benchmarking/PHASE3-1KG/estd214_1000_Genomes_Consortium_Phase_3.2014-10-13.GRCh37.p4.Submitted.NA12878.bedpe from zeeev/wham

benchmarking/PHASE3-1KG/estd214_1000_Genomes_Consortium_Phase_3.2014-10-13.GRCh37.p4.Submitted.NA12878.bedpe
Summary

Maintainability

Test Coverage

Issues
1    3995267    3995267    1    3995267    3995267    1:mobile_element_insertion:0    .    .    .    ID=6997;Name=essv9843723;Alias=ALU_umary_ALU_5_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585053;submitter_variant_call_id=ALU_umary_ALU_5_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    5934300    5934300    1    5934300    5934300    2:mobile_element_insertion:0    .    .    .    ID=11578;Name=essv9845717;Alias=ALU_umary_ALU_10_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585099;submitter_variant_call_id=ALU_umary_ALU_10_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    7570073    7570073    1    7571520    7571520    3:copy_number_loss:1447    .    .    .    ID=14704;Name=essv9847267;Alias=BI_GS_DEL1_B5_P0008_654_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585126;Start_range=7570074,7570074;End_range=7571521,7571521;submitter_variant_call_id=BI_GS_DEL1_B5_P0008_654_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    9595359    9595359    1    9597868    9597868    4:copy_number_loss:2509    .    .    .    ID=21734;Name=essv9850877;Alias=YL_CN_GBR_48_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585179;Start_range=9594360,9595860;End_range=9597369,9598869;submitter_variant_call_id=YL_CN_GBR_48_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    10482498    10482498    1    10483789    10483789    5:copy_number_loss:1291    .    .    .    ID=25474;Name=essv9852748;Alias=UW_VH_0_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585200;Start_range=10481995,10482499;End_range=10483790,10484258;submitter_variant_call_id=UW_VH_0_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    11682872    11682872    1    11683188    11683188    6:copy_number_loss:316    .    .    .    ID=30821;Name=essv9855055;Alias=UW_VH_58_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585224;Start_range=11682298,11682873;End_range=11683189,11683624;submitter_variant_call_id=UW_VH_58_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    11830219    11830219    1    11830219    11830219    7:mobile_element_insertion:0    .    .    .    ID=31840;Name=essv9855795;Alias=SVA_umary_SVA_5_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585226;submitter_variant_call_id=SVA_umary_SVA_5_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    13854374    13854374    1    13854374    13854374    8:mobile_element_insertion:0    .    .    .    ID=41233;Name=essv9860103;Alias=ALU_umary_ALU_36_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585261;submitter_variant_call_id=ALU_umary_ALU_36_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    16151681    16151681    1    16155631    16155631    9:copy_number_loss:3950    .    .    .    ID=50404;Name=essv9864467;Alias=YL_CN_FIN_64_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585321;Start_range=16150682,16152182;End_range=16155132,16156632;submitter_variant_call_id=YL_CN_FIN_64_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    17026063    17026063    1    17052111    17052111    10:copy_number_gain:26048    .    .    .    ID=63352;Name=essv9868022;Alias=DUP_gs_CNV_1_17026064_17052112_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3585345;submitter_variant_call_id=DUP_gs_CNV_1_17026064_17052112_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    18792553    18792553    1    18792553    18792553    11:indel:0    .    .    .    ID=77944;Name=essv9878075;Alias=PHASE3_V1_SV_10_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585388;submitter_variant_call_id=PHASE3_V1_SV_10_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    21786417    21786417    1    21786694    21786694    12:copy_number_loss:277    .    .    .    ID=95932;Name=essv9885940;Alias=BI_GS_DEL1_B3_P0022_20_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585446;Start_range=21786418,21786418;End_range=21786695,21786695;submitter_variant_call_id=BI_GS_DEL1_B3_P0022_20_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    21787745    21787745    1    21787745    21787745    13:indel:0    .    .    .    ID=97315;Name=essv9888160;Alias=PHASE3_V1_SV_12_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585447;submitter_variant_call_id=PHASE3_V1_SV_12_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    23981141    23981141    1    23981141    23981141    14:mobile_element_insertion:0    .    .    .    ID=101122;Name=essv9889912;Alias=ALU_umary_ALU_69_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585486;submitter_variant_call_id=ALU_umary_ALU_69_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    24941276    24941276    1    24941276    24941276    15:mobile_element_insertion:0    .    .    .    ID=105155;Name=essv9891894;Alias=ALU_umary_ALU_72_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585508;submitter_variant_call_id=ALU_umary_ALU_72_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    25592641    25592641    1    25661221    25661221    16:copy_number_loss:68580    .    .    .    ID=107284;Name=essv9892865;Alias=DUP_gs_CNV_1_25592642_25661222_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585521;submitter_variant_call_id=DUP_gs_CNV_1_25592642_25661222_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    31574933    31574933    1    31577198    31577198    17:copy_number_loss:2265    .    .    .    ID=112672;Name=essv9895565;Alias=SI_BD_281_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585642;Start_range=31574868,31575093;End_range=31577149,31577265;submitter_variant_call_id=SI_BD_281_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    34568178    34568178    1    34568178    34568178    18:indel:0    .    .    .    ID=117999;Name=essv9898260;Alias=PHASE3_V1_SV_22_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585702;submitter_variant_call_id=PHASE3_V1_SV_22_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    35101426    35101426    1    35111984    35111984    19:copy_number_loss:10558    .    .    .    ID=120464;Name=essv9899418;Alias=BI_GS_DEL1_B2_P0036_63_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585709;Start_range=35101427,35101427;End_range=35111985,35111985;submitter_variant_call_id=BI_GS_DEL1_B2_P0036_63_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    35627103    35627103    1    35627430    35627430    20:copy_number_loss:327    .    .    .    ID=124443;Name=essv9901092;Alias=BI_GS_DEL1_B3_P0036_21_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585717;Start_range=35627063,35627146;End_range=35627390,35627473;submitter_variant_call_id=BI_GS_DEL1_B3_P0036_21_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    36733281    36733281    1    36733514    36733514    21:copy_number_loss:233    .    .    .    ID=133336;Name=essv9904293;Alias=BI_GS_DEL1_B3_P0037_15_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585731;Start_range=36733282,36733282;End_range=36733515,36733515;submitter_variant_call_id=BI_GS_DEL1_B3_P0037_15_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    36749217    36749217    1    36749217    36749217    22:indel:0    .    .    .    ID=135856;Name=essv9906705;Alias=PHASE3_V1_SV_24_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585732;submitter_variant_call_id=PHASE3_V1_SV_24_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    37215809    37215809    1    37215809    37215809    23:mobile_element_insertion:0    .    .    .    ID=138913;Name=essv9908437;Alias=ALU_umary_ALU_104_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585740;submitter_variant_call_id=ALU_umary_ALU_104_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    37816477    37816477    1    37816721    37816721    24:copy_number_loss:244    .    .    .    ID=142530;Name=essv9909879;Alias=UW_VH_11167_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585748;Start_range=37816003,37816478;End_range=37816722,37817168;submitter_variant_call_id=UW_VH_11167_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    38077349    38077349    1    38077349    38077349    25:indel:0    .    .    .    ID=145627;Name=essv9911980;Alias=PHASE3_V1_SV_26_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585755;submitter_variant_call_id=PHASE3_V1_SV_26_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    38241395    38241395    1    38241395    38241395    26:mobile_element_insertion:0    .    .    .    ID=147098;Name=essv9913827;Alias=SVA_umary_SVA_18_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585760;submitter_variant_call_id=SVA_umary_SVA_18_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    39998245    39998245    1    40001287    40001287    27:copy_number_loss:3042    .    .    .    ID=151652;Name=essv9916051;Alias=BI_GS_DEL1_B2_P0040_649_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3585790;Start_range=39998245,39998247;End_range=40001287,40001289;submitter_variant_call_id=BI_GS_DEL1_B2_P0040_649_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    41835543    41835543    1    41835543    41835543    28:indel:0    .    .    .    ID=157764;Name=essv9919270;Alias=PHASE3_V1_SV_29_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3585827;submitter_variant_call_id=PHASE3_V1_SV_29_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    44059289    44059289    1    44059949    44059949    29:inversion:660    .    .    .    ID=167444;Name=essv9923334;Alias=INV_delly_INV00003623_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3585870;Start_range=44059229,44059351;End_range=44059889,44060011;submitter_variant_call_id=INV_delly_INV00003623_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    44208923    44208923    1    44208923    44208923    30:mobile_element_insertion:0    .    .    .    ID=168489;Name=essv9924377;Alias=ALU_umary_ALU_127_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3585873;submitter_variant_call_id=ALU_umary_ALU_127_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    53594103    53594103    1    53594941    53594941    31:copy_number_loss:838    .    .    .    ID=181820;Name=essv9930097;Alias=UW_VH_20946_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586062;Start_range=53593710,53594104;End_range=53594942,53595718;submitter_variant_call_id=UW_VH_20946_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    53594174    53594174    1    53595597    53595597    32:copy_number_loss:1423    .    .    .    ID=183036;Name=essv9930972;Alias=UW_VH_1672_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586063;Start_range=53593850,53594175;End_range=53595598,53595840;submitter_variant_call_id=UW_VH_1672_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    53595111    53595111    1    53595601    53595601    33:copy_number_loss:490    .    .    .    ID=183700;Name=essv9931847;Alias=BI_GS_DEL1_B2_P0054_350_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586064;Start_range=53595111,53595114;End_range=53595601,53595604;submitter_variant_call_id=BI_GS_DEL1_B2_P0054_350_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    55334337    55334337    1    55334337    55334337    34:indel:0    .    .    .    ID=189972;Name=essv9934848;Alias=PHASE3_V1_SV_38_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586103;submitter_variant_call_id=PHASE3_V1_SV_38_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    56879061    56879061    1    56879061    56879061    35:mobile_element_insertion:0    .    .    .    ID=194959;Name=essv9937208;Alias=ALU_umary_ALU_176_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586125;submitter_variant_call_id=ALU_umary_ALU_176_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    58071868    58071868    1    58071868    58071868    36:mobile_element_insertion:0    .    .    .    ID=197395;Name=essv9938509;Alias=ALU_umary_ALU_182_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586146;submitter_variant_call_id=ALU_umary_ALU_182_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    58743909    58743909    1    58744825    58744825    37:copy_number_loss:916    .    .    .    ID=203857;Name=essv9941040;Alias=BI_GS_DEL1_B1_P0059_752_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586159;Start_range=58743910,58743910;End_range=58744826,58744826;submitter_variant_call_id=BI_GS_DEL1_B1_P0059_752_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    59205316    59205316    1    59205316    59205316    38:mobile_element_insertion:0    .    .    .    ID=205328;Name=essv9942161;Alias=ALU_umary_ALU_189_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586172;submitter_variant_call_id=ALU_umary_ALU_189_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    59591482    59591482    1    59591482    59591482    39:mobile_element_insertion:0    .    .    .    ID=208057;Name=essv9942728;Alias=ALU_umary_ALU_192_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586176;submitter_variant_call_id=ALU_umary_ALU_192_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    59871875    59871875    1    59871875    59871875    40:mobile_element_insertion:0    .    .    .    ID=209282;Name=essv9943660;Alias=ALU_umary_ALU_194_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586182;submitter_variant_call_id=ALU_umary_ALU_194_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    60048627    60048627    1    60049654    60049654    41:copy_number_loss:1027    .    .    .    ID=210519;Name=essv9944922;Alias=UW_VH_10127_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586187;Start_range=60048183,60048628;End_range=60049655,60050039;submitter_variant_call_id=UW_VH_10127_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    64850192    64850192    1    64850192    64850192    42:mobile_element_insertion:0    .    .    .    ID=227597;Name=essv9952588;Alias=SVA_umary_SVA_35_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586262;submitter_variant_call_id=SVA_umary_SVA_35_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    64958077    64958077    1    64958077    64958077    43:mobile_element_insertion:0    .    .    .    ID=229667;Name=essv9954131;Alias=ALU_umary_ALU_211_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586267;submitter_variant_call_id=ALU_umary_ALU_211_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    66055940    66055940    1    66055940    66055940    44:mobile_element_insertion:0    .    .    .    ID=236729;Name=essv9958208;Alias=ALU_umary_ALU_216_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586287;submitter_variant_call_id=ALU_umary_ALU_216_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    68007969    68007969    1    68008810    68008810    45:copy_number_loss:841    .    .    .    ID=241333;Name=essv9960484;Alias=BI_GS_DEL1_B3_P0069_2_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586309;Start_range=68007967,68007974;End_range=68008808,68008815;submitter_variant_call_id=BI_GS_DEL1_B3_P0069_2_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    70061669    70061669    1    70061669    70061669    46:mobile_element_insertion:0    .    .    .    ID=246561;Name=essv9961968;Alias=ALU_umary_ALU_224_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586334;submitter_variant_call_id=ALU_umary_ALU_224_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    70912432    70912432    1    70912432    70912432    47:mobile_element_insertion:0    .    .    .    ID=249702;Name=essv9964342;Alias=ALU_umary_ALU_234_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586356;submitter_variant_call_id=ALU_umary_ALU_234_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    72514120    72514120    1    72514120    72514120    48:mobile_element_insertion:0    .    .    .    ID=259188;Name=essv9966216;Alias=ALU_umary_ALU_242_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586398;submitter_variant_call_id=ALU_umary_ALU_242_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    72639019    72639019    1    72639019    72639019    49:mobile_element_insertion:0    .    .    .    ID=259985;Name=essv9966950;Alias=ALU_umary_ALU_244_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586405;submitter_variant_call_id=ALU_umary_ALU_244_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    72766342    72766342    1    72811814    72811814    50:copy_number_loss:45472    .    .    .    ID=262439;Name=essv9969512;Alias=BI_GS_CNV_1_72766343_72811815_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586410;Start_range=72765843,72766343;End_range=72811815,72812315;submitter_variant_call_id=BI_GS_CNV_1_72766343_72811815_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    72778536    72778536    1    72784593    72784593    51:copy_number_loss:6057    .    .    .    ID=264634;Name=essv9971699;Alias=BI_GS_DEL1_B3_P0073_40_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586411;Start_range=72778473,72778601;End_range=72784530,72784658;submitter_variant_call_id=BI_GS_DEL1_B3_P0073_40_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    74312424    74312424    1    74312677    74312677    52:copy_number_loss:253    .    .    .    ID=268277;Name=essv9973718;Alias=BI_GS_DEL1_B2_P0075_218_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586443;Start_range=74312425,74312425;End_range=74312678,74312678;submitter_variant_call_id=BI_GS_DEL1_B2_P0075_218_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    75148235    75148235    1    75148235    75148235    53:indel:0    .    .    .    ID=274383;Name=essv9975765;Alias=PHASE3_V1_SV_53_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586465;submitter_variant_call_id=PHASE3_V1_SV_53_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    75192906    75192906    1    75192906    75192906    54:mobile_element_insertion:0    .    .    .    ID=274716;Name=essv9976411;Alias=L1_umary_LINE1_61_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586468;submitter_variant_call_id=L1_umary_LINE1_61_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    75301684    75301684    1    75301684    75301684    55:mobile_element_insertion:0    .    .    .    ID=275608;Name=essv9977061;Alias=ALU_umary_ALU_259_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586471;submitter_variant_call_id=ALU_umary_ALU_259_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    77240062    77240062    1    77240062    77240062    56:indel:0    .    .    .    ID=280305;Name=essv9979030;Alias=PHASE3_V1_SV_56_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586505;submitter_variant_call_id=PHASE3_V1_SV_56_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    77764993    77764993    1    77764993    77764993    57:mobile_element_insertion:0    .    .    .    ID=282689;Name=essv9980837;Alias=ALU_umary_ALU_274_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586519;submitter_variant_call_id=ALU_umary_ALU_274_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    78607066    78607066    1    78607066    78607066    58:mobile_element_insertion:0    .    .    .    ID=285199;Name=essv9981725;Alias=ALU_umary_ALU_276_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586535;submitter_variant_call_id=ALU_umary_ALU_276_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    78649156    78649156    1    78654147    78654147    59:copy_number_loss:4991    .    .    .    ID=286173;Name=essv9982401;Alias=UW_VH_86_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586536;Start_range=78648857,78649157;End_range=78654148,78654510;submitter_variant_call_id=UW_VH_86_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    79108844    79108844    1    79108844    79108844    60:mobile_element_insertion:0    .    .    .    ID=287881;Name=essv9982872;Alias=ALU_umary_ALU_277_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586553;submitter_variant_call_id=ALU_umary_ALU_277_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    79331207    79331207    1    79331207    79331207    61:mobile_element_insertion:0    .    .    .    ID=290595;Name=essv9983577;Alias=ALU_umary_ALU_279_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586561;submitter_variant_call_id=ALU_umary_ALU_279_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    79582081    79582081    1    79582081    79582081    62:mobile_element_insertion:0    .    .    .    ID=292212;Name=essv9985792;Alias=ALU_umary_ALU_286_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586572;submitter_variant_call_id=ALU_umary_ALU_286_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    80221780    80221780    1    80223031    80223031    63:copy_number_loss:1251    .    .    .    ID=297784;Name=essv9987765;Alias=BI_GS_DEL1_B4_P0081_42_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586584;Start_range=80221781,80221781;End_range=80223032,80223032;submitter_variant_call_id=BI_GS_DEL1_B4_P0081_42_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    80299105    80299105    1    80299105    80299105    64:mobile_element_insertion:0    .    .    .    ID=298621;Name=essv9988915;Alias=ALU_umary_ALU_288_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586586;submitter_variant_call_id=ALU_umary_ALU_288_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    81524135    81524135    1    81524135    81524135    65:mobile_element_insertion:0    .    .    .    ID=304367;Name=essv9991069;Alias=ALU_umary_ALU_298_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586609;submitter_variant_call_id=ALU_umary_ALU_298_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    83802379    83802379    1    83979034    83979034    66:copy_number_gain:176655    .    .    .    ID=313274;Name=essv9995476;Alias=DUP_uwash_chr1_83802380_83979035_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3586641;submitter_variant_call_id=DUP_uwash_chr1_83802380_83979035_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    84517857    84517857    1    84524769    84524769    67:copy_number_loss:6912    .    .    .    ID=321446;Name=essv9998646;Alias=YL_CN_MXL_110_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586659;Start_range=84516858,84518358;End_range=84524270,84525770;submitter_variant_call_id=YL_CN_MXL_110_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    84913273    84913273    1    84913273    84913273    68:mobile_element_insertion:0    .    .    .    ID=323973;Name=essv10001337;Alias=ALU_umary_ALU_313_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586667;submitter_variant_call_id=ALU_umary_ALU_313_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    85620126    85620126    1    85620126    85620126    69:mobile_element_insertion:0    .    .    .    ID=330953;Name=essv10003453;Alias=ALU_umary_ALU_319_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586678;submitter_variant_call_id=ALU_umary_ALU_319_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    85980460    85980460    1    86006143    86006143    70:copy_number_gain:25683    .    .    .    