vanheeringen-lab/genomepy

# run travis on these branches (and all PRs)
branches:
  only:
  - master
  - develop

# use the minimal travis environment since we test in conda
language: minimal
dist: focal
os:
  - osx
  - linux

env:
  global:
    - CC_TEST_REPORTER_ID=951f438ac8a0fa93801ff0bf69922df59fe03800bf7ea8ab77a3c26cda444979

before_install:
  # setup mambaforge
  - wget -q -O Mambaforge.sh "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh"
  - bash Mambaforge.sh -b -p "${HOME}/conda" > /dev/null
  - source "${HOME}/conda/etc/profile.d/conda.sh"
  - source "${HOME}/conda/etc/profile.d/mamba.sh"
  - mamba activate

install:
  # install genomepy
  - mamba env create --name genomepy --file environment.yml
  - mamba activate genomepy
  - pip install . --no-deps --ignore-installed

before_script:
  # install codeclimate test coverage
  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
      wget -O cc-test-reporter https://codeclimate.com/downloads/test-reporter/test-reporter-latest-darwin-amd64;
      chmod +x ./cc-test-reporter;
      ./cc-test-reporter before-build;
    fi

script:
  - pytest -vvv
    --reruns 1 --reruns-delay 10
    --cov=genomepy --cov-config=tests/.coveragerc --cov-report=xml

after_script:
  # send the coverage data to Code Climate
  - if [ -f ./cc-test-reporter ]; then
      ./cc-test-reporter after-build -t coverage.py --exit-code $TRAVIS_TEST_RESULT;
    fi