Function Track has a Cognitive Complexity of 61 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.Track = function() {
    this.build = function(instance, conf, data) {
        this.dispatch = d3.dispatch('mouseover', 'mouseout');
        this.loadData(data, instance);
        this.conf = this.processConf(conf, this.defaultConf, this.meta, instance, this);

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Function Track has 215 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Track = function() {
    this.build = function(instance, conf, data) {
        this.dispatch = d3.dispatch('mouseover', 'mouseout');
        this.loadData(data, instance);
        this.conf = this.processConf(conf, this.defaultConf, this.meta, instance, this);

Function graphIt has 131 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    graphIt($queryDiv, $graphDiv, index, howMany, opts, inhits) {
    /* barHeight: Height of each hit track.
     * legend: Height reserved for the overview legend.
     * margin: Margin around the svg element.
     */

Function Chord has 123 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Chord = function() {
    circosJS.Track.call(this);
    this.parseData = circosJS.parseChordData;
    this.applyRules = function(rules, data) {
        var datum, l, len, results, rule;

Function downloadsPanelJSX has 116 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    downloadsPanelJSX() {
        return (
            <div className="downloads">
                <div className="pl-px table mb-0 w-full">
                    <h4 className="text-sm font-bold mb-0 mt-2.5">

Function setupTooltip has 115 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    setupTooltip() {
        var selected = {};
        $('.circos-distribution').on(
            'click',
            _.bind(function (event) {

Function get_styles has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

var get_styles = function () {
    var styles = '';

    for (var i = 0; i < document.styleSheets.length; i++) {
        (function process_ss(ss) {

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Function Grapher has 89 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export default function Grapher(Graph) {
    return class extends React.Component {
        constructor(props) {
            super(props);
            this.name = Graph.name(this.props);

Function sharingPanelJSX has 79 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    sharingPanelJSX() {
        return (
            <div className="sharing-panel">
                <div className="pl-px table mb-0 w-full">
                    <h4 className="text-sm font-bold mb-0 mt-2.5">

Function graphControls has 76 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    graphControls($queryDiv, $graphDiv, isInit, opts, hits) {
        var MIN_HITS_TO_SHOW = 20;

        var totalHits, shownHits, lessButton, moreButton;

Function renderLayoutTicks has 74 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.renderLayoutTicks = function(conf, layout, d3, instance) {
    var blockTicks, displayLabel, ticks;
    blockTicks = function(d) {
        var k,space;
        k = (d.end - d.start) / d.len;

Function componentDidMount has 72 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    componentDidMount() {
        var self = this;
        var FASTA_FORMAT = /^>/;

        $(document).ready(function () {

Function removeTracks has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.Core.prototype.removeTracks = function(trackIds) {
    var id, l, len, ref, store, svg, trackId, type;
    svg = d3.select(this.conf.container);
    ref = this.tracks;
    for (type in ref) {

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Function drawLegend has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    drawLegend() {
        this.ratioHSP = [];
        _.each(
            this.chords_arr,
            _.bind(function (obj) {

Function pollPeriodically has 57 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    pollPeriodically(path, callback, errCallback) {
    var intervals = [200, 400, 800, 1200, 2000, 3000, 5000];
        function poll() {
            fetch(path)
                .then(response => {

Function Layout has 55 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Layout = function(conf, data) {
    var block_nb, gap, k, offset, ref, ref1, size, v;
    if (data == null) {
        circosJS.log(2, 'no layout data', '');
    }

Function renderDatabases has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderDatabases(category) {
        // Panel name and column width.
        var panelTitle = category[0].toUpperCase() +
            category.substring(1).toLowerCase() + ' databases';
        var columnClass = this.categories().length === 1 ? 'col-span-2' : '';

Function hspStats has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  hspStats() {
    // An array to hold text or span elements that make up the line.
    let line = [];

    // Bit score and total score.

Function assign has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

    Object.assign = function(target) {
        'use strict';
        var index, key, source;
        if (target === null) {
            throw new TypeError('Cannot convert undefined or null to object');

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Function render has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.Core.prototype.render = function(ids, removeTracks) {
    var name, ref, ref1, renderAll, svg, track, trackStore, trackType, tracks, translated;
    if (typeof ids === 'undefined') {
        renderAll = true;
        ids = [];

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