ID=335545;Name=essv10006270;Alias=DUP_gs_CNV_1_85980461_86006144_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3586683;submitter_variant_call_id=DUP_gs_CNV_1_85980461_86006144_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    88813624    88813624    1    88813624    88813624    71:mobile_element_insertion:0    .    .    .    ID=340046;Name=essv10008807;Alias=ALU_umary_ALU_333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586729;submitter_variant_call_id=ALU_umary_ALU_333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    88873547    88873547    1    88873547    88873547    72:indel:0    .    .    .    ID=340319;Name=essv10009153;Alias=PHASE3_V1_SV_61_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586730;submitter_variant_call_id=PHASE3_V1_SV_61_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    89475929    89475929    1    89478612    89478612    73:copy_number_loss:2683    .    .    .    ID=343376;Name=essv10010626;Alias=UW_VH_1_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586751;Start_range=89475448,89475930;End_range=89478613,89479051;submitter_variant_call_id=UW_VH_1_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    92232050    92232050    1    92233330    92233330    74:copy_number_loss:1280    .    .    .    ID=352161;Name=essv10013843;Alias=UW_VH_25108_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586795;Start_range=92231727,92232051;End_range=92233331,92233657;submitter_variant_call_id=UW_VH_25108_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    92681353    92681353    1    92681353    92681353    75:indel:0    .    .    .    ID=354238;Name=essv10016490;Alias=PHASE3_V1_SV_65_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586808;submitter_variant_call_id=PHASE3_V1_SV_65_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    93167529    93167529    1    93167529    93167529    76:mobile_element_insertion:0    .    .    .    ID=362054;Name=essv10018609;Alias=ALU_umary_ALU_356_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586815;submitter_variant_call_id=ALU_umary_ALU_356_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    93498231    93498231    1    93498231    93498231    77:mobile_element_insertion:0    .    .    .    ID=365034;Name=essv10021515;Alias=ALU_umary_ALU_357_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586824;submitter_variant_call_id=ALU_umary_ALU_357_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    94288371    94288371    1    94291259    94291259    78:copy_number_loss:2888    .    .    .    ID=368550;Name=essv10023329;Alias=BI_GS_DEL1_B1_P0095_311_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3586832;Start_range=94288372,94288372;End_range=94291260,94291260;submitter_variant_call_id=BI_GS_DEL1_B1_P0095_311_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    99610527    99610527    1    99610527    99610527    79:mobile_element_insertion:0    .    .    .    ID=378775;Name=essv10027522;Alias=ALU_umary_ALU_390_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586915;submitter_variant_call_id=ALU_umary_ALU_390_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    100994220    100994220    1    100994220    100994220    80:mobile_element_insertion:0    .    .    .    ID=384968;Name=essv10031678;Alias=ALU_umary_ALU_402_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3586943;submitter_variant_call_id=ALU_umary_ALU_402_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    103110989    103110989    1    103110989    103110989    81:indel:0    .    .    .    ID=397865;Name=essv10038168;Alias=PHASE3_V1_SV_69_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3586997;submitter_variant_call_id=PHASE3_V1_SV_69_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    105218661    105218661    1    105219459    105219459    82:copy_number_loss:798    .    .    .    ID=414454;Name=essv10044897;Alias=UW_VH_3050_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587054;Start_range=105218333,105218662;End_range=105219460,105219824;submitter_variant_call_id=UW_VH_3050_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    105231110    105231110    1    105231110    105231110    83:mobile_element_insertion:0    .    .    .    ID=414796;Name=essv10045605;Alias=ALU_umary_ALU_422_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587055;submitter_variant_call_id=ALU_umary_ALU_422_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    108402971    108402971    1    108405498    108405498    84:copy_number_loss:2527    .    .    .    ID=426596;Name=essv10051607;Alias=UW_VH_102_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587116;Start_range=108402507,108402972;End_range=108405499,108405895;submitter_variant_call_id=UW_VH_102_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    108733287    108733287    1    108737236    108737236    85:copy_number_loss:3949    .    .    .    ID=427743;Name=essv10052641;Alias=DUP_gs_CNV_1_108733288_108737237_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587125;submitter_variant_call_id=DUP_gs_CNV_1_108733288_108737237_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    109573239    109573239    1    109575183    109575183    86:copy_number_loss:1944    .    .    .    ID=431114;Name=essv10054233;Alias=UW_VH_1350_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587144;Start_range=109572821,109573240;End_range=109575184,109575615;submitter_variant_call_id=UW_VH_1350_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    110187158    110187158    1    110191391    110191391    87:copy_number_loss:4233    .    .    .    ID=439420;Name=essv10056159;Alias=EM_DL_DEL04008_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587152;Start_range=110187009,110187309;End_range=110191242,110191542;submitter_variant_call_id=EM_DL_DEL04008_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    110225018    110225018    1    110245279    110245279    88:copy_number_loss:20261    .    .    .    ID=441688;Name=essv10058327;Alias=YL_CN_MSL_117_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587154;Start_range=110224019,110225519;End_range=110244780,110246280;submitter_variant_call_id=YL_CN_MSL_117_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    110230074    110230074    1    110241246    110241246    89:copy_number_loss:11172    .    .    .    ID=442883;Name=essv10060476;Alias=DUP_gs_CNV_1_110230075_110241247_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587155;submitter_variant_call_id=DUP_gs_CNV_1_110230075_110241247_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    111316418    111316418    1    111316418    111316418    90:indel:0    .    .    .    ID=451063;Name=essv10062995;Alias=PHASE3_V1_SV_77_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3587171;submitter_variant_call_id=PHASE3_V1_SV_77_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    111802596    111802596    1    111802596    111802596    91:mobile_element_insertion:0    .    .    .    ID=456917;Name=essv10065509;Alias=SVA_umary_SVA_45_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587179;submitter_variant_call_id=SVA_umary_SVA_45_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    111896186    111896186    1    111896186    111896186    92:mobile_element_insertion:0    .    .    .    ID=458072;Name=essv10066750;Alias=SVA_umary_SVA_46_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587182;submitter_variant_call_id=SVA_umary_SVA_46_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    112764715    112764715    1    112764715    112764715    93:indel:0    .    .    .    ID=470087;Name=essv10071937;Alias=PHASE3_V1_SV_78_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3587205;submitter_variant_call_id=PHASE3_V1_SV_78_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    112834895    112834895    1    112837823    112837823    94:copy_number_loss:2928    .    .    .    ID=472899;Name=essv10074037;Alias=YL_CN_ACB_172_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587207;Start_range=112833896,112835396;End_range=112837324,112838824;submitter_variant_call_id=YL_CN_ACB_172_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    112992008    112992008    1    112992008    112992008    95:mobile_element_insertion:0    .    .    .    ID=474986;Name=essv10075978;Alias=ALU_umary_ALU_454_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587212;submitter_variant_call_id=ALU_umary_ALU_454_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    115201400    115201400    1    115201400    115201400    96:mobile_element_insertion:0    .    .    .    ID=481533;Name=essv10079603;Alias=ALU_umary_ALU_464_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587273;submitter_variant_call_id=ALU_umary_ALU_464_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    116229467    116229467    1    116232838    116232838    97:copy_number_loss:3371    .    .    .    ID=483663;Name=essv10080577;Alias=BI_GS_DEL1_B2_P0117_180_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587290;Start_range=116229468,116229469;End_range=116232839,116232840;submitter_variant_call_id=BI_GS_DEL1_B2_P0117_180_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    119080703    119080703    1    119080703    119080703    98:mobile_element_insertion:0    .    .    .    ID=489005;Name=essv10082912;Alias=ALU_umary_ALU_481_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587331;submitter_variant_call_id=ALU_umary_ALU_481_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    121171964    121171964    1    121349587    121349587    99:copy_number_gain:177623    .    .    .    ID=498761;Name=essv10086955;Alias=DUP_uwash_chr1_121171965_121349588_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587358;submitter_variant_call_id=DUP_uwash_chr1_121171965_121349588_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    143984621    143984621    1    144094732    144094732    100:copy_number_gain:110111    .    .    .    ID=525997;Name=essv10090456;Alias=DUP_gs_CNV_1_143984622_144094733_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587386;submitter_variant_call_id=DUP_gs_CNV_1_143984622_144094733_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    144468089    144468089    1    144480622    144480622    101:copy_number_loss:12533    .    .    .    ID=527913;Name=essv10092334;Alias=BI_GS_CNV_1_144468090_144480623_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587388;Start_range=144467590,144468090;End_range=144480623,144481123;submitter_variant_call_id=BI_GS_CNV_1_144468090_144480623_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    144691201    144691201    1    144710621    144710621    102:copy_number_gain:19420    .    .    .    ID=530347;Name=essv10094632;Alias=DUP_gs_CNV_1_144691202_144710622_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587391;submitter_variant_call_id=DUP_gs_CNV_1_144691202_144710622_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    144839079    144839079    1    144849491    144849491    103:copy_number_gain:10412    .    .    .    ID=532656;Name=essv10097042;Alias=DUP_gs_CNV_1_144839080_144849492_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587393;submitter_variant_call_id=DUP_gs_CNV_1_144839080_144849492_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    144862243    144862243    1    144892801    144892801    104:copy_number_gain:30558    .    .    .    ID=534010;Name=essv10099547;Alias=DUP_gs_CNV_1_144862244_144892802_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587395;submitter_variant_call_id=DUP_gs_CNV_1_144862244_144892802_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    144913698    144913698    1    144951390    144951390    105:copy_number_gain:37692    .    .    .    ID=537507;Name=essv10102068;Alias=DUP_gs_CNV_1_144913699_144951391_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587398;submitter_variant_call_id=DUP_gs_CNV_1_144913699_144951391_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    144951025    144951025    1    144951025    144951025    106:mobile_element_insertion:0    .    .    .    ID=538673;Name=essv10103162;Alias=ALU_umary_ALU_493_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587403;submitter_variant_call_id=ALU_umary_ALU_493_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    144954626    144954626    1    144955375    144955375    107:copy_number_loss:749    .    .    .    ID=539017;Name=essv10103925;Alias=SI_BD_758_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587404;Start_range=144954472,144954677;End_range=144955326,144955531;submitter_variant_call_id=SI_BD_758_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    144973076    144973076    1    144989256    144989256    108:copy_number_gain:16180    .    .    .    ID=540543;Name=essv10105933;Alias=DUP_gs_CNV_1_144973077_144989257_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587405;submitter_variant_call_id=DUP_gs_CNV_1_144973077_144989257_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    145098256    145098256    1    145098256    145098256    109:mobile_element_insertion:0    .    .    .    ID=542535;Name=essv10106946;Alias=ALU_umary_ALU_494_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587407;submitter_variant_call_id=ALU_umary_ALU_494_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    145120319    145120319    1    145182149    145182149    110:copy_number_gain:61830    .    .    .    ID=544363;Name=essv10108828;Alias=DUP_gs_CNV_1_145120320_145182150_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587409;submitter_variant_call_id=DUP_gs_CNV_1_145120320_145182150_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    145152735    145152735    1    145152735    145152735    111:mobile_element_insertion:0    .    .    .    ID=545598;Name=essv10110678;Alias=ALU_umary_ALU_496_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587411;submitter_variant_call_id=ALU_umary_ALU_496_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    145211322    145211322    1    145211322    145211322    112:mobile_element_insertion:0    .    .    .    ID=548128;Name=essv10112224;Alias=ALU_umary_ALU_497_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587412;submitter_variant_call_id=ALU_umary_ALU_497_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    146081806    146081806    1    146164362    146164362    113:copy_number_gain:82556    .    .    .    ID=551127;Name=essv10115452;Alias=DUP_uwash_chr1_146081807_146164363_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587426;submitter_variant_call_id=DUP_uwash_chr1_146081807_146164363_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    146658218    146658218    1    146658218    146658218    114:mobile_element_insertion:0    .    .    .    ID=556173;Name=essv10116408;Alias=ALU_umary_ALU_501_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587434;submitter_variant_call_id=ALU_umary_ALU_501_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    148832243    148832243    1    148954131    148954131    115:copy_number_gain:121888    .    .    .    ID=562177;Name=essv10119046;Alias=DUP_gs_CNV_1_148832244_148954132_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3587460;submitter_variant_call_id=DUP_gs_CNV_1_148832244_148954132_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149015522    149015522    1    149036626    149036626    116:copy_number_gain:21104    .    .    .    ID=571944;Name=essv10121564;Alias=DUP_gs_CNV_1_149015523_149036627_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3587464;submitter_variant_call_id=DUP_gs_CNV_1_149015523_149036627_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149231191    149231191    1    149241215    149241215    117:copy_number_gain:10024    .    .    .    ID=584178;Name=essv10127440;Alias=DUP_gs_CNV_1_149231192_149241216_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587477;submitter_variant_call_id=DUP_gs_CNV_1_149231192_149241216_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149249428    149249428    1    149284876    149284876    118:copy_number_gain:35448    .    .    .    ID=587858;Name=essv10131186;Alias=DUP_gs_CNV_1_149249429_149284877_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3587484;submitter_variant_call_id=DUP_gs_CNV_1_149249429_149284877_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149289437    149289437    1    149358444    149358444    119:copy_number_gain:69007    .    .    .    ID=591130;Name=essv10133713;Alias=DUP_gs_CNV_1_149289438_149358445_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3587486;submitter_variant_call_id=DUP_gs_CNV_1_149289438_149358445_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149532288    149532288    1    149572951    149572951    120:copy_number_loss:40663    .    .    .    ID=596771;Name=essv10139550;Alias=BI_GS_CNV_1_149532289_149572952_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587491;Start_range=149531789,149532289;End_range=149572952,149573452;submitter_variant_call_id=BI_GS_CNV_1_149532289_149572952_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    149725224    149725224    1    149725224    149725224    121:mobile_element_insertion:0    .    .    .    ID=598564;Name=essv10141317;Alias=ALU_umary_ALU_509_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587494;submitter_variant_call_id=ALU_umary_ALU_509_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    150037842    150037842    1    150037842    150037842    122:indel:0    .    .    .    ID=602539;Name=essv10143530;Alias=PHASE3_V1_SV_81_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3587499;submitter_variant_call_id=PHASE3_V1_SV_81_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    152555494    152555494    1    152586931    152586931    123:copy_number_loss:31437    .    .    .    ID=610897;Name=essv10147652;Alias=BI_GS_CNV_1_152555495_152586932_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587563;Start_range=152554995,152555495;End_range=152586932,152587432;submitter_variant_call_id=BI_GS_CNV_1_152555495_152586932_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    152760083    152760083    1    152770546    152770546    124:copy_number_loss:10463    .    .    .    ID=614175;Name=essv10148922;Alias=UW_VH_24538_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587569;Start_range=152759715,152760084;End_range=152770547,152770666;submitter_variant_call_id=UW_VH_24538_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    153133702    153133702    1    153133959    153133959    125:copy_number_loss:257    .    .    .    ID=616773;Name=essv10150602;Alias=BI_GS_DEL1_B5_P0154_145_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587577;Start_range=153133703,153133704;End_range=153133960,153133961;submitter_variant_call_id=BI_GS_DEL1_B5_P0154_145_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    157540654    157540654    1    157540870    157540870    126:copy_number_loss:216    .    .    .    ID=628151;Name=essv10156339;Alias=BI_GS_DEL1_B4_P0158_141_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587652;Start_range=157540655,157540655;End_range=157540871,157540871;submitter_variant_call_id=BI_GS_DEL1_B4_P0158_141_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    158867539    158867539    1    158869979    158869979    127:copy_number_loss:2440    .    .    .    ID=640704;Name=essv10162541;Alias=BI_GS_DEL1_B1_P0159_764_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587687;Start_range=158867540,158867540;End_range=158869980,158869980;submitter_variant_call_id=BI_GS_DEL1_B1_P0159_764_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    158961352    158961352    1    158966207    158966207    128:copy_number_loss:4855    .    .    .    ID=644120;Name=essv10163561;Alias=BI_GS_DEL1_B1_P0159_834_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587689;Start_range=158961353,158961353;End_range=158966208,158966208;submitter_variant_call_id=BI_GS_DEL1_B1_P0159_834_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    159014809    159014809    1    159018678    159018678    129:copy_number_loss:3869    .    .    .    ID=644787;Name=essv10163768;Alias=DUP_gs_CNV_1_159014810_159018679_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587690;submitter_variant_call_id=DUP_gs_CNV_1_159014810_159018679_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    159648707    159648707    1    159649658    159649658    130:copy_number_loss:951    .    .    .    ID=645820;Name=essv10165684;Alias=BI_GS_DEL1_B2_P0160_484_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3587701;Start_range=159648708,159648708;End_range=159649659,159649659;submitter_variant_call_id=BI_GS_DEL1_B2_P0160_484_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    162761321    162761321    1    162761321    162761321    131:mobile_element_insertion:0    .    .    .    ID=659379;Name=essv10171642;Alias=ALU_umary_ALU_549_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587754;submitter_variant_call_id=ALU_umary_ALU_549_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    163088864    163088864    1    163088864    163088864    132:mobile_element_insertion:0    .    .    .    ID=662606;Name=essv10172920;Alias=ALU_umary_ALU_552_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587760;submitter_variant_call_id=ALU_umary_ALU_552_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    164204715    164204715    1    164204715    164204715    133:indel:0    .    .    .    ID=668433;Name=essv10175934;Alias=PHASE3_V1_SV_88_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3587787;submitter_variant_call_id=PHASE3_V1_SV_88_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    170964062    170964062    1    170964062    170964062    134:mobile_element_insertion:0    .    .    .    ID=693447;Name=essv10187942;Alias=ALU_umary_ALU_589_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587908;submitter_variant_call_id=ALU_umary_ALU_589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    174333014    174333014    1    174333014    174333014    135:mobile_element_insertion:0    .    .    .    ID=695379;Name=essv10188988;Alias=ALU_umary_ALU_602_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3587959;submitter_variant_call_id=ALU_umary_ALU_602_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    175396005    175396005    1    175396005    175396005    136:indel:0    .    .    .    ID=701882;Name=essv10192510;Alias=PHASE3_V1_SV_95_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3587987;submitter_variant_call_id=PHASE3_V1_SV_95_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    180749764    180749764    1    180755413    180755413    137:copy_number_loss:5649    .    .    .    ID=719090;Name=essv10200528;Alias=UW_VH_4540_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588073;Start_range=180749436,180749765;End_range=180755414,180755796;submitter_variant_call_id=UW_VH_4540_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    180828203    180828203    1    180828203    180828203    138:indel:0    .    .    .    ID=720922;Name=essv10202284;Alias=PHASE3_V1_SV_97_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588074;submitter_variant_call_id=PHASE3_V1_SV_97_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    181043347    181043347    1    181043807    181043807    139:copy_number_loss:460    .    .    .    ID=727237;Name=essv10204999;Alias=BI_GS_DEL1_B4_P0182_9_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588077;Start_range=181043277,181043420;End_range=181043737,181043880;submitter_variant_call_id=BI_GS_DEL1_B4_P0182_9_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    181047424    181047424    1    181047424    181047424    140:mobile_element_insertion:0    .    .    .    ID=728433;Name=essv10206327;Alias=ALU_umary_ALU_630_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588078;submitter_variant_call_id=ALU_umary_ALU_630_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    181588359    181588359    1    181588359    181588359    141:mobile_element_insertion:0    .    .    .    ID=731840;Name=essv10207023;Alias=ALU_umary_ALU_632_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588087;submitter_variant_call_id=ALU_umary_ALU_632_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    181601285    181601285    1    181601285    181601285    142:mobile_element_insertion:0    .    .    .    ID=732218;Name=essv10207364;Alias=ALU_umary_ALU_633_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588088;submitter_variant_call_id=ALU_umary_ALU_633_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    182420856    182420856    1    182420856    182420856    143:mobile_element_insertion:0    .    .    .    ID=733973;Name=essv10208251;Alias=ALU_umary_ALU_639_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588103;submitter_variant_call_id=ALU_umary_ALU_639_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    183856340    183856340    1    183856340    183856340    144:indel:0    .    .    .    ID=736420;Name=essv10210273;Alias=PHASE3_V1_SV_98_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588118;submitter_variant_call_id=PHASE3_V1_SV_98_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    185009805    185009805    1    185011737    185011737    145:copy_number_loss:1932    .    .    .    ID=740881;Name=essv10211554;Alias=BI_GS_DEL1_B1_P0186_9_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588133;Start_range=185009806,185009806;End_range=185011738,185011738;submitter_variant_call_id=BI_GS_DEL1_B1_P0186_9_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    185504716    185504716    1    185504716    185504716    146:mobile_element_insertion:0    .    .    .    ID=741807;Name=essv10211948;Alias=ALU_umary_ALU_645_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588138;submitter_variant_call_id=ALU_umary_ALU_645_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    186743196    186743196    1    186743196    186743196    147:indel:0    .    .    .    ID=745025;Name=essv10214724;Alias=PHASE3_V1_SV_99_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588156;submitter_variant_call_id=PHASE3_V1_SV_99_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    187464746    187464746    1    187466828    187466828    148:copy_number_loss:2082    .    .    .    ID=751205;Name=essv10217266;Alias=YL_CN_PUR_321_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588165;Start_range=187463747,187465247;End_range=187466329,187467829;submitter_variant_call_id=YL_CN_PUR_321_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    187716052    187716052    1    187722513    187722513    149:copy_number_loss:6461    .    .    .    ID=755716;Name=essv10219023;Alias=BI_GS_DEL1_B5_P0188_771_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588176;Start_range=187716046,187716060;End_range=187722507,187722521;submitter_variant_call_id=BI_GS_DEL1_B5_P0188_771_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    188174656    188174656    1    188174656    188174656    150:mobile_element_insertion:0    .    .    .    ID=757206;Name=essv10219599;Alias=ALU_umary_ALU_659_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588186;submitter_variant_call_id=ALU_umary_ALU_659_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    188186463    188186463    1    188186463    188186463    151:mobile_element_insertion:0    .    .    .    ID=757590;Name=essv10220034;Alias=ALU_umary_ALU_660_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588187;submitter_variant_call_id=ALU_umary_ALU_660_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    188539456    188539456    1    188540227    188540227    152:copy_number_loss:771    .    .    .    ID=761948;Name=essv10222976;Alias=UW_VH_131_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588199;Start_range=188539005,188539457;End_range=188540228,188540726;submitter_variant_call_id=UW_VH_131_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    188832849    188832849    1    188832849    188832849    153:mobile_element_insertion:0    .    .    .    ID=767929;Name=essv10224988;Alias=ALU_umary_ALU_669_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588213;submitter_variant_call_id=ALU_umary_ALU_669_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    189247038    189247038    1    189247038    189247038    154:mobile_element_insertion:0    .    .    .    ID=769736;Name=essv10226479;Alias=ALU_umary_ALU_672_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588240;submitter_variant_call_id=ALU_umary_ALU_672_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    189661645    189661645    1    189661645    189661645    155:indel:0    .    .    .    ID=774590;Name=essv10228354;Alias=PHASE3_V1_SV_102_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588273;submitter_variant_call_id=PHASE3_V1_SV_102_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    189704476    189704476    1    189783355    189783355    156:copy_number_loss:78879    .    .    .    ID=775824;Name=essv10228691;Alias=BI_GS_DEL1_B4_P0190_157_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588274;Start_range=189704462,189704492;End_range=189783341,189783371;submitter_variant_call_id=BI_GS_DEL1_B4_P0190_157_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    189771445    189771445    1    189777753    189777753    157:copy_number_loss:6308    .    .    .    ID=775849;Name=essv10228717;Alias=BI_GS_DEL1_B2_P0190_483_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588275;Start_range=189771443,189771450;End_range=189777751,189777758;submitter_variant_call_id=BI_GS_DEL1_B2_P0190_483_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    190598029    190598029    1    190598029    190598029    158:indel:0    .    .    .    ID=778851;Name=essv10231383;Alias=PHASE3_V1_SV_103_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588305;submitter_variant_call_id=PHASE3_V1_SV_103_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    191580780    191580780    1    191580780    191580780    159:mobile_element_insertion:0    .    .    .    ID=787604;Name=essv10234978;Alias=ALU_umary_ALU_691_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588329;submitter_variant_call_id=ALU_umary_ALU_691_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    191817436    191817436    1    191817436    191817436    160:mobile_element_insertion:0    .    .    .    ID=789640;Name=essv10235801;Alias=ALU_umary_ALU_694_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588340;submitter_variant_call_id=ALU_umary_ALU_694_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    192262267    192262267    1    192262267    192262267    161:mobile_element_insertion:0    .    .    .    ID=793527;Name=essv10237790;Alias=L1_umary_LINE1_191_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588354;submitter_variant_call_id=L1_umary_LINE1_191_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    194451055    194451055    1    194454311    194454311    162:copy_number_loss:3256    .    .    .    ID=801747;Name=essv10242165;Alias=UW_VH_1353_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588393;Start_range=194450819,194451056;End_range=194454312,194454636;submitter_variant_call_id=UW_VH_1353_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    194517603    194517603    1    194517862    194517862    163:copy_number_loss:259    .    .    .    ID=805449;Name=essv10244038;Alias=BI_GS_DEL1_B2_P0195_316_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588396;Start_range=194517604,194517604;End_range=194517863,194517863;submitter_variant_call_id=BI_GS_DEL1_B2_P0195_316_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    194675139    194675139    1    194675139    194675139    164:mobile_element_insertion:0    .    .    .    ID=809066;Name=essv10245488;Alias=ALU_umary_ALU_708_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588403;submitter_variant_call_id=ALU_umary_ALU_708_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    195530259    195530259    1    195530259    195530259    165:mobile_element_insertion:0    .    .    .    ID=811567;Name=essv10246618;Alias=ALU_umary_ALU_713_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588447;submitter_variant_call_id=ALU_umary_ALU_713_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    197756783    197756783    1    197757981    197757981    166:inversion:1198    .    .    .    ID=827065;Name=essv10254266;Alias=INV_delly_INV00008143_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3588507;Start_range=197756723,197756845;End_range=197757921,197758043;submitter_variant_call_id=INV_delly_INV00008143_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    197894024    197894024    1    197894309    197894309    167:copy_number_loss:285    .    .    .    ID=828090;Name=essv10255813;Alias=BI_GS_DEL1_B5_P0198_990_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588508;Start_range=197894025,197894025;End_range=197894310,197894310;submitter_variant_call_id=BI_GS_DEL1_B5_P0198_990_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    198243299    198243299    1    198243299    198243299    168:mobile_element_insertion:0    .    .    .    ID=832568;Name=essv10257208;Alias=ALU_umary_ALU_726_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588518;submitter_variant_call_id=ALU_umary_ALU_726_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    198469337    198469337    1    198469337    198469337    169:mobile_element_insertion:0    .    .    .    ID=834991;Name=essv10258063;Alias=ALU_umary_ALU_729_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588528;submitter_variant_call_id=ALU_umary_ALU_729_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    198925741    198925741    1    198925741    198925741    170:indel:0    .    .    .    ID=840426;Name=essv10261608;Alias=PHASE3_V1_SV_105_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588539;submitter_variant_call_id=PHASE3_V1_SV_105_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    204238473    204238473    1    204238473    204238473    171:mobile_element_insertion:0    .    .    .    ID=853648;Name=essv10267852;Alias=ALU_umary_ALU_743_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588616;submitter_variant_call_id=ALU_umary_ALU_743_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    205178525    205178525    1    205178806    205178806    172:inversion:281    .    .    .    ID=859663;Name=essv10270759;Alias=INV_delly_INV00008409_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3588631;Start_range=205178342,205178710;End_range=205178623,205178991;submitter_variant_call_id=INV_delly_INV00008409_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    205853579    205853579    1    205853579    205853579    173:indel:0    .    .    .    ID=862053;Name=essv10273103;Alias=PHASE3_V1_SV_109_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588645;submitter_variant_call_id=PHASE3_V1_SV_109_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    207292374    207292374    1    207292594    207292594    174:copy_number_loss:220    .    .    .    ID=872912;Name=essv10275928;Alias=BI_GS_DEL1_B5_P0208_416_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588666;Start_range=207292367,207292383;End_range=207292587,207292603;submitter_variant_call_id=BI_GS_DEL1_B5_P0208_416_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    207292404    207292404    1    207293148    207293148    175:copy_number_loss:744    .    .    .    ID=875860;Name=essv10277936;Alias=BI_GS_DEL1_B1_P0208_321_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588667;Start_range=207292405,207292405;End_range=207293149,207293149;submitter_variant_call_id=BI_GS_DEL1_B1_P0208_321_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    207542026    207542026    1    207545524    207545524    176:copy_number_loss:3498    .    .    .    ID=879319;Name=essv10279760;Alias=DUP_gs_CNV_1_207542027_207545525_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588670;submitter_variant_call_id=DUP_gs_CNV_1_207542027_207545525_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    208691497    208691497    1    208691497    208691497    177:mobile_element_insertion:0    .    .    .    ID=881912;Name=essv10281074;Alias=ALU_umary_ALU_758_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588689;submitter_variant_call_id=ALU_umary_ALU_758_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    208862789    208862789    1    208862789    208862789    178:indel:0    .    .    .    ID=882222;Name=essv10281470;Alias=PHASE3_V1_SV_110_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588694;submitter_variant_call_id=PHASE3_V1_SV_110_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    211965008    211965008    1    211965781    211965781    179:copy_number_loss:773    .    .    .    ID=890329;Name=essv10285465;Alias=BI_GS_DEL1_B2_P0212_692_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588737;Start_range=211965009,211965010;End_range=211965782,211965783;submitter_variant_call_id=BI_GS_DEL1_B2_P0212_692_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    212471178    212471178    1    212472618    212472618    180:copy_number_loss:1440    .    .    .    ID=894337;Name=essv10287073;Alias=UW_VH_12590_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588749;Start_range=212470708,212471179;End_range=212472619,212473063;submitter_variant_call_id=UW_VH_12590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    213083965    213083965    1    213086596    213086596    181:copy_number_loss:2631    .    .    .    ID=900023;Name=essv10290312;Alias=YL_CN_PEL_289_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588760;Start_range=213082966,213084466;End_range=213086097,213087597;submitter_variant_call_id=YL_CN_PEL_289_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    221827820    221827820    1    221827820    221827820    182:mobile_element_insertion:0    .    .    .    ID=922252;Name=essv10300570;Alias=L1_umary_LINE1_226_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588931;submitter_variant_call_id=L1_umary_LINE1_226_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    221969170    221969170    1    221969170    221969170    183:mobile_element_insertion:0    .    .    .    ID=923458;Name=essv10301681;Alias=ALU_umary_ALU_821_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3588933;submitter_variant_call_id=ALU_umary_ALU_821_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    222374168    222374168    1    222380530    222380530    184:copy_number_loss:6362    .    .    .    ID=925380;Name=essv10302893;Alias=UW_VH_143_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3588936;Start_range=222373607,222374169;End_range=222380531,222380958;submitter_variant_call_id=UW_VH_143_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    224464647    224464647    1    224464647    224464647    185:indel:0    .    .    .    ID=934283;Name=essv10307139;Alias=PHASE3_V1_SV_120_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3588971;submitter_variant_call_id=PHASE3_V1_SV_120_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    229373394    229373394    1    229373770    229373770    186:copy_number_loss:376    .    .    .    ID=950100;Name=essv10314823;Alias=BI_GS_DEL1_B4_P0230_96_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589069;Start_range=229373395,229373395;End_range=229373771,229373771;submitter_variant_call_id=BI_GS_DEL1_B4_P0230_96_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    229812539    229812539    1    229820836    229820836    187:copy_number_loss:8297    .    .    .    ID=952738;Name=essv10316157;Alias=UW_VH_25144_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589078;Start_range=229812246,229812540;End_range=229820837,229821169;submitter_variant_call_id=UW_VH_25144_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    231085160    231085160    1    231085160    231085160    188:mobile_element_insertion:0    .    .    .    ID=957231;Name=essv10318386;Alias=ALU_umary_ALU_854_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589104;submitter_variant_call_id=ALU_umary_ALU_854_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    232587773    232587773    1    232587773    232587773    189:mobile_element_insertion:0    .    .    .    ID=963811;Name=essv10321588;Alias=ALU_umary_ALU_865_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589132;submitter_variant_call_id=ALU_umary_ALU_865_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    232869262    232869262    1    232869262    232869262    190:mobile_element_insertion:0    .    .    .    ID=967797;Name=essv10323517;Alias=ALU_umary_ALU_869_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589139;submitter_variant_call_id=ALU_umary_ALU_869_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    233962114    233962114    1    233963556    233963556    191:copy_number_loss:1442    .    .    .    ID=975558;Name=essv10327027;Alias=SI_BD_1242_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589155;Start_range=233961903,233962165;End_range=233963507,233963769;submitter_variant_call_id=SI_BD_1242_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    234070563    234070563    1    234070563    234070563    192:mobile_element_insertion:0    .    .    .    ID=977580;Name=essv10328476;Alias=ALU_umary_ALU_877_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589156;submitter_variant_call_id=ALU_umary_ALU_877_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    234318644    234318644    1    234319748    234319748    193:copy_number_loss:1104    .    .    .    ID=980269;Name=essv10329877;Alias=UW_VH_14400_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589165;Start_range=234318142,234318645;End_range=234319749,234320198;submitter_variant_call_id=UW_VH_14400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    235537076    235537076    1    235538344    235538344    194:copy_number_loss:1268    .    .    .    ID=985901;Name=essv10332730;Alias=UW_VH_154_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589194;Start_range=235536699,235537077;End_range=235538345,235538818;submitter_variant_call_id=UW_VH_154_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    236279277    236279277    1    236279831    236279831    195:copy_number_loss:554    .    .    .    ID=989278;Name=essv10333943;Alias=BI_GS_DEL1_B4_P0237_54_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589206;Start_range=236279278,236279278;End_range=236279832,236279832;submitter_variant_call_id=BI_GS_DEL1_B4_P0237_54_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    236538207    236538207    1    236538207    236538207    196:mobile_element_insertion:0    .    .    .    ID=994560;Name=essv10335472;Alias=SVA_umary_SVA_79_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589216;submitter_variant_call_id=SVA_umary_SVA_79_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    236548997    236548997    1    236551424    236551424    197:copy_number_loss:2427    .    .    .    ID=996511;Name=essv10337409;Alias=YL_CN_IBS_251_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589218;Start_range=236547998,236549498;End_range=236550925,236552425;submitter_variant_call_id=YL_CN_IBS_251_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    237569207    237569207    1    237569207    237569207    198:mobile_element_insertion:0    .    .    .    ID=1001142;Name=essv10339457;Alias=ALU_umary_ALU_889_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589235;submitter_variant_call_id=ALU_umary_ALU_889_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    237967626    237967626    1    237967626    237967626    199:mobile_element_insertion:0    .    .    .    ID=1005557;Name=essv10342442;Alias=ALU_umary_ALU_890_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589239;submitter_variant_call_id=ALU_umary_ALU_890_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    240302570    240302570    1    240302570    240302570    200:indel:0    .    .    .    ID=1017488;Name=essv10347320;Alias=PHASE3_V1_SV_130_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589303;submitter_variant_call_id=PHASE3_V1_SV_130_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    240641199    240641199    1    240641601    240641601    201:copy_number_loss:402    .    .    .    ID=1024187;Name=essv10350533;Alias=BI_GS_DEL1_B5_P0241_751_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589314;Start_range=240641200,240641201;End_range=240641602,240641603;submitter_variant_call_id=BI_GS_DEL1_B5_P0241_751_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    240675804    240675804    1    240675804    240675804    202:indel:0    .    .    .    ID=1026462;Name=essv10352452;Alias=PHASE3_V1_SV_131_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589315;submitter_variant_call_id=PHASE3_V1_SV_131_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    241586224    241586224    1    241586488    241586488    203:copy_number_loss:264    .    .    .    ID=1029821;Name=essv10354596;Alias=BI_GS_DEL1_B5_P0242_742_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589340;Start_range=241586225,241586225;End_range=241586489,241586489;submitter_variant_call_id=BI_GS_DEL1_B5_P0242_742_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    243127773    243127773    1    243129221    243129221    204:copy_number_loss:1448    .    .    .    ID=1036779;Name=essv10357958;Alias=BI_GS_DEL1_B2_P0244_78_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589384;Start_range=243127774,243127774;End_range=243129222,243129222;submitter_variant_call_id=BI_GS_DEL1_B2_P0244_78_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    243782746    243782746    1    243783758    243783758    205:copy_number_loss:1012    .    .    .    ID=1040201;Name=essv10359516;Alias=BI_GS_DEL1_B1_P0244_512_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589393;Start_range=243782747,243782747;End_range=243783759,243783759;submitter_variant_call_id=BI_GS_DEL1_B1_P0244_512_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    245989320    245989320    1    245989320    245989320    206:mobile_element_insertion:0    .    .    .    ID=1047883;Name=essv10362060;Alias=ALU_umary_ALU_930_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589450;submitter_variant_call_id=ALU_umary_ALU_930_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    246035672    246035672    1    246035672    246035672    207:indel:0    .    .    .    ID=1051602;Name=essv10364298;Alias=PHASE3_V1_SV_137_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589452;submitter_variant_call_id=PHASE3_V1_SV_137_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    246173274    246173274    1    246173274    246173274    208:indel:0    .    .    .    ID=1055275;Name=essv10366762;Alias=PHASE3_V1_SV_138_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589457;submitter_variant_call_id=PHASE3_V1_SV_138_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    246406701    246406701    1    246406701    246406701    209:mobile_element_insertion:0    .    .    .    ID=1058688;Name=essv10368504;Alias=ALU_umary_ALU_937_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589471;submitter_variant_call_id=ALU_umary_ALU_937_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    246565682    246565682    1    246565682    246565682    210:mobile_element_insertion:0    .    .    .    ID=1061090;Name=essv10369510;Alias=ALU_umary_ALU_939_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589476;submitter_variant_call_id=ALU_umary_ALU_939_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    246969897    246969897    1    246969897    246969897    211:indel:0    .    .    .    ID=1066855;Name=essv10372560;Alias=PHASE3_V1_SV_139_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589491;submitter_variant_call_id=PHASE3_V1_SV_139_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    247959050    247959050    1    247959050    247959050    212:indel:0    .    .    .    ID=1069553;Name=essv10374245;Alias=PHASE3_V1_SV_141_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589527;submitter_variant_call_id=PHASE3_V1_SV_141_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    248266342    248266342    1    248266342    248266342    213:indel:0    .    .    .    ID=1073486;Name=essv10376003;Alias=PHASE3_V1_SV_142_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589539;submitter_variant_call_id=PHASE3_V1_SV_142_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
