wurmlab/sequenceserver

# If nektos/act is installed as a GitHub CLI extension...
# https://github.com/nektos/act#installation-as-github-cli-extension
# ...then run this locally with:
# gh act -j test
# Appending to $PATH: https://www.scivision.dev/github-actions-path-append/

  name: Tests
  on:
    push:
      branches:
       - master
    pull_request:
      branches:
       - master
  env:
    CC_TEST_REPORTER_ID: ec48bb03c72db6b43ce71fd488110b4707abfde4386c144d886d711378d8db64
  jobs:
    test:
      runs-on: ubuntu-latest
      steps:
        - uses: actions/checkout@v4

        - name: Get BLAST
          working-directory: /opt
          run: wget -c "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.16.0/ncbi-blast-2.16.0+-x64-linux.tar.gz" && tar xvf ncbi-blast-*.tar.gz

        - name: BLAST PATH
          run: mkdir /opt/bin && echo "/opt/bin:/opt/ncbi-blast-2.16.0+/bin" >> $GITHUB_PATH

        - name: Get CodeClimate
          working-directory: /opt
          run: wget -c "https://codeclimate.com/downloads/test-reporter/test-reporter-latest-linux-amd64" -O bin/cc-test-reporter && chmod +x bin/cc-test-reporter

        - uses: browser-actions/setup-chrome@latest
        - run: chrome --version

        - name: Set up Ruby
          uses: ruby/setup-ruby@v1
          with:
            ruby-version: '3.2'
            bundler-cache: true

        - name: Install Ruby dependencies
          run: bundle install

        - name: Setup Node.js
          uses: actions/setup-node@v4
          with:
            node-version: '22'

        - name: Install NPM Dependencies
          run: npm install

        - name: Instal Jest
          run: npm install --save-dev jest

        - name: Build JS and CSS assets
          run: npm run build

        - name: Check assets were compiled and checked-in
          continue-on-error: true
          run: |
            if git diff --quiet --exit-code -- public; then
              echo "No changes in 'public' directory."
            else
              echo "Changes detected in 'public' directory. Please compile assets locally and commit the changes."
              exit 1
            fi

        - name: Create SequenceServer config file
          run: bundle exec bin/sequenceserver -s -d spec/database/v5/sample

        - name: CodeClimate before-build hook
          run: cc-test-reporter before-build

        - name: Run main specs and import spec for BLAST 2.9.0+
          id: rspec_tests
          run: bundle exec rspec spec
          continue-on-error: true

        - name: upload rspec coverage report
          uses: actions/upload-artifact@v4
          with:
            name: rspec-code-coverage-report
            path: coverage

        - name: format-coverage (Rspec)
          run: cc-test-reporter format-coverage --output coverage/codeclimate_rspec.json

        - name: Jest tests
          id: jest_tests
          run: npm test -- --coverage
          continue-on-error: true

        - name: upload Jest coverage report
          uses: actions/upload-artifact@v4
          with:
            name: jest-code-coverage-report
            path: coverage/lcov-report/

        - name: format-coverage (Jest)
          run: cc-test-reporter format-coverage coverage/lcov.info --input-type lcov --output coverage/codeclimate_jest.json

        - name: sum-coverage
          run: cc-test-reporter sum-coverage --parts 2 coverage/codeclimate_*.json

        - name: upload coverage to code-CodeClimate
          run: cc-test-reporter upload-coverage

        - name: Assert both test suites passed in full
          if: steps.rspec_tests.outcome != 'success' || steps.jest_tests.outcome != 'success'
          run: exit 1