeds 4 allowed). Consider refactoring.
                                  Open

                                  def c_sample(mode, arr, dx, dy, dz, level, axis, out):
                                  Severity: Major
                                  Found in source/tomopy/util/extern/misc.py - About 1 hr to fix
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