1    248619875    248619875    1    248634578    248634578    214:copy_number_gain:14703    .    .    .    ID=1077047;Name=essv10377307;Alias=DUP_gs_CNV_1_248619876_248634579_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3589556;submitter_variant_call_id=DUP_gs_CNV_1_248619876_248634579_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    248755654    248755654    1    248758477    248758477    215:copy_number_loss:2823    .    .    .    ID=1080921;Name=essv10378067;Alias=BI_GS_DEL1_B1_P0249_462_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589558;Start_range=248755652,248755658;End_range=248758475,248758481;submitter_variant_call_id=BI_GS_DEL1_B1_P0249_462_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    248756740    248756740    1    248797596    248797596    216:copy_number_loss:40856    .    .    .    ID=1082069;Name=essv10378832;Alias=DUP_gs_CNV_1_248756741_248797597_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589559;submitter_variant_call_id=DUP_gs_CNV_1_248756741_248797597_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
1    248839442    248839442    1    248841017    248841017    217:copy_number_loss:1575    .    .    .    ID=1084702;Name=essv10381213;Alias=YL_CN_BEB_277_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589564;Start_range=248838443,248839943;End_range=248840518,248842018;submitter_variant_call_id=YL_CN_BEB_277_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    1146964    1146964    2    1146964    1146964    218:indel:0    .    .    .    ID=1089557;Name=essv10384827;Alias=PHASE3_V1_SV_144_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589615;submitter_variant_call_id=PHASE3_V1_SV_144_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    1471730    1471730    2    1471730    1471730    219:mobile_element_insertion:0    .    .    .    ID=1096495;Name=essv10387537;Alias=ALU_umary_ALU_964_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589630;submitter_variant_call_id=ALU_umary_ALU_964_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    2539949    2539949    2    2539949    2539949    220:mobile_element_insertion:0    .    .    .    ID=1111270;Name=essv10394883;Alias=ALU_umary_ALU_965_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589648;submitter_variant_call_id=ALU_umary_ALU_965_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    2798773    2798773    2    2799245    2799245    221:copy_number_loss:472    .    .    .    ID=1113949;Name=essv10396442;Alias=BI_GS_DEL1_B5_P0253_926_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589650;Start_range=2798774,2798774;End_range=2799246,2799246;submitter_variant_call_id=BI_GS_DEL1_B5_P0253_926_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    3732801    3732801    2    3738023    3738023    222:copy_number_loss:5222    .    .    .    ID=1120218;Name=essv10399463;Alias=BI_GS_DEL1_B4_P0254_152_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589665;Start_range=3732802,3732803;End_range=3738024,3738025;submitter_variant_call_id=BI_GS_DEL1_B4_P0254_152_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    4212109    4212109    2    4223632    4223632    223:copy_number_loss:11523    .    .    .    ID=1121226;Name=essv10399880;Alias=YL_CN_GBR_340_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589676;Start_range=4211110,4212610;End_range=4223133,4224633;submitter_variant_call_id=YL_CN_GBR_340_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    9888817    9888817    2    9888817    9888817    224:mobile_element_insertion:0    .    .    .    ID=1133961;Name=essv10405629;Alias=ALU_umary_ALU_997_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589782;submitter_variant_call_id=ALU_umary_ALU_997_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    11353710    11353710    2    11353710    11353710    225:mobile_element_insertion:0    .    .    .    ID=1139900;Name=essv10408023;Alias=ALU_umary_ALU_1002_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589813;submitter_variant_call_id=ALU_umary_ALU_1002_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    11426374    11426374    2    11426374    11426374    226:mobile_element_insertion:0    .    .    .    ID=1141777;Name=essv10409837;Alias=ALU_umary_ALU_1003_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589815;submitter_variant_call_id=ALU_umary_ALU_1003_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    12607549    12607549    2    12607549    12607549    227:indel:0    .    .    .    ID=1144367;Name=essv10411575;Alias=PHASE3_V1_SV_157_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3589831;submitter_variant_call_id=PHASE3_V1_SV_157_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    14704164    14704164    2    14710159    14710159    228:copy_number_loss:5995    .    .    .    ID=1151531;Name=essv10414858;Alias=UW_VH_2007_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589892;Start_range=14703817,14704165;End_range=14710160,14710440;submitter_variant_call_id=UW_VH_2007_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    14706435    14706435    2    14709954    14709954    229:copy_number_loss:3519    .    .    .    ID=1151573;Name=essv10414957;Alias=BI_GS_DEL1_B5_P0265_799_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589893;Start_range=14706433,14706440;End_range=14709952,14709959;submitter_variant_call_id=BI_GS_DEL1_B5_P0265_799_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    15163765    15163765    2    15163765    15163765    230:mobile_element_insertion:0    .    .    .    ID=1153508;Name=essv10415806;Alias=ALU_umary_ALU_1018_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589905;submitter_variant_call_id=ALU_umary_ALU_1018_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    15519552    15519552    2    15519552    15519552    231:mobile_element_insertion:0    .    .    .    ID=1156737;Name=essv10417317;Alias=ALU_umary_ALU_1019_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3589911;submitter_variant_call_id=ALU_umary_ALU_1019_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    16271566    16271566    2    16273798    16273798    232:copy_number_loss:2232    .    .    .    ID=1159826;Name=essv10419228;Alias=EM_DL_DEL50186_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589923;Start_range=16271417,16271717;End_range=16273649,16273949;submitter_variant_call_id=EM_DL_DEL50186_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    18906157    18906157    2    18907340    18907340    233:copy_number_loss:1183    .    .    .    ID=1167196;Name=essv10422168;Alias=UW_VH_3734_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3589970;Start_range=18905809,18906158;End_range=18907341,18907582;submitter_variant_call_id=UW_VH_3734_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    21381179    21381179    2    21381179    21381179    234:mobile_element_insertion:0    .    .    .    ID=1175873;Name=essv10426660;Alias=ALU_umary_ALU_1048_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590007;submitter_variant_call_id=ALU_umary_ALU_1048_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    21796826    21796826    2    21796826    21796826    235:mobile_element_insertion:0    .    .    .    ID=1180919;Name=essv10429109;Alias=ALU_umary_ALU_1054_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590019;submitter_variant_call_id=ALU_umary_ALU_1054_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    22688398    22688398    2    22690106    22690106    236:copy_number_loss:1708    .    .    .    ID=1182576;Name=essv10430140;Alias=YL_CN_STU_345_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590042;Start_range=22687399,22688899;End_range=22689607,22691107;submitter_variant_call_id=YL_CN_STU_345_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    22706338    22706338    2    22706338    22706338    237:mobile_element_insertion:0    .    .    .    ID=1182953;Name=essv10430389;Alias=L1_umary_LINE1_266_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590043;submitter_variant_call_id=L1_umary_LINE1_266_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    23191015    23191015    2    23191015    23191015    238:mobile_element_insertion:0    .    .    .    ID=1185749;Name=essv10432016;Alias=L1_umary_LINE1_267_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590052;submitter_variant_call_id=L1_umary_LINE1_267_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    26473945    26473945    2    26473945    26473945    239:mobile_element_insertion:0    .    .    .    ID=1190465;Name=essv10433660;Alias=ALU_umary_ALU_1070_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590114;submitter_variant_call_id=ALU_umary_ALU_1070_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    28661665    28661665    2    28661665    28661665    240:indel:0    .    .    .    ID=1198644;Name=essv10438051;Alias=PHASE3_V1_SV_171_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590160;submitter_variant_call_id=PHASE3_V1_SV_171_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    29999224    29999224    2    29999224    29999224    241:indel:0    .    .    .    ID=1203175;Name=essv10440549;Alias=PHASE3_V1_SV_172_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590190;submitter_variant_call_id=PHASE3_V1_SV_172_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    31559695    31559695    2    31559695    31559695    242:mobile_element_insertion:0    .    .    .    ID=1211592;Name=essv10444288;Alias=ALU_umary_ALU_1092_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590218;submitter_variant_call_id=ALU_umary_ALU_1092_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    31952209    31952209    2    31952209    31952209    243:mobile_element_insertion:0    .    .    .    ID=1216570;Name=essv10446830;Alias=ALU_umary_ALU_1094_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590229;submitter_variant_call_id=ALU_umary_ALU_1094_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    33224461    33224461    2    33227295    33227295    244:copy_number_loss:2834    .    .    .    ID=1223592;Name=essv10450151;Alias=BI_GS_DEL1_B1_P0284_218_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590271;Start_range=33224462,33224462;End_range=33227296,33227296;submitter_variant_call_id=BI_GS_DEL1_B1_P0284_218_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    33892477    33892477    2    33892490    33892490    245:insertion:13    .    .    .    ID=1226727;Name=essv10451914;Alias=NUMT_umich_73_A1_NA12878;variant_call_so_id=SO:0000667;parent=esv3590297;Start_range=33892478,33892492;End_range=33892477,33892491;submitter_variant_call_id=NUMT_umich_73_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    34200335    34200335    2    34200335    34200335    246:indel:0    .    .    .    ID=1232616;Name=essv10453927;Alias=PHASE3_V1_SV_176_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590308;submitter_variant_call_id=PHASE3_V1_SV_176_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    34255391    34255391    2    34255391    34255391    247:mobile_element_insertion:0    .    .    .    ID=1233865;Name=essv10455527;Alias=ALU_umary_ALU_1117_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590311;submitter_variant_call_id=ALU_umary_ALU_1117_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    34523575    34523575    2    34525668    34525668    248:copy_number_loss:2093    .    .    .    ID=1239184;Name=essv10457631;Alias=SI_BD_1647_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590324;Start_range=34523234,34523707;End_range=34525583,34526011;submitter_variant_call_id=SI_BD_1647_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    34695855    34695855    2    34736533    34736533    249:copy_number_loss:40678    .    .    .    ID=1240558;Name=essv10458828;Alias=DUP_gs_CNV_2_34695856_34736534_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590334;submitter_variant_call_id=DUP_gs_CNV_2_34695856_34736534_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    35879353    35879353    2    35879353    35879353    250:mobile_element_insertion:0    .    .    .    ID=1244521;Name=essv10460009;Alias=L1_umary_LINE1_286_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590371;submitter_variant_call_id=L1_umary_LINE1_286_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    35975765    35975765    2    35997214    35997214    251:copy_number_loss:21449    .    .    .    ID=1246411;Name=essv10461484;Alias=YL_CN_CLM_306_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590373;Start_range=35974766,35976266;End_range=35996715,35998215;submitter_variant_call_id=YL_CN_CLM_306_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    38040911    38040911    2    38040911    38040911    252:indel:0    .    .    .    ID=1257878;Name=essv10467553;Alias=PHASE3_V1_SV_179_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590408;submitter_variant_call_id=PHASE3_V1_SV_179_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    39315338    39315338    2    39315338    39315338    253:mobile_element_insertion:0    .    .    .    ID=1262759;Name=essv10470071;Alias=ALU_umary_ALU_1136_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590424;submitter_variant_call_id=ALU_umary_ALU_1136_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    40613687    40613687    2    40613687    40613687    254:mobile_element_insertion:0    .    .    .    ID=1266406;Name=essv10471837;Alias=ALU_umary_ALU_1143_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590459;submitter_variant_call_id=ALU_umary_ALU_1143_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    40882495    40882495    2    40882495    40882495    255:indel:0    .    .    .    ID=1268923;Name=essv10473042;Alias=PHASE3_V1_SV_182_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590467;submitter_variant_call_id=PHASE3_V1_SV_182_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    41973026    41973026    2    41976040    41976040    256:copy_number_loss:3014    .    .    .    ID=1277032;Name=essv10476957;Alias=YL_CN_BEB_318_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590485;Start_range=41972027,41973527;End_range=41975541,41977041;submitter_variant_call_id=YL_CN_BEB_318_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    42346264    42346264    2    42347319    42347319    257:copy_number_loss:1055    .    .    .    ID=1281728;Name=essv10479203;Alias=BI_GS_DEL1_B5_P0293_450_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590498;Start_range=42346265,42346265;End_range=42347320,42347320;submitter_variant_call_id=BI_GS_DEL1_B5_P0293_450_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    43024075    43024075    2    43024075    43024075    258:mobile_element_insertion:0    .    .    .    ID=1285759;Name=essv10481090;Alias=ALU_umary_ALU_1149_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590511;submitter_variant_call_id=ALU_umary_ALU_1149_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    44825849    44825849    2    44825849    44825849    259:mobile_element_insertion:0    .    .    .    ID=1293092;Name=essv10484967;Alias=ALU_umary_ALU_1163_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590566;submitter_variant_call_id=ALU_umary_ALU_1163_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    46928952    46928952    2    46928952    46928952    260:mobile_element_insertion:0    .    .    .    ID=1302061;Name=essv10489027;Alias=ALU_umary_ALU_1171_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590614;submitter_variant_call_id=ALU_umary_ALU_1171_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    48990525    48990525    2    48991165    48991165    261:copy_number_loss:640    .    .    .    ID=1313664;Name=essv10494547;Alias=BI_GS_DEL1_B5_P0299_1144_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590660;Start_range=48990526,48990526;End_range=48991166,48991166;submitter_variant_call_id=BI_GS_DEL1_B5_P0299_1144_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    49061403    49061403    2    49061403    49061403    262:indel:0    .    .    .    ID=1314740;Name=essv10495753;Alias=PHASE3_V1_SV_190_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3590666;submitter_variant_call_id=PHASE3_V1_SV_190_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    49733499    49733499    2    49733499    49733499    263:mobile_element_insertion:0    .    .    .    ID=1320189;Name=essv10498055;Alias=ALU_umary_ALU_1184_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590699;submitter_variant_call_id=ALU_umary_ALU_1184_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    50602643    50602643    2    50602643    50602643    264:mobile_element_insertion:0    .    .    .    ID=1324740;Name=essv10500279;Alias=ALU_umary_ALU_1192_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590726;submitter_variant_call_id=ALU_umary_ALU_1192_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    51469238    51469238    2    51469238    51469238    265:mobile_element_insertion:0    .    .    .    ID=1329544;Name=essv10502521;Alias=ALU_umary_ALU_1198_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590754;submitter_variant_call_id=ALU_umary_ALU_1198_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    51926594    51926594    2    51927816    51927816    266:copy_number_loss:1222    .    .    .    ID=1332267;Name=essv10503875;Alias=UW_VH_182_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590770;Start_range=51926048,51926595;End_range=51927817,51928243;submitter_variant_call_id=UW_VH_182_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    51973821    51973821    2    51974237    51974237    267:copy_number_loss:416    .    .    .    ID=1332849;Name=essv10504716;Alias=UW_VH_2349_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590772;Start_range=51973311,51973822;End_range=51974238,51974679;submitter_variant_call_id=UW_VH_2349_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    52749686    52749686    2    52785268    52785268    268:copy_number_loss:35582    .    .    .    ID=1335767;Name=essv10506130;Alias=BI_GS_DEL1_B1_P0303_584_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590788;Start_range=52749687,52749687;End_range=52785269,52785269;submitter_variant_call_id=BI_GS_DEL1_B1_P0303_584_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    53460064    53460064    2    53460064    53460064    269:mobile_element_insertion:0    .    .    .    ID=1338481;Name=essv10507204;Alias=L1_umary_LINE1_309_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3590818;submitter_variant_call_id=L1_umary_LINE1_309_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    54565489    54565489    2    54567477    54567477    270:copy_number_loss:1988    .    .    .    ID=1344231;Name=essv10509462;Alias=UW_VH_25165_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590837;Start_range=54565189,54565490;End_range=54567478,54567845;submitter_variant_call_id=UW_VH_25165_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    59623255    59623255    2    59631070    59631070    271:copy_number_loss:7815    .    .    .    ID=1360971;Name=essv10518366;Alias=BI_GS_DEL1_B2_P0310_486_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3590983;Start_range=59623256,59623257;End_range=59631071,59631072;submitter_variant_call_id=BI_GS_DEL1_B2_P0310_486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    63779235    63779235    2    63779235    63779235    272:mobile_element_insertion:0    .    .    .    ID=1371707;Name=essv10523660;Alias=ALU_umary_ALU_1248_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591060;submitter_variant_call_id=ALU_umary_ALU_1248_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    65163782    65163782    2    65163782    65163782    273:mobile_element_insertion:0    .    .    .    ID=1379071;Name=essv10526869;Alias=ALU_umary_ALU_1256_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591087;submitter_variant_call_id=ALU_umary_ALU_1256_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    65333802    65333802    2    65333802    65333802    274:mobile_element_insertion:0    .    .    .    ID=1380656;Name=essv10528135;Alias=ALU_umary_ALU_1258_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591095;submitter_variant_call_id=ALU_umary_ALU_1258_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    66505567    66505567    2    66507542    66507542    275:copy_number_loss:1975    .    .    .    ID=1386378;Name=essv10530352;Alias=BI_GS_DEL1_B1_P0317_504_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591113;Start_range=66505567,66505569;End_range=66507542,66507544;submitter_variant_call_id=BI_GS_DEL1_B1_P0317_504_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    66658990    66658990    2    66658990    66658990    276:mobile_element_insertion:0    .    .    .    ID=1387547;Name=essv10531876;Alias=ALU_umary_ALU_1261_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591119;submitter_variant_call_id=ALU_umary_ALU_1261_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    70125032    70125032    2    70125560    70125560    277:copy_number_loss:528    .    .    .    ID=1396273;Name=essv10536038;Alias=BI_GS_DEL1_B3_P0321_5_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591194;Start_range=70125033,70125034;End_range=70125561,70125562;submitter_variant_call_id=BI_GS_DEL1_B3_P0321_5_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    71706302    71706302    2    71706302    71706302    278:mobile_element_insertion:0    .    .    .    ID=1401901;Name=essv10538918;Alias=ALU_umary_ALU_1289_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591231;submitter_variant_call_id=ALU_umary_ALU_1289_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    75387902    75387902    2    75387902    75387902    279:mobile_element_insertion:0    .    .    .    ID=1412834;Name=essv10543895;Alias=ALU_umary_ALU_1307_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591294;submitter_variant_call_id=ALU_umary_ALU_1307_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    76557060    76557060    2    76557291    76557291    280:copy_number_loss:231    .    .    .    ID=1420486;Name=essv10546913;Alias=UW_VH_1365_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591320;Start_range=76556522,76557061;End_range=76557292,76557791;submitter_variant_call_id=UW_VH_1365_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    76773558    76773558    2    76775449    76775449    281:copy_number_loss:1891    .    .    .    ID=1422798;Name=essv10549122;Alias=UW_VH_11713_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591324;Start_range=76773172,76773559;End_range=76775450,76775857;submitter_variant_call_id=UW_VH_11713_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    78117885    78117885    2    78118361    78118361    282:copy_number_loss:476    .    .    .    ID=1431722;Name=essv10553488;Alias=BI_GS_DEL1_B3_P0329_7_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591362;Start_range=78117886,78117886;End_range=78118362,78118362;submitter_variant_call_id=BI_GS_DEL1_B3_P0329_7_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    78965425    78965425    2    78965425    78965425    283:mobile_element_insertion:0    .    .    .    ID=1436639;Name=essv10555392;Alias=ALU_umary_ALU_1327_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591394;submitter_variant_call_id=ALU_umary_ALU_1327_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    79076572    79076572    2    79081207    79081207    284:copy_number_loss:4635    .    .    .    ID=1438251;Name=essv10556796;Alias=BI_GS_DEL1_B4_P0330_23_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591397;Start_range=79076573,79076573;End_range=79081208,79081208;submitter_variant_call_id=BI_GS_DEL1_B4_P0330_23_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    80769023    80769023    2    80769023    80769023    285:mobile_element_insertion:0    .    .    .    ID=1442217;Name=essv10558763;Alias=ALU_umary_ALU_1331_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591425;submitter_variant_call_id=ALU_umary_ALU_1331_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    82098042    82098042    2    82098042    82098042    286:mobile_element_insertion:0    .    .    .    ID=1446902;Name=essv10561191;Alias=L1_umary_LINE1_346_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591454;submitter_variant_call_id=L1_umary_LINE1_346_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    84728754    84728754    2    84728754    84728754    287:mobile_element_insertion:0    .    .    .    ID=1459837;Name=essv10567360;Alias=ALU_umary_ALU_1354_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591515;submitter_variant_call_id=ALU_umary_ALU_1354_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    86972695    86972695    2    87178266    87178266    288:copy_number_gain:205571    .    .    .    ID=1466255;Name=essv10570761;Alias=DUP_uwash_chr2_86972696_87178267_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591557;submitter_variant_call_id=DUP_uwash_chr2_86972696_87178267_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    87407706    87407706    2    87407706    87407706    289:mobile_element_insertion:0    .    .    .    ID=1470457;Name=essv10572310;Alias=L1_umary_LINE1_353_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591561;submitter_variant_call_id=L1_umary_LINE1_353_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    89132269    89132269    2    89155859    89155859    290:copy_number_loss:23590    .    .    .    ID=1475650;Name=essv10575212;Alias=UW_VH_20227_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591600;Start_range=89132214,89132270;End_range=89155860,89155928;submitter_variant_call_id=UW_VH_20227_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    89876398    89876398    2    89910323    89910323    291:copy_number_gain:33925    .    .    .    ID=1481296;Name=essv10578030;Alias=DUP_gs_CNV_2_89876399_89910324_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591607;submitter_variant_call_id=DUP_gs_CNV_2_89876399_89910324_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    91865749    91865749    2    91925128    91925128    292:copy_number_gain:59379    .    .    .    ID=1496821;Name=essv10585491;Alias=DUP_gs_CNV_2_91865750_91925129_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591633;submitter_variant_call_id=DUP_gs_CNV_2_91865750_91925129_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    97854286    97854286    2    97856137    97856137    293:copy_number_loss:1851    .    .    .    ID=1508231;Name=essv10590875;Alias=UW_VH_3901_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591707;Start_range=97853989,97854287;End_range=97856138,97856632;submitter_variant_call_id=UW_VH_3901_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    98136215    98136215    2    98156566    98156566    294:copy_number_loss:20351    .    .    .    ID=1511376;Name=essv10592255;Alias=DUP_gs_CNV_2_98136216_98156567_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591709;submitter_variant_call_id=DUP_gs_CNV_2_98136216_98156567_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    100437235    100437235    2    100437235    100437235    295:mobile_element_insertion:0    .    .    .    ID=1518574;Name=essv10596558;Alias=ALU_umary_ALU_1388_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591741;submitter_variant_call_id=ALU_umary_ALU_1388_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    102232537    102232537    2    102233563    102233563    296:copy_number_loss:1026    .    .    .    ID=1520876;Name=essv10597688;Alias=BI_GS_DEL1_B2_P0353_161_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591773;Start_range=102232533,102232544;End_range=102233559,102233570;submitter_variant_call_id=BI_GS_DEL1_B2_P0353_161_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    106585626    106585626    2    106585626    106585626    297:mobile_element_insertion:0    .    .    .    ID=1534547;Name=essv10601061;Alias=ALU_umary_ALU_1407_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3591848;submitter_variant_call_id=ALU_umary_ALU_1407_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    106694798    106694798    2    106696034    106696034    298:copy_number_loss:1236    .    .    .    ID=1536638;Name=essv10602610;Alias=YL_CN_YRI_643_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591851;Start_range=106693799,106695299;End_range=106695535,106697035;submitter_variant_call_id=YL_CN_YRI_643_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    106695054    106695054    2    106695892    106695892    299:copy_number_loss:838    .    .    .    ID=1537470;Name=essv10604359;Alias=BI_GS_DEL1_B5_P0357_929_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591852;Start_range=106695055,106695056;End_range=106695893,106695894;submitter_variant_call_id=BI_GS_DEL1_B5_P0357_929_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    106695491    106695491    2    106695751    106695751    300:copy_number_loss:260    .    .    .    ID=1540156;Name=essv10606106;Alias=BI_GS_DEL1_B2_P0357_583_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591853;Start_range=106695471,106695514;End_range=106695731,106695774;submitter_variant_call_id=BI_GS_DEL1_B2_P0357_583_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    108855422    108855422    2    108856273    108856273    301:copy_number_loss:851    .    .    .    ID=1548167;Name=essv10610711;Alias=BI_GS_DEL1_B1_P0359_685_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591922;Start_range=108855423,108855423;End_range=108856274,108856274;submitter_variant_call_id=BI_GS_DEL1_B1_P0359_685_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    109310555    109310555    2    109312111    109312111    302:copy_number_loss:1556    .    .    .    ID=1549769;Name=essv10611916;Alias=BI_GS_DEL1_B5_P0360_299_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591931;Start_range=109310556,109310556;End_range=109312112,109312112;submitter_variant_call_id=BI_GS_DEL1_B5_P0360_299_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    109689980    109689980    2    109695336    109695336    303:copy_number_loss:5356    .    .    .    ID=1553251;Name=essv10612419;Alias=SI_BD_2086_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591938;Start_range=109689775,109690031;End_range=109695155,109695543;submitter_variant_call_id=SI_BD_2086_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    110441456    110441456    2    110547944    110547944    304:copy_number_gain:106488    .    .    .    ID=1558007;Name=essv10614393;Alias=DUP_uwash_chr2_110441457_110547945_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591947;submitter_variant_call_id=DUP_uwash_chr2_110441457_110547945_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    111152884    111152884    2    111606196    111606196    305:copy_number_gain:453312    .    .    .    ID=1561933;Name=essv10617063;Alias=DUP_uwash_chr2_111152885_111606197_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3591962;submitter_variant_call_id=DUP_uwash_chr2_111152885_111606197_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    111576390    111576390    2    111576632    111576632    306:copy_number_loss:242    .    .    .    ID=1569650;Name=essv10618789;Alias=BI_GS_DEL1_B5_P0362_229_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3591972;Start_range=111576390,111576392;End_range=111576632,111576634;submitter_variant_call_id=BI_GS_DEL1_B5_P0362_229_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    112018094    112018094    2    112176367    112176367    307:copy_number_gain:158273    .    .    .    ID=1575061;Name=essv10621782;Alias=DUP_uwash_chr2_112018095_112176368_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591980;submitter_variant_call_id=DUP_uwash_chr2_112018095_112176368_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    112283448    112283448    2    112414627    112414627    308:copy_number_gain:131179    .    .    .    ID=1579601;Name=essv10624920;Alias=DUP_uwash_chr2_112283448_112414628_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3591990;submitter_variant_call_id=DUP_uwash_chr2_112283448_112414628_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    114106445    114106445    2    114106445    114106445    309:mobile_element_insertion:0    .    .    .    ID=1587615;Name=essv10629577;Alias=ALU_umary_ALU_1441_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592017;submitter_variant_call_id=ALU_umary_ALU_1441_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    114151312    114151312    2    114153613    114153613    310:copy_number_loss:2301    .    .    .    ID=1590028;Name=essv10631461;Alias=SI_BD_2100_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592020;Start_range=114151017,114151363;End_range=114153564,114153910;submitter_variant_call_id=SI_BD_2100_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    116662057    116662057    2    116662651    116662651    311:copy_number_loss:594    .    .    .    ID=1598898;Name=essv10636006;Alias=BI_GS_DEL1_B4_P0367_141_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592077;Start_range=116662057,116662059;End_range=116662651,116662653;submitter_variant_call_id=BI_GS_DEL1_B4_P0367_141_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    118799997    118799997    2    118799997    118799997    312:indel:0    .    .    .    ID=1603755;Name=essv10638401;Alias=PHASE3_V1_SV_230_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592148;submitter_variant_call_id=PHASE3_V1_SV_230_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    119155728    119155728    2    119155728    119155728    313:mobile_element_insertion:0    .    .    .    ID=1605998;Name=essv10639206;Alias=ALU_umary_ALU_1469_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592153;submitter_variant_call_id=ALU_umary_ALU_1469_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    121797801    121797801    2    121798396    121798396    314:copy_number_loss:595    .    .    .    ID=1612981;Name=essv10642479;Alias=BI_GS_DEL1_B2_P0372_743_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592195;Start_range=121797802,121797802;End_range=121798397,121798397;submitter_variant_call_id=BI_GS_DEL1_B2_P0372_743_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    122085246    122085246    2    122085246    122085246    315:mobile_element_insertion:0    .    .    .    ID=1616358;Name=essv10644125;Alias=ALU_umary_ALU_1478_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592203;submitter_variant_call_id=ALU_umary_ALU_1478_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    122902298    122902298    2    122902298    122902298    316:indel:0    .    .    .    ID=1625462;Name=essv10647434;Alias=PHASE3_V1_SV_233_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592227;submitter_variant_call_id=PHASE3_V1_SV_233_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    123330660    123330660    2    123330660    123330660    317:mobile_element_insertion:0    .    .    .    ID=1629642;Name=essv10649387;Alias=ALU_umary_ALU_1484_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592235;submitter_variant_call_id=ALU_umary_ALU_1484_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    123364884    123364884    2    123365366    123365366    318:copy_number_loss:482    .    .    .    ID=1630335;Name=essv10651038;Alias=UW_VH_202_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592236;Start_range=123364337,123364885;End_range=123365367,123365850;submitter_variant_call_id=UW_VH_202_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    123477288    123477288    2    123482544    123482544    319:copy_number_loss:5256    .    .    .    ID=1631738;Name=essv10652011;Alias=BI_GS_CNV_2_123477289_123482545_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592238;Start_range=123476789,123477289;End_range=123482545,123483045;submitter_variant_call_id=BI_GS_CNV_2_123477289_123482545_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    125428159    125428159    2    125428159    125428159    320:indel:0    .    .    .    ID=1638838;Name=essv10655286;Alias=PHASE3_V1_SV_237_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592282;submitter_variant_call_id=PHASE3_V1_SV_237_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    126443246    126443246    2    126451830    126451830    321:copy_number_loss:8584    .    .    .    ID=1646153;Name=essv10659858;Alias=EM_DL_DEL54293_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592317;Start_range=126443097,126443397;End_range=126451681,126451981;submitter_variant_call_id=EM_DL_DEL54293_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    126641641    126641641    2    126641641    126641641    322:mobile_element_insertion:0    .    .    .    ID=1648262;Name=essv10660731;Alias=ALU_umary_ALU_1502_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592323;submitter_variant_call_id=ALU_umary_ALU_1502_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    127674756    127674756    2    127677269    127677269    323:copy_number_loss:2513    .    .    .    ID=1653108;Name=essv10662579;Alias=UW_VH_5962_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592348;Start_range=127674323,127674757;End_range=127677270,127677730;submitter_variant_call_id=UW_VH_5962_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    128638903    128638903    2    128638903    128638903    324:mobile_element_insertion:0    .    .    .    ID=1655779;Name=essv10664516;Alias=ALU_umary_ALU_1516_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592369;submitter_variant_call_id=ALU_umary_ALU_1516_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    129638387    129638387    2    129646199    129646199    325:copy_number_loss:7812    .    .    .    ID=1662364;Name=essv10666542;Alias=SI_BD_2208_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592405;Start_range=129638090,129638614;End_range=129646135,129646498;submitter_variant_call_id=SI_BD_2208_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    129697613    129697613    2    129697613    129697613    326:indel:0    .    .    .    ID=1663222;Name=essv10668394;Alias=PHASE3_V1_SV_241_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592408;submitter_variant_call_id=PHASE3_V1_SV_241_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    130242118    130242118    2    130251574    130251574    327:copy_number_loss:9456    .    .    .    ID=1668788;Name=essv10669224;Alias=YL_CN_CEU_664_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592422;Start_range=130241119,130242619;End_range=130251075,130252575;submitter_variant_call_id=YL_CN_CEU_664_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    130243467    130243467    2    130249516    130249516    328:copy_number_loss:6049    .    .    .    ID=1668860;Name=essv10669299;Alias=UW_VH_8275_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592423;Start_range=130243084,130243468;End_range=130249517,130249852;submitter_variant_call_id=UW_VH_8275_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    130954938    130954938    2    130957400    130957400    329:copy_number_loss:2462    .    .    .    ID=1671248;Name=essv10671384;Alias=UW_VH_1370_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592442;Start_range=130954338,130954939;End_range=130957401,130957867;submitter_variant_call_id=UW_VH_1370_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    130968488    130968488    2    130968488    130968488    330:mobile_element_insertion:0    .    .    .    ID=1672813;Name=essv10672557;Alias=SVA_umary_SVA_127_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592444;submitter_variant_call_id=SVA_umary_SVA_127_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    132534283    132534283    2    132534837    132534837    331:copy_number_loss:554    .    .    .    ID=1683231;Name=essv10676340;Alias=SI_BD_2243_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592495;Start_range=132534123,132534334;End_range=132534788,132534999;submitter_variant_call_id=SI_BD_2243_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    132534496    132534496    2    132534922    132534922    332:copy_number_loss:426    .    .    .    ID=1684299;Name=essv10678394;Alias=UW_VH_207_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592496;Start_range=132533998,132534497;End_range=132534923,132535353;submitter_variant_call_id=UW_VH_207_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    133671911    133671911    2    133674535    133674535    333:copy_number_loss:2624    .    .    .    ID=1687728;Name=essv10679970;Alias=UW_VH_3869_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592517;Start_range=133671564,133671912;End_range=133674536,133674716;submitter_variant_call_id=UW_VH_3869_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    134650573    134650573    2    134650573    134650573    334:indel:0    .    .    .    ID=1691809;Name=essv10681933;Alias=PHASE3_V1_SV_245_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592546;submitter_variant_call_id=PHASE3_V1_SV_245_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    138259797    138259797    2    138259797    138259797    335:mobile_element_insertion:0    .    .    .    ID=1702001;Name=essv10686905;Alias=ALU_umary_ALU_1557_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592628;submitter_variant_call_id=ALU_umary_ALU_1557_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    138490122    138490122    2    138490495    138490495    336:copy_number_loss:373    .    .    .    ID=1703515;Name=essv10687910;Alias=BI_GS_DEL1_B2_P0389_354_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592634;Start_range=138490123,138490123;End_range=138490496,138490496;submitter_variant_call_id=BI_GS_DEL1_B2_P0389_354_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    141534073    141534073    2    141534073    141534073    337:mobile_element_insertion:0    .    .    .    ID=1711545;Name=essv10691332;Alias=ALU_umary_ALU_1585_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592694;submitter_variant_call_id=ALU_umary_ALU_1585_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    145346766    145346766    2    145346766    145346766    338:mobile_element_insertion:0    .    .    .    ID=1723158;Name=essv10696876;Alias=ALU_umary_ALU_1610_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592774;submitter_variant_call_id=ALU_umary_ALU_1610_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    145953807    145953807    2    145953807    145953807    339:indel:0    .    .    .    ID=1725608;Name=essv10699139;Alias=PHASE3_V1_SV_253_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3592786;submitter_variant_call_id=PHASE3_V1_SV_253_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    146862621    146862621    2    146876865    146876865    340:copy_number_loss:14244    .    .    .    ID=1733430;Name=essv10701160;Alias=BI_GS_DEL1_B1_P0397_730_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592798;Start_range=146862622,146862622;End_range=146876866,146876866;submitter_variant_call_id=BI_GS_DEL1_B1_P0397_730_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    146868294    146868294    2    146876317    146876317    341:copy_number_loss:8023    .    .    .    ID=1735233;Name=essv10702548;Alias=UW_VH_12564_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592799;Start_range=146868221,146868295;End_range=146876318,146876405;submitter_variant_call_id=UW_VH_12564_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    147020932    147020932    2    147020932    147020932    342:mobile_element_insertion:0    .    .    .    ID=1736392;Name=essv10704576;Alias=L1_umary_LINE1_411_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592802;submitter_variant_call_id=L1_umary_LINE1_411_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    151031126    151031126    2    151038284    151038284    343:copy_number_loss:7158    .    .    .    ID=1748631;Name=essv10710214;Alias=UW_VH_1707_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592885;Start_range=151030796,151031127;End_range=151038285,151038633;submitter_variant_call_id=UW_VH_1707_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    153248279    153248279    2    153248279    153248279    344:mobile_element_insertion:0    .    .    .    ID=1753835;Name=essv10712668;Alias=ALU_umary_ALU_1645_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592933;submitter_variant_call_id=ALU_umary_ALU_1645_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    154160684    154160684    2    154160684    154160684    345:mobile_element_insertion:0    .    .    .    ID=1761707;Name=essv10714669;Alias=ALU_umary_ALU_1647_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3592954;submitter_variant_call_id=ALU_umary_ALU_1647_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    154494939    154494939    2    154495149    154495149    346:copy_number_loss:210    .    .    .    ID=1764065;Name=essv10716505;Alias=BI_GS_DEL1_B4_P0405_123_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3592964;Start_range=154494940,154494940;End_range=154495150,154495150;submitter_variant_call_id=BI_GS_DEL1_B4_P0405_123_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    155818937    155818937    2    155833161    155833161    347:copy_number_loss:14224    .    .    .    ID=1768955;Name=essv10720013;Alias=DUP_gs_CNV_2_155818938_155833162_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593006;submitter_variant_call_id=DUP_gs_CNV_2_155818938_155833162_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    156527847    156527847    2    156527847    156527847    348:mobile_element_insertion:0    .    .    .    ID=1771200;Name=essv10720805;Alias=L1_umary_LINE1_426_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593029;submitter_variant_call_id=L1_umary_LINE1_426_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    158279990    158279990    2    158279990    158279990    349:mobile_element_insertion:0    .    .    .    ID=1779242;Name=essv10724337;Alias=ALU_umary_ALU_1674_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593059;submitter_variant_call_id=ALU_umary_ALU_1674_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    158510371    158510371    2    158510371    158510371    350:mobile_element_insertion:0    .    .    .    ID=1781265;Name=essv10726308;Alias=ALU_umary_ALU_1677_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593063;submitter_variant_call_id=ALU_umary_ALU_1677_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    159958907    159958907    2    159961501    159961501    351:copy_number_loss:2594    .    .    .    ID=1791216;Name=essv10730047;Alias=YL_CN_MXL_460_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593107;Start_range=159957908,159959408;End_range=159961002,159962502;submitter_variant_call_id=YL_CN_MXL_460_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    160159010    160159010    2    160159010    160159010    352:mobile_element_insertion:0    .    .    .    ID=1792918;Name=essv10731649;Alias=ALU_umary_ALU_1684_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593113;submitter_variant_call_id=ALU_umary_ALU_1684_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    160376321    160376321    2    160376321    160376321    353:mobile_element_insertion:0    .    .    .    ID=1794648;Name=essv10732589;Alias=ALU_umary_ALU_1685_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593118;submitter_variant_call_id=ALU_umary_ALU_1685_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    161952336    161952336    2    161952336    161952336    354:mobile_element_insertion:0    .    .    .    ID=1804440;Name=essv10735552;Alias=ALU_umary_ALU_1695_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593150;submitter_variant_call_id=ALU_umary_ALU_1695_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    162083371    162083371    2    162083371    162083371    355:indel:0    .    .    .    ID=1808522;Name=essv10737721;Alias=PHASE3_V1_SV_261_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593153;submitter_variant_call_id=PHASE3_V1_SV_261_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    162923543    162923543    2    162923543    162923543    356:indel:0    .    .    .    ID=1814924;Name=essv10742119;Alias=PHASE3_V1_SV_262_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593176;submitter_variant_call_id=PHASE3_V1_SV_262_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    167448002    167448002    2    167448002    167448002    357:indel:0    .    .    .    ID=1828604;Name=essv10748807;Alias=PHASE3_V1_SV_267_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593253;submitter_variant_call_id=PHASE3_V1_SV_267_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    167494544    167494544    2    167500588    167500588    358:copy_number_gain:6044    .    .    .    ID=1828629;Name=essv10749211;Alias=DUP_gs_CNV_2_167494545_167500589_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3593256;submitter_variant_call_id=DUP_gs_CNV_2_167494545_167500589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    167545979    167545979    2    167547055    167547055    359:copy_number_loss:1076    .    .    .    ID=1829816;Name=essv10750405;Alias=BI_GS_DEL1_B1_P0418_424_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593258;Start_range=167545980,167545980;End_range=167547056,167547056;submitter_variant_call_id=BI_GS_DEL1_B1_P0418_424_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    169081735    169081735    2    169081735    169081735    360:indel:0    .    .    .    ID=1836370;Name=essv10752279;Alias=PHASE3_V1_SV_268_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593305;submitter_variant_call_id=PHASE3_V1_SV_268_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    169144327    169144327    2    169144327    169144327    361:mobile_element_insertion:0    .    .    .    ID=1838069;Name=essv10753225;Alias=ALU_umary_ALU_1736_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593309;submitter_variant_call_id=ALU_umary_ALU_1736_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    169606131    169606131    2    169606131    169606131    362:indel:0    .    .    .    ID=1841604;Name=essv10755593;Alias=PHASE3_V1_SV_270_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593318;submitter_variant_call_id=PHASE3_V1_SV_270_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    170036334    170036334    2    170036334    170036334    363:mobile_element_insertion:0    .    .    .    ID=1843448;Name=essv10756854;Alias=ALU_umary_ALU_1740_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593321;submitter_variant_call_id=ALU_umary_ALU_1740_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    173316736    173316736    2    173316736    173316736    364:mobile_element_insertion:0    .    .    .    ID=1852261;Name=essv10760954;Alias=ALU_umary_ALU_1754_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593364;submitter_variant_call_id=ALU_umary_ALU_1754_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    173522170    173522170    2    173522170    173522170    365:mobile_element_insertion:0    .    .    .    ID=1852898;Name=essv10761931;Alias=ALU_umary_ALU_1756_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593369;submitter_variant_call_id=ALU_umary_ALU_1756_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    175735944    175735944    2    175735944    175735944    366:mobile_element_insertion:0    .    .    .    ID=1858079;Name=essv10764556;Alias=ALU_umary_ALU_1770_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593414;submitter_variant_call_id=ALU_umary_ALU_1770_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    176728296    176728296    2    176728296    176728296    367:mobile_element_insertion:0    .    .    .    ID=1865030;Name=essv10766125;Alias=ALU_umary_ALU_1778_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593435;submitter_variant_call_id=ALU_umary_ALU_1778_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    177265638    177265638    2    177272039    177272039    368:copy_number_loss:6401    .    .    .    ID=1866961;Name=essv10768090;Alias=UW_VH_21077_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593443;Start_range=177265164,177265639;End_range=177272040,177272448;submitter_variant_call_id=UW_VH_21077_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    178287641    178287641    2    178288051    178288051    369:copy_number_loss:410    .    .    .    ID=1879645;Name=essv10771756;Alias=BI_GS_DEL1_B3_P0429_15_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593461;Start_range=178287642,178287642;End_range=178288052,178288052;submitter_variant_call_id=BI_GS_DEL1_B3_P0429_15_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    178318729    178318729    2    178318729    178318729    370:mobile_element_insertion:0    .    .    .    ID=1881000;Name=essv10772984;Alias=ALU_umary_ALU_1784_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593462;submitter_variant_call_id=ALU_umary_ALU_1784_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    178351471    178351471    2    178351471    178351471    371:mobile_element_insertion:0    .    .    .    ID=1881664;Name=essv10774462;Alias=ALU_umary_ALU_1785_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593463;submitter_variant_call_id=ALU_umary_ALU_1785_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    180065282    180065282    2    180082018    180082018    372:copy_number_loss:16736    .    .    .    ID=1892854;Name=essv10780294;Alias=YL_CN_ITU_577_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593502;Start_range=180064283,180065783;End_range=180081519,180083019;submitter_variant_call_id=YL_CN_ITU_577_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    180340454    180340454    2    180340454    180340454    373:indel:0    .    .    .    ID=1894987;Name=essv10782544;Alias=PHASE3_V1_SV_273_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593506;submitter_variant_call_id=PHASE3_V1_SV_273_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    181000554    181000554    2    181000554    181000554    374:mobile_element_insertion:0    .    .    .    ID=1899140;Name=essv10784433;Alias=L1_umary_LINE1_457_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593520;submitter_variant_call_id=L1_umary_LINE1_457_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    182856890    182856890    2    182857588    182857588    375:copy_number_loss:698    .    .    .    ID=1905812;Name=essv10788114;Alias=BI_GS_DEL1_B2_P0433_642_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593555;Start_range=182856890,182856893;End_range=182857588,182857591;submitter_variant_call_id=BI_GS_DEL1_B2_P0433_642_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    184085514    184085514    2    184090984    184090984    376:copy_number_loss:5470    .    .    .    ID=1907149;Name=essv10788875;Alias=UW_VH_2195_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593584;Start_range=184085196,184085515;End_range=184090985,184091274;submitter_variant_call_id=UW_VH_2195_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    185761572    185761572    2    185761572    185761572    377:mobile_element_insertion:0    .    .    .    ID=1910123;Name=essv10790216;Alias=ALU_umary_ALU_1823_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593631;submitter_variant_call_id=ALU_umary_ALU_1823_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    189163016    189163016    2    189163016    189163016    378:mobile_element_insertion:0    .    .    .    ID=1921268;Name=essv10793340;Alias=ALU_umary_ALU_1838_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593713;submitter_variant_call_id=ALU_umary_ALU_1838_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    189845079    189845079    2    189845079    189845079    379:indel:0    .    .    .    ID=1924266;Name=essv10795642;Alias=PHASE3_V1_SV_277_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593730;submitter_variant_call_id=PHASE3_V1_SV_277_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    189853874    189853874    2    189853874    189853874    380:mobile_element_insertion:0    .    .    .    ID=1924697;Name=essv10796657;Alias=ALU_umary_ALU_1846_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593731;submitter_variant_call_id=ALU_umary_ALU_1846_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    189959433    189959433    2    189959433    189959433    381:mobile_element_insertion:0    .    .    .    ID=1926154;Name=essv10798147;Alias=ALU_umary_ALU_1847_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593734;submitter_variant_call_id=ALU_umary_ALU_1847_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    191680779    191680779    2    191680779    191680779    382:indel:0    .    .    .    ID=1935064;Name=essv10802819;Alias=PHASE3_V1_SV_279_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593759;submitter_variant_call_id=PHASE3_V1_SV_279_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    192840052    192840052    2    192840052    192840052    383:mobile_element_insertion:0    .    .    .    ID=1939558;Name=essv10804780;Alias=ALU_umary_ALU_1860_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593778;submitter_variant_call_id=ALU_umary_ALU_1860_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    194689468    194689468    2    194698781    194698781    384:copy_number_loss:9313    .    .    .    ID=1947475;Name=essv10808900;Alias=SI_BD_2516_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593816;Start_range=194689203,194689519;End_range=194698732,194699048;submitter_variant_call_id=SI_BD_2516_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    196214817    196214817    2    196215227    196215227    385:copy_number_loss:410    .    .    .    ID=1958501;Name=essv10814510;Alias=BI_GS_DEL1_B1_P0447_186_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593865;Start_range=196214818,196214818;End_range=196215228,196215228;submitter_variant_call_id=BI_GS_DEL1_B1_P0447_186_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    198763461    198763461    2    198763461    198763461    386:mobile_element_insertion:0    .    .    .    ID=1963680;Name=essv10817042;Alias=ALU_umary_ALU_1894_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593916;submitter_variant_call_id=ALU_umary_ALU_1894_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    200312453    200312453    2    200312678    200312678    387:copy_number_loss:225    .    .    .    ID=1969176;Name=essv10819456;Alias=BI_GS_DEL1_B2_P0451_222_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3593946;Start_range=200312454,200312454;End_range=200312679,200312679;submitter_variant_call_id=BI_GS_DEL1_B2_P0451_222_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    201691350    201691350    2    201691350    201691350    388:indel:0    .    .    .    ID=1975232;Name=essv10822255;Alias=PHASE3_V1_SV_284_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3593966;submitter_variant_call_id=PHASE3_V1_SV_284_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    202631459    202631459    2    202631459    202631459    389:mobile_element_insertion:0    .    .    .    ID=1978311;Name=essv10824085;Alias=ALU_umary_ALU_1912_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3593984;submitter_variant_call_id=ALU_umary_ALU_1912_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    204181529    204181529    2    204191630    204191630    390:copy_number_loss:10101    .    .    .    ID=1980476;Name=essv10825308;Alias=BI_GS_DEL1_B5_P0455_139_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594013;Start_range=204181483,204181577;End_range=204191584,204191678;submitter_variant_call_id=BI_GS_DEL1_B5_P0455_139_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    205185254    205185254    2    205185254    205185254    391:indel:0    .    .    .    ID=1984001;Name=essv10826880;Alias=PHASE3_V1_SV_287_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3594025;submitter_variant_call_id=PHASE3_V1_SV_287_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    207976901    207976901    2    207976901    207976901    392:mobile_element_insertion:0    .    .    .    ID=1992310;Name=essv10829855;Alias=ALU_umary_ALU_1932_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594078;submitter_variant_call_id=ALU_umary_ALU_1932_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    208351100    208351100    2    208359312    208359312    393:copy_number_loss:8212    .    .    .    ID=1993555;Name=essv10830605;Alias=SI_BD_2582_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594087;Start_range=208350805,208351293;End_range=208359263,208359609;submitter_variant_call_id=SI_BD_2582_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    208472416    208472416    2    208472416    208472416    394:mobile_element_insertion:0    .    .    .    ID=1994213;Name=essv10832147;Alias=ALU_umary_ALU_1934_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594089;submitter_variant_call_id=ALU_umary_ALU_1934_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    209942970    209942970    2    209948926    209948926    395:copy_number_loss:5956    .    .    .    ID=1999771;Name=essv10834206;Alias=SI_BD_2592_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594137;Start_range=209942827,209943021;End_range=209948877,209949071;submitter_variant_call_id=SI_BD_2592_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    210260753    210260753    2    210260753    210260753    396:mobile_element_insertion:0    .    .    .    ID=2000259;Name=essv10835076;Alias=ALU_umary_ALU_1947_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594147;submitter_variant_call_id=ALU_umary_ALU_1947_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    212707196    212707196    2    212707196    212707196    397:mobile_element_insertion:0    .    .    .    ID=2005914;Name=essv10835923;Alias=L1_umary_LINE1_504_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594182;submitter_variant_call_id=L1_umary_LINE1_504_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    212708355    212708355    2    212708355    212708355    398:mobile_element_insertion:0    .    .    .    ID=2006678;Name=essv10836578;Alias=ALU_umary_ALU_1959_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594183;submitter_variant_call_id=ALU_umary_ALU_1959_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    212925323    212925323    2    212925323    212925323    399:mobile_element_insertion:0    .    .    .    ID=2008676;Name=essv10838285;Alias=ALU_umary_ALU_1961_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594192;submitter_variant_call_id=ALU_umary_ALU_1961_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    215201640    215201640    2    215201640    215201640    400:mobile_element_insertion:0    .    .    .    ID=2017512;Name=essv10843011;Alias=ALU_umary_ALU_1973_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594258;submitter_variant_call_id=ALU_umary_ALU_1973_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    215728761    215728761    2    215730831    215730831    401:copy_number_loss:2070    .    .    .    ID=2021196;Name=essv10844686;Alias=BI_GS_DEL1_B1_P0466_668_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594270;Start_range=215728762,215728762;End_range=215730832,215730832;submitter_variant_call_id=BI_GS_DEL1_B1_P0466_668_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    216548434    216548434    2    216548434    216548434    402:mobile_element_insertion:0    .    .    .    ID=2022322;Name=essv10845924;Alias=ALU_umary_ALU_1978_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594280;submitter_variant_call_id=ALU_umary_ALU_1978_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    217955890    217955890    2    217957272    217957272    403:copy_number_loss:1382    .    .    .    ID=2027393;Name=essv10846633;Alias=BI_GS_DEL1_B5_P0468_1305_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594306;Start_range=217955891,217955891;End_range=217957273,217957273;submitter_variant_call_id=BI_GS_DEL1_B5_P0468_1305_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    218180771    218180771    2    218180771    218180771    404:mobile_element_insertion:0    .    .    .    ID=2028881;Name=essv10848065;Alias=ALU_umary_ALU_1985_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594313;submitter_variant_call_id=ALU_umary_ALU_1985_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    219576608    219576608    2    219576608    219576608    405:mobile_element_insertion:0    .    .    .    ID=2037313;Name=essv10851385;Alias=ALU_umary_ALU_1992_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594348;submitter_variant_call_id=ALU_umary_ALU_1992_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    220052321    220052321    2    220052914    220052914    406:copy_number_loss:593    .    .    .    ID=2039557;Name=essv10852762;Alias=BI_GS_DEL1_B5_P0471_61_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594355;Start_range=220052322,220052323;End_range=220052915,220052916;submitter_variant_call_id=BI_GS_DEL1_B5_P0471_61_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    220052750    220052750    2    220056377    220056377    407:copy_number_loss:3627    .    .    .    ID=2041663;Name=essv10854284;Alias=YL_CN_ITU_607_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594356;Start_range=220051751,220053251;End_range=220055878,220057378;submitter_variant_call_id=YL_CN_ITU_607_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    220937927    220937927    2    220937927    220937927    408:mobile_element_insertion:0    .    .    .    ID=2047982;Name=essv10858040;Alias=ALU_umary_ALU_1997_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594373;submitter_variant_call_id=ALU_umary_ALU_1997_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    223882883    223882883    2    223882883    223882883    409:mobile_element_insertion:0    .    .    .    ID=2059770;Name=essv10864028;Alias=ALU_umary_ALU_2011_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594436;submitter_variant_call_id=ALU_umary_ALU_2011_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    226753689    226753689    2    226753689    226753689    410:mobile_element_insertion:0    .    .    .    ID=2068957;Name=essv10868160;Alias=ALU_umary_ALU_2026_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594501;submitter_variant_call_id=ALU_umary_ALU_2026_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    232279813    232279813    2    232279813    232279813    411:mobile_element_insertion:0    .    .    .    ID=2083744;Name=essv10875990;Alias=ALU_umary_ALU_2046_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594623;submitter_variant_call_id=ALU_umary_ALU_2046_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    233332724    233332724    2    233333473    233333473    412:copy_number_loss:749    .    .    .    ID=2088025;Name=essv10877428;Alias=BI_GS_DEL1_B4_P0484_67_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594654;Start_range=233332725,233332725;End_range=233333474,233333474;submitter_variant_call_id=BI_GS_DEL1_B4_P0484_67_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    233845892    233845892    2    233845892    233845892    413:mobile_element_insertion:0    .    .    .    ID=2089201;Name=essv10878971;Alias=ALU_umary_ALU_2051_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594667;submitter_variant_call_id=ALU_umary_ALU_2051_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    235519809    235519809    2    235519809    235519809    414:mobile_element_insertion:0    .    .    .    ID=2094842;Name=essv10880502;Alias=L1_umary_LINE1_530_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594693;submitter_variant_call_id=L1_umary_LINE1_530_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
2    235546735    235546735    2    235546735    235546735    415:indel:0    .    .    .    ID=2096353;Name=essv10882350;Alias=PHASE3_V1_SV_304_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3594694;submitter_variant_call_id=PHASE3_V1_SV_304_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    237757892    237757892    2    237757892    237757892    416:mobile_element_insertion:0    .    .    .    ID=2103882;Name=essv10886142;Alias=ALU_umary_ALU_2063_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3594735;submitter_variant_call_id=ALU_umary_ALU_2063_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    238520946    238520946    2    238520946    238520946    417:indel:0    .    .    .    ID=2105924;Name=essv10887181;Alias=PHASE3_V1_SV_306_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3594747;submitter_variant_call_id=PHASE3_V1_SV_306_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
2    242048500    242048500    2    242048500    242048500    418:indel:0    .    .    .    ID=2119727;Name=essv10892655;Alias=PHASE3_V1_SV_310_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3594819;submitter_variant_call_id=PHASE3_V1_SV_310_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    228933    228933    3    234184    234184    419:copy_number_loss:5251    .    .    .    ID=2126149;Name=essv10897104;Alias=DUP_gs_CNV_3_228934_234185_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3594886;submitter_variant_call_id=DUP_gs_CNV_3_228934_234185_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    2962003    2962003    3    2962003    2962003    420:mobile_element_insertion:0    .    .    .    ID=2135158;Name=essv10901389;Alias=ALU_umary_ALU_2103_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595044;submitter_variant_call_id=ALU_umary_ALU_2103_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    3723307    3723307    3    3723307    3723307    421:indel:0    .    .    .    ID=2138543;Name=essv10903274;Alias=PHASE3_V1_SV_314_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595065;submitter_variant_call_id=PHASE3_V1_SV_314_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    4205160    4205160    3    4205160    4205160    422:mobile_element_insertion:0    .    .    .    ID=2142251;Name=essv10904829;Alias=ALU_umary_ALU_2109_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595094;submitter_variant_call_id=ALU_umary_ALU_2109_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    6525410    6525410    3    6525410    6525410    423:mobile_element_insertion:0    .    .    .    ID=2149682;Name=essv10908785;Alias=ALU_umary_ALU_2124_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595159;submitter_variant_call_id=ALU_umary_ALU_2124_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    6650201    6650201    3    6654629    6654629    424:copy_number_loss:4428    .    .    .    ID=2151559;Name=essv10909648;Alias=UW_VH_1720_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595165;Start_range=6649808,6650202;End_range=6654630,6655027;submitter_variant_call_id=UW_VH_1720_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    6700871    6700871    3    6701253    6701253    425:copy_number_loss:382    .    .    .    ID=2154084;Name=essv10910875;Alias=BI_GS_DEL1_B4_P0501_172_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595168;Start_range=6700872,6700872;End_range=6701254,6701254;submitter_variant_call_id=BI_GS_DEL1_B4_P0501_172_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    7130384    7130384    3    7130384    7130384    426:mobile_element_insertion:0    .    .    .    ID=2159219;Name=essv10912643;Alias=ALU_umary_ALU_2129_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595178;submitter_variant_call_id=ALU_umary_ALU_2129_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    7133400    7133400    3    7133400    7133400    427:mobile_element_insertion:0    .    .    .    ID=2161693;Name=essv10914303;Alias=ALU_umary_ALU_2130_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595179;submitter_variant_call_id=ALU_umary_ALU_2130_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    8325605    8325605    3    8326806    8326806    428:copy_number_loss:1201    .    .    .    ID=2165973;Name=essv10917037;Alias=BI_GS_DEL1_B5_P0503_440_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595214;Start_range=8325605,8325607;End_range=8326806,8326808;submitter_variant_call_id=BI_GS_DEL1_B5_P0503_440_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    10282976    10282976    3    10282976    10282976    429:indel:0    .    .    .    ID=2171516;Name=essv10919682;Alias=PHASE3_V1_SV_317_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595273;submitter_variant_call_id=PHASE3_V1_SV_317_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    10549594    10549594    3    10549594    10549594    430:indel:0    .    .    .    ID=2174019;Name=essv10920775;Alias=PHASE3_V1_SV_319_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595276;submitter_variant_call_id=PHASE3_V1_SV_319_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    11108254    11108254    3    11111869    11111869    431:copy_number_loss:3615    .    .    .    ID=2175480;Name=essv10921544;Alias=BI_GS_DEL1_B3_P0506_3_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595286;Start_range=11108253,11108258;End_range=11111868,11111873;submitter_variant_call_id=BI_GS_DEL1_B3_P0506_3_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    12137072    12137072    3    12137072    12137072    432:mobile_element_insertion:0    .    .    .    ID=2184268;Name=essv10925664;Alias=ALU_umary_ALU_2157_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595314;submitter_variant_call_id=ALU_umary_ALU_2157_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    12196517    12196517    3    12196517    12196517    433:indel:0    .    .    .    ID=2187750;Name=essv10927800;Alias=PHASE3_V1_SV_320_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595316;submitter_variant_call_id=PHASE3_V1_SV_320_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    12818467    12818467    3    12818467    12818467    434:mobile_element_insertion:0    .    .    .    ID=2193510;Name=essv10930566;Alias=ALU_umary_ALU_2160_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595337;submitter_variant_call_id=ALU_umary_ALU_2160_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    13141432    13141432    3    13142590    13142590    435:copy_number_loss:1158    .    .    .    ID=2195209;Name=essv10931321;Alias=BI_GS_DEL1_B5_P0508_155_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595346;Start_range=13141433,13141433;End_range=13142591,13142591;submitter_variant_call_id=BI_GS_DEL1_B5_P0508_155_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    15779029    15779029    3    15779029    15779029    436:indel:0    .    .    .    ID=2204403;Name=essv10935553;Alias=PHASE3_V1_SV_321_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595391;submitter_variant_call_id=PHASE3_V1_SV_321_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    16239409    16239409    3    16241212    16241212    437:copy_number_loss:1803    .    .    .    ID=2209705;Name=essv10938369;Alias=BI_GS_DEL1_B1_P0511_275_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595400;Start_range=16239410,16239410;End_range=16241213,16241213;submitter_variant_call_id=BI_GS_DEL1_B1_P0511_275_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    18729953    18729953    3    18730776    18730776    438:copy_number_loss:823    .    .    .    ID=2213280;Name=essv10940244;Alias=BI_GS_DEL1_B4_P0513_169_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595438;Start_range=18729954,18729954;End_range=18730777,18730777;submitter_variant_call_id=BI_GS_DEL1_B4_P0513_169_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    18995916    18995916    3    18995916    18995916    439:mobile_element_insertion:0    .    .    .    ID=2215835;Name=essv10940611;Alias=ALU_umary_ALU_2187_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595444;submitter_variant_call_id=ALU_umary_ALU_2187_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    19035451    19035451    3    19035451    19035451    440:mobile_element_insertion:0    .    .    .    ID=2216533;Name=essv10942045;Alias=ALU_umary_ALU_2188_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595445;submitter_variant_call_id=ALU_umary_ALU_2188_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    20484405    20484405    3    20484405    20484405    441:indel:0    .    .    .    ID=2224088;Name=essv10945381;Alias=PHASE3_V1_SV_328_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595482;submitter_variant_call_id=PHASE3_V1_SV_328_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    21723721    21723721    3    21725953    21725953    442:copy_number_loss:2232    .    .    .    ID=2228337;Name=essv10947707;Alias=BI_GS_DEL1_B2_P0516_489_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595516;Start_range=21723722,21723722;End_range=21725954,21725954;submitter_variant_call_id=BI_GS_DEL1_B2_P0516_489_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    24987873    24987873    3    24987873    24987873    443:mobile_element_insertion:0    .    .    .    ID=2234460;Name=essv10950839;Alias=L1_umary_LINE1_564_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595593;submitter_variant_call_id=L1_umary_LINE1_564_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    25030879    25030879    3    25032245    25032245    444:copy_number_loss:1366    .    .    .    ID=2238669;Name=essv10952379;Alias=UW_VH_3644_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595595;Start_range=25030298,25030880;End_range=25032246,25032732;submitter_variant_call_id=UW_VH_3644_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    25278458    25278458    3    25278458    25278458    445:mobile_element_insertion:0    .    .    .    ID=2240030;Name=essv10953476;Alias=ALU_umary_ALU_2227_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595601;submitter_variant_call_id=ALU_umary_ALU_2227_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    26450939    26450939    3    26452300    26452300    446:copy_number_loss:1361    .    .    .    ID=2248675;Name=essv10955793;Alias=BI_GS_DEL1_B5_P0521_520_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595637;Start_range=26450940,26450941;End_range=26452301,26452302;submitter_variant_call_id=BI_GS_DEL1_B5_P0521_520_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    26451163    26451163    3    26451659    26451659    447:copy_number_loss:496    .    .    .    ID=2249393;Name=essv10957015;Alias=BI_GS_DEL1_B4_P0521_110_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595638;Start_range=26451147,26451182;End_range=26451643,26451678;submitter_variant_call_id=BI_GS_DEL1_B4_P0521_110_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    26469887    26469887    3    26469887    26469887    448:indel:0    .    .    .    ID=2252056;Name=essv10959123;Alias=PHASE3_V1_SV_334_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595640;submitter_variant_call_id=PHASE3_V1_SV_334_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    28280421    28280421    3    28280421    28280421    449:indel:0    .    .    .    ID=2260202;Name=essv10963689;Alias=PHASE3_V1_SV_335_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3595685;submitter_variant_call_id=PHASE3_V1_SV_335_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    28707067    28707067    3    28707067    28707067    450:mobile_element_insertion:0    .    .    .    ID=2265124;Name=essv10965773;Alias=ALU_umary_ALU_2247_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595697;submitter_variant_call_id=ALU_umary_ALU_2247_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    28840178    28840178    3    28840178    28840178    451:mobile_element_insertion:0    .    .    .    ID=2266754;Name=essv10966799;Alias=ALU_umary_ALU_2248_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595702;submitter_variant_call_id=ALU_umary_ALU_2248_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    31881397    31881397    3    31881397    31881397    452:mobile_element_insertion:0    .    .    .    ID=2278656;Name=essv10972365;Alias=ALU_umary_ALU_2265_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595761;submitter_variant_call_id=ALU_umary_ALU_2265_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    32102049    32102049    3    32107886    32107886    453:copy_number_loss:5837    .    .    .    ID=2282165;Name=essv10974205;Alias=BI_GS_DEL1_B1_P0527_95_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595767;Start_range=32102050,32102050;End_range=32107887,32107887;submitter_variant_call_id=BI_GS_DEL1_B1_P0527_95_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    32806740    32806740    3    32808055    32808055    454:copy_number_loss:1315    .    .    .    ID=2288478;Name=essv10977225;Alias=EM_DL_DEL10685044_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595781;Start_range=32806591,32806891;End_range=32807906,32808206;submitter_variant_call_id=EM_DL_DEL10685044_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    37604439    37604439    3    37604439    37604439    455:mobile_element_insertion:0    .    .    .    ID=2299994;Name=essv10983185;Alias=ALU_umary_ALU_2294_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595894;submitter_variant_call_id=ALU_umary_ALU_2294_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    38399707    38399707    3    38399707    38399707    456:mobile_element_insertion:0    .    .    .    ID=2303200;Name=essv10984905;Alias=ALU_umary_ALU_2298_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595909;submitter_variant_call_id=ALU_umary_ALU_2298_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    38626081    38626081    3    38626081    38626081    457:mobile_element_insertion:0    .    .    .    ID=2308070;Name=essv10987055;Alias=L1_umary_LINE1_580_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3595913;submitter_variant_call_id=L1_umary_LINE1_580_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    41336621    41336621    3    41337192    41337192    458:copy_number_loss:571    .    .    .    ID=2314480;Name=essv10990475;Alias=BI_GS_DEL1_B1_P0536_358_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3595966;Start_range=41336612,41336632;End_range=41337183,41337203;submitter_variant_call_id=BI_GS_DEL1_B1_P0536_358_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    42898419    42898419    3    42898419    42898419    459:mobile_element_insertion:0    .    .    .    ID=2319220;Name=essv10992576;Alias=ALU_umary_ALU_2319_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596006;submitter_variant_call_id=ALU_umary_ALU_2319_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    45542661    45542661    3    45542661    45542661    460:mobile_element_insertion:0    .    .    .    ID=2326626;Name=essv10996523;Alias=ALU_umary_ALU_2325_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596050;submitter_variant_call_id=ALU_umary_ALU_2325_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    45831051    45831051    3    45831051    45831051    461:indel:0    .    .    .    ID=2331137;Name=essv10998403;Alias=PHASE3_V1_SV_352_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3596056;submitter_variant_call_id=PHASE3_V1_SV_352_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    47490668    47490668    3    47493443    47493443    462:copy_number_loss:2775    .    .    .    ID=2338030;Name=essv11002147;Alias=BI_GS_DEL1_B1_P0542_369_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596080;Start_range=47490669,47490669;End_range=47493444,47493444;submitter_variant_call_id=BI_GS_DEL1_B1_P0542_369_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    47782872    47782872    3    47782872    47782872    463:mobile_element_insertion:0    .    .    .    ID=2342156;Name=essv11003803;Alias=ALU_umary_ALU_2333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596091;submitter_variant_call_id=ALU_umary_ALU_2333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    48441784    48441784    3    48441784    48441784    464:indel:0    .    .    .    ID=2345983;Name=essv11006236;Alias=PHASE3_V1_SV_353_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3596108;submitter_variant_call_id=PHASE3_V1_SV_353_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    48746087    48746087    3    48746087    48746087    465:mobile_element_insertion:0    .    .    .    ID=2347930;Name=essv11006958;Alias=ALU_umary_ALU_2340_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596112;submitter_variant_call_id=ALU_umary_ALU_2340_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    50063038    50063038    3    50063038    50063038    466:mobile_element_insertion:0    .    .    .    ID=2355209;Name=essv11010482;Alias=ALU_umary_ALU_2346_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596136;submitter_variant_call_id=ALU_umary_ALU_2346_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    50879174    50879174    3    50879174    50879174    467:mobile_element_insertion:0    .    .    .    ID=2358848;Name=essv11012553;Alias=ALU_umary_ALU_2347_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596147;submitter_variant_call_id=ALU_umary_ALU_2347_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    55788579    55788579    3    55788579    55788579    468:mobile_element_insertion:0    .    .    .    ID=2367332;Name=essv11016707;Alias=L1_umary_LINE1_590_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596197;submitter_variant_call_id=L1_umary_LINE1_590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    56604703    56604703    3    56604960    56604960    469:copy_number_loss:257    .    .    .    ID=2373141;Name=essv11019126;Alias=BI_GS_DEL1_B1_P0551_612_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596212;Start_range=56604704,56604704;End_range=56604961,56604961;submitter_variant_call_id=BI_GS_DEL1_B1_P0551_612_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    57564191    57564191    3    57564191    57564191    470:mobile_element_insertion:0    .    .    .    ID=2374734;Name=essv11020366;Alias=ALU_umary_ALU_2369_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596234;submitter_variant_call_id=ALU_umary_ALU_2369_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    59852902    59852902    3    59852902    59852902    471:mobile_element_insertion:0    .    .    .    ID=2382350;Name=essv11025054;Alias=L1_umary_LINE1_597_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596287;submitter_variant_call_id=L1_umary_LINE1_597_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    65188825    65188825    3    65214722    65214722    472:copy_number_loss:25897    .    .    .    ID=2394928;Name=essv11030244;Alias=SI_BD_3220_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596416;Start_range=65188588,65188912;End_range=65214673,65214961;submitter_variant_call_id=SI_BD_3220_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    68634739    68634739    3    68640253    68640253    473:copy_number_loss:5514    .    .    .    ID=2400533;Name=essv11032688;Alias=UW_VH_2022_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596484;Start_range=68634224,68634740;End_range=68640254,68640821;submitter_variant_call_id=UW_VH_2022_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    68739654    68739654    3    68747878    68747878    474:copy_number_loss:8224    .    .    .    ID=2404864;Name=essv11034737;Alias=SI_BD_3235_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596486;Start_range=68739422,68739761;End_range=68747829,68748112;submitter_variant_call_id=SI_BD_3235_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    70013450    70013450    3    70013888    70013888    475:copy_number_loss:438    .    .    .    ID=2410152;Name=essv11037752;Alias=BI_GS_DEL1_B1_P0565_12_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596506;Start_range=70013451,70013452;End_range=70013889,70013890;submitter_variant_call_id=BI_GS_DEL1_B1_P0565_12_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    74255419    74255419    3    74255419    74255419    476:mobile_element_insertion:0    .    .    .    ID=2414434;Name=essv11039814;Alias=ALU_umary_ALU_2444_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596568;submitter_variant_call_id=ALU_umary_ALU_2444_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    75583323    75583323    3    75590595    75590595    477:copy_number_loss:7272    .    .    .    ID=2423284;Name=essv11043825;Alias=BI_GS_CNV_3_75583324_75590596_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596609;Start_range=75582824,75583324;End_range=75590596,75591096;submitter_variant_call_id=BI_GS_CNV_3_75583324_75590596_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    78779424    78779424    3    78779723    78779723    478:copy_number_loss:299    .    .    .    ID=2435591;Name=essv11050298;Alias=BI_GS_DEL1_B3_P0573_35_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3596690;Start_range=78779425,78779425;End_range=78779724,78779724;submitter_variant_call_id=BI_GS_DEL1_B3_P0573_35_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    83304065    83304065    3    83304065    83304065    479:mobile_element_insertion:0    .    .    .    ID=2451253;Name=essv11058028;Alias=ALU_umary_ALU_2487_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596787;submitter_variant_call_id=ALU_umary_ALU_2487_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    84433394    84433394    3    84433394    84433394    480:mobile_element_insertion:0    .    .    .    ID=2456664;Name=essv11060471;Alias=L1_umary_LINE1_627_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596816;submitter_variant_call_id=L1_umary_LINE1_627_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    85576570    85576570    3    85576570    85576570    481:mobile_element_insertion:0    .    .    .    ID=2460613;Name=essv11062644;Alias=L1_umary_LINE1_629_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596843;submitter_variant_call_id=L1_umary_LINE1_629_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    87520482    87520482    3    87520482    87520482    482:mobile_element_insertion:0    .    .    .    ID=2465634;Name=essv11065129;Alias=ALU_umary_ALU_2504_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596890;submitter_variant_call_id=ALU_umary_ALU_2504_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    88478161    88478161    3    88478161    88478161    483:mobile_element_insertion:0    .    .    .    ID=2469585;Name=essv11066827;Alias=ALU_umary_ALU_2509_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3596925;submitter_variant_call_id=ALU_umary_ALU_2509_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    95465760    95465760    3    95468119    95468119    484:copy_number_loss:2359    .    .    .    ID=2478535;Name=essv11072507;Alias=UW_VH_297_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597054;Start_range=95465542,95465761;End_range=95468120,95468397;submitter_variant_call_id=UW_VH_297_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    98410647    98410647    3    98414802    98414802    485:copy_number_loss:4155    .    .    .    ID=2487304;Name=essv11076373;Alias=UW_VH_2359_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597121;Start_range=98410143,98410648;End_range=98414803,98415162;submitter_variant_call_id=UW_VH_2359_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    98726775    98726775    3    98726775    98726775    486:mobile_element_insertion:0    .    .    .    ID=2490264;Name=essv11078229;Alias=ALU_umary_ALU_2552_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597124;submitter_variant_call_id=ALU_umary_ALU_2552_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    98899062    98899062    3    98902395    98902395    487:copy_number_loss:3333    .    .    .    ID=2494130;Name=essv11081343;Alias=BI_GS_DEL1_B1_P0593_764_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597136;Start_range=98899063,98899063;End_range=98902396,98902396;submitter_variant_call_id=BI_GS_DEL1_B1_P0593_764_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    98943803    98943803    3    98949515    98949515    488:copy_number_loss:5712    .    .    .    ID=2495355;Name=essv11082582;Alias=BI_GS_DEL1_B4_P0593_222_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597140;Start_range=98943804,98943804;End_range=98949516,98949516;submitter_variant_call_id=BI_GS_DEL1_B4_P0593_222_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    99628780    99628780    3    99629630    99629630    489:copy_number_loss:850    .    .    .    ID=2502449;Name=essv11083607;Alias=BI_GS_DEL1_B5_P0594_830_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597161;Start_range=99628781,99628781;End_range=99629631,99629631;submitter_variant_call_id=BI_GS_DEL1_B5_P0594_830_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    100112530    100112530    3    100112530    100112530    490:mobile_element_insertion:0    .    .    .    ID=2504409;Name=essv11084421;Alias=ALU_umary_ALU_2564_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597172;submitter_variant_call_id=ALU_umary_ALU_2564_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    100177265    100177265    3    100177265    100177265    491:mobile_element_insertion:0    .    .    .    ID=2505444;Name=essv11085378;Alias=ALU_umary_ALU_2565_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597173;submitter_variant_call_id=ALU_umary_ALU_2565_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    100410559    100410559    3    100410559    100410559    492:mobile_element_insertion:0    .    .    .    ID=2507144;Name=essv11086666;Alias=ALU_umary_ALU_2567_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597179;submitter_variant_call_id=ALU_umary_ALU_2567_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    100521567    100521567    3    100522470    100522470    493:copy_number_loss:903    .    .    .    ID=2509288;Name=essv11087334;Alias=BI_GS_DEL1_B2_P0595_364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597180;Start_range=100521558,100521579;End_range=100522461,100522482;submitter_variant_call_id=BI_GS_DEL1_B2_P0595_364_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    103453395    103453395    3    103453395    103453395    494:mobile_element_insertion:0    .    .    .    ID=2516690;Name=essv11091315;Alias=ALU_umary_ALU_2578_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597233;submitter_variant_call_id=ALU_umary_ALU_2578_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    104278167    104278167    3    104279029    104279029    495:copy_number_loss:862    .    .    .    ID=2520974;Name=essv11092738;Alias=BI_GS_DEL1_B1_P0599_199_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597257;Start_range=104278166,104278170;End_range=104279028,104279032;submitter_variant_call_id=BI_GS_DEL1_B1_P0599_199_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    106289200    106289200    3    106289200    106289200    496:mobile_element_insertion:0    .    .    .    ID=2523728;Name=essv11094310;Alias=ALU_umary_ALU_2591_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597290;submitter_variant_call_id=ALU_umary_ALU_2591_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    110271028    110271028    3    110271028    110271028    497:mobile_element_insertion:0    .    .    .    ID=2534913;Name=essv11099560;Alias=ALU_umary_ALU_2610_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597376;submitter_variant_call_id=ALU_umary_ALU_2610_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    111226374    111226374    3    111226374    111226374    498:mobile_element_insertion:0    .    .    .    ID=2538445;Name=essv11101920;Alias=ALU_umary_ALU_2616_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597392;submitter_variant_call_id=ALU_umary_ALU_2616_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    111243592    111243592    3    111248854    111248854    499:copy_number_loss:5262    .    .    .    ID=2539523;Name=essv11103011;Alias=BI_GS_CNV_3_111243593_111248855_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597393;Start_range=111243093,111243593;End_range=111248855,111249355;submitter_variant_call_id=BI_GS_CNV_3_111243593_111248855_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    113047155    113047155    3    113047155    113047155    500:mobile_element_insertion:0    .    .    .    ID=2548446;Name=essv11106317;Alias=ALU_umary_ALU_2627_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597435;submitter_variant_call_id=ALU_umary_ALU_2627_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    114915093    114915093    3    114915093    114915093    501:mobile_element_insertion:0    .    .    .    ID=2554656;Name=essv11109448;Alias=ALU_umary_ALU_2641_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597469;submitter_variant_call_id=ALU_umary_ALU_2641_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    115018214    115018214    3    115018214    115018214    502:mobile_element_insertion:0    .    .    .    ID=2555341;Name=essv11109777;Alias=ALU_umary_ALU_2642_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597471;submitter_variant_call_id=ALU_umary_ALU_2642_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    118281606    118281606    3    118281828    118281828    503:copy_number_loss:222    .    .    .    ID=2565454;Name=essv11115512;Alias=BI_GS_DEL1_B5_P0613_350_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597538;Start_range=118281607,118281607;End_range=118281829,118281829;submitter_variant_call_id=BI_GS_DEL1_B5_P0613_350_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    119893983    119893983    3    119894447    119894447    504:copy_number_loss:464    .    .    .    ID=2574590;Name=essv11119701;Alias=BI_GS_DEL1_B4_P0614_212_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597570;Start_range=119893984,119893984;End_range=119894448,119894448;submitter_variant_call_id=BI_GS_DEL1_B4_P0614_212_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    120318982    120318982    3    120318982    120318982    505:mobile_element_insertion:0    .    .    .    ID=2578640;Name=essv11121407;Alias=ALU_umary_ALU_2666_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597578;submitter_variant_call_id=ALU_umary_ALU_2666_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    123209273    123209273    3    123209273    123209273    506:mobile_element_insertion:0    .    .    .    ID=2586068;Name=essv11125142;Alias=ALU_umary_ALU_2677_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597625;submitter_variant_call_id=ALU_umary_ALU_2677_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    124808630    124808630    3    124808630    124808630    507:mobile_element_insertion:0    .    .    .    ID=2590113;Name=essv11127745;Alias=ALU_umary_ALU_2685_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597647;submitter_variant_call_id=ALU_umary_ALU_2685_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    124936319    124936319    3    124937212    124937212    508:copy_number_loss:893    .    .    .    ID=2592735;Name=essv11129342;Alias=SI_BD_3505_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597652;Start_range=124935998,124936417;End_range=124937043,124937535;submitter_variant_call_id=SI_BD_3505_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    126064634    126064634    3    126064634    126064634    509:indel:0    .    .    .    ID=2600553;Name=essv11131766;Alias=PHASE3_V1_SV_400_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3597680;submitter_variant_call_id=PHASE3_V1_SV_400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    128173061    128173061    3    128173061    128173061    510:indel:0    .    .    .    ID=2609170;Name=essv11137521;Alias=PHASE3_V1_SV_404_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3597708;submitter_variant_call_id=PHASE3_V1_SV_404_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    128395221    128395221    3    128395221    128395221    511:mobile_element_insertion:0    .    .    .    ID=2612262;Name=essv11139860;Alias=ALU_umary_ALU_2697_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597718;submitter_variant_call_id=ALU_umary_ALU_2697_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    128672139    128672139    3    128675333    128675333    512:copy_number_loss:3194    .    .    .    ID=2618350;Name=essv11142502;Alias=YL_CN_PJL_793_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597729;Start_range=128671140,128672640;End_range=128674834,128676334;submitter_variant_call_id=YL_CN_PJL_793_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    129763167    129763167    3    129806783    129806783    513:copy_number_loss:43616    .    .    .    ID=2630309;Name=essv11147519;Alias=BI_GS_DEL1_B3_P0624_27_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597754;Start_range=129763163,129763174;End_range=129806779,129806790;submitter_variant_call_id=BI_GS_DEL1_B3_P0624_27_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    129774131    129774131    3    129780956    129780956    514:copy_number_loss:6825    .    .    .    ID=2630859;Name=essv11148767;Alias=BI_GS_DEL1_B1_P0624_652_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597755;Start_range=129774067,129774198;End_range=129780892,129781023;submitter_variant_call_id=BI_GS_DEL1_B1_P0624_652_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    129938433    129938433    3    129938433    129938433    515:mobile_element_insertion:0    .    .    .    ID=2632567;Name=essv11150776;Alias=ALU_umary_ALU_2701_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597758;submitter_variant_call_id=ALU_umary_ALU_2701_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    130131995    130131995    3    130132923    130132923    516:copy_number_loss:928    .    .    .    ID=2637881;Name=essv11151546;Alias=UW_VH_23248_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597766;Start_range=130131755,130131996;End_range=130132924,130132992;submitter_variant_call_id=UW_VH_23248_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    131708251    131708251    3    131713383    131713383    517:copy_number_loss:5132    .    .    .    ID=2641882;Name=essv11152895;Alias=UW_VH_2783_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597813;Start_range=131707854,131708252;End_range=131713384,131713767;submitter_variant_call_id=UW_VH_2783_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    133849758    133849758    3    133849758    133849758    518:indel:0    .    .    .    ID=2648568;Name=essv11155837;Alias=PHASE3_V1_SV_410_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3597853;submitter_variant_call_id=PHASE3_V1_SV_410_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    136020923    136020923    3    136026325    136026325    519:copy_number_loss:5402    .    .    .    ID=2651631;Name=essv11157960;Alias=YL_CN_LWK_752_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597888;Start_range=136019924,136021424;End_range=136025826,136027326;submitter_variant_call_id=YL_CN_LWK_752_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    137314459    137314459    3    137316440    137316440    520:copy_number_loss:1981    .    .    .    ID=2654891;Name=essv11158820;Alias=BI_GS_DEL1_B5_P0632_368_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3597902;Start_range=137314460,137314460;End_range=137316441,137316441;submitter_variant_call_id=BI_GS_DEL1_B5_P0632_368_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    137845385    137845385    3    137845385    137845385    521:mobile_element_insertion:0    .    .    .    ID=2656877;Name=essv11160345;Alias=SVA_umary_SVA_187_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597910;submitter_variant_call_id=SVA_umary_SVA_187_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    140524435    140524435    3    140524435    140524435    522:mobile_element_insertion:0    .    .    .    ID=2660519;Name=essv11161921;Alias=ALU_umary_ALU_2743_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3597965;submitter_variant_call_id=ALU_umary_ALU_2743_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    142460038    142460038    3    142460038    142460038    523:mobile_element_insertion:0    .    .    .    ID=2667285;Name=essv11165190;Alias=ALU_umary_ALU_2757_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598007;submitter_variant_call_id=ALU_umary_ALU_2757_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    143194859    143194859    3    143194859    143194859    524:mobile_element_insertion:0    .    .    .    ID=2669384;Name=essv11166014;Alias=ALU_umary_ALU_2760_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598019;submitter_variant_call_id=ALU_umary_ALU_2760_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    144888421    144888421    3    144888909    144888909    525:copy_number_loss:488    .    .    .    ID=2674250;Name=essv11169849;Alias=BI_GS_DEL1_B2_P0639_601_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598057;Start_range=144888421,144888423;End_range=144888909,144888911;submitter_variant_call_id=BI_GS_DEL1_B2_P0639_601_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    145069462    145069462    3    145069462    145069462    526:mobile_element_insertion:0    .    .    .    ID=2677218;Name=essv11170411;Alias=ALU_umary_ALU_2770_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598062;submitter_variant_call_id=ALU_umary_ALU_2770_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    146385227    146385227    3    146390408    146390408    527:copy_number_loss:5181    .    .    .    ID=2685609;Name=essv11175522;Alias=EM_DL_DEL66886_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598100;Start_range=146385078,146385378;End_range=146390259,146390559;submitter_variant_call_id=EM_DL_DEL66886_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    148797250    148797250    3    148797250    148797250    528:indel:0    .    .    .    ID=2695674;Name=essv11179320;Alias=PHASE3_V1_SV_417_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3598137;submitter_variant_call_id=PHASE3_V1_SV_417_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    151148554    151148554    3    151148554    151148554    529:mobile_element_insertion:0    .    .    .    ID=2707264;Name=essv11185338;Alias=L1_umary_LINE1_714_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598175;submitter_variant_call_id=L1_umary_LINE1_714_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    151748849    151748849    3    151748849    151748849    530:mobile_element_insertion:0    .    .    .    ID=2710520;Name=essv11186913;Alias=ALU_umary_ALU_2810_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598194;submitter_variant_call_id=ALU_umary_ALU_2810_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    152611311    152611311    3    152611311    152611311    531:mobile_element_insertion:0    .    .    .    ID=2714444;Name=essv11189247;Alias=ALU_umary_ALU_2817_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598218;submitter_variant_call_id=ALU_umary_ALU_2817_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    156092161    156092161    3    156093687    156093687    532:copy_number_loss:1526    .    .    .    ID=2722645;Name=essv11192892;Alias=UW_VH_10429_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598301;Start_range=156091691,156092162;End_range=156093688,156094143;submitter_variant_call_id=UW_VH_10429_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    156239881    156239881    3    156239881    156239881    533:mobile_element_insertion:0    .    .    .    ID=2724937;Name=essv11194430;Alias=ALU_umary_ALU_2839_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598304;submitter_variant_call_id=ALU_umary_ALU_2839_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    157962933    157962933    3    157962933    157962933    534:mobile_element_insertion:0    .    .    .    ID=2729438;Name=essv11195817;Alias=ALU_umary_ALU_2845_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598328;submitter_variant_call_id=ALU_umary_ALU_2845_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    158350718    158350718    3    158351909    158351909    535:copy_number_loss:1191    .    .    .    ID=2730937;Name=essv11197553;Alias=BI_GS_DEL1_B5_P0653_351_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598340;Start_range=158350719,158350720;End_range=158351910,158351911;submitter_variant_call_id=BI_GS_DEL1_B5_P0653_351_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    158572855    158572855    3    158572855    158572855    536:indel:0    .    .    .    ID=2733275;Name=essv11198272;Alias=PHASE3_V1_SV_421_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3598347;submitter_variant_call_id=PHASE3_V1_SV_421_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    159257017    159257017    3    159257690    159257690    537:copy_number_loss:673    .    .    .    ID=2735664;Name=essv11199213;Alias=BI_GS_DEL1_B5_P0654_313_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598364;Start_range=159257018,159257018;End_range=159257691,159257691;submitter_variant_call_id=BI_GS_DEL1_B5_P0654_313_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    159461334    159461334    3    159463462    159463462    538:copy_number_loss:2128    .    .    .    ID=2736497;Name=essv11199567;Alias=BI_GS_DEL1_B4_P0654_110_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598372;Start_range=159461330,159461340;End_range=159463458,159463468;submitter_variant_call_id=BI_GS_DEL1_B4_P0654_110_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    162448907    162448907    3    162449810    162449810    539:copy_number_loss:903    .    .    .    ID=2739492;Name=essv11200650;Alias=BI_GS_DEL1_B1_P0657_340_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598436;Start_range=162448901,162448915;End_range=162449804,162449818;submitter_variant_call_id=BI_GS_DEL1_B1_P0657_340_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    162512201    162512201    3    162525832    162525832    540:copy_number_loss:13631    .    .    .    ID=2741326;Name=essv11201908;Alias=BI_GS_CNV_3_162512202_162525833_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598438;Start_range=162511702,162512202;End_range=162525833,162526333;submitter_variant_call_id=BI_GS_CNV_3_162512202_162525833_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    162514470    162514470    3    162625646    162625646    541:copy_number_loss:111176    .    .    .    ID=2742733;Name=essv11203653;Alias=DUP_uwash_chr3_162514470_162625647_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598439;submitter_variant_call_id=DUP_uwash_chr3_162514470_162625647_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    162525833    162525833    3    162545192    162545192    542:copy_number_loss:19359    .    .    .    ID=2744895;Name=essv11205790;Alias=BI_GS_CNV_3_162525834_162545193_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598440;Start_range=162525334,162525834;End_range=162545193,162545693;submitter_variant_call_id=BI_GS_CNV_3_162525834_162545193_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    162558857    162558857    3    162601551    162601551    543:copy_number_loss:42694    .    .    .    ID=2746136;Name=essv11207668;Alias=BI_GS_CNV_3_162558858_162601552_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598441;Start_range=162558358,162558858;End_range=162601552,162602052;submitter_variant_call_id=BI_GS_CNV_3_162558858_162601552_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    162717257    162717257    3    162723562    162723562    544:copy_number_loss:6305    .    .    .    ID=2748131;Name=essv11210090;Alias=UW_VH_2706_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598444;Start_range=162716758,162717258;End_range=162723563,162723942;submitter_variant_call_id=UW_VH_2706_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    162764904    162764904    3    162769084    162769084    545:copy_number_loss:4180    .    .    .    ID=2750675;Name=essv11212309;Alias=UW_VH_2550_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598446;Start_range=162764390,162764905;End_range=162769085,162769692;submitter_variant_call_id=UW_VH_2550_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    165336825    165336825    3    165336825    165336825    546:mobile_element_insertion:0    .    .    .    ID=2766133;Name=essv11214204;Alias=ALU_umary_ALU_2883_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598509;submitter_variant_call_id=ALU_umary_ALU_2883_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    168738457    168738457    3    168738837    168738837    547:copy_number_loss:380    .    .    .    ID=2779458;Name=essv11220739;Alias=BI_GS_DEL1_B5_P0663_823_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598587;Start_range=168738458,168738458;End_range=168738838,168738838;submitter_variant_call_id=BI_GS_DEL1_B5_P0663_823_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    168885759    168885759    3    168885759    168885759    548:mobile_element_insertion:0    .    .    .    ID=2779923;Name=essv11221395;Alias=ALU_umary_ALU_2909_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598589;submitter_variant_call_id=ALU_umary_ALU_2909_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    171034691    171034691    3    171034691    171034691    549:indel:0    .    .    .    ID=2788256;Name=essv11225195;Alias=PHASE3_V1_SV_427_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3598646;submitter_variant_call_id=PHASE3_V1_SV_427_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    171626387    171626387    3    171626387    171626387    550:mobile_element_insertion:0    .    .    .    ID=2791564;Name=essv11226800;Alias=ALU_umary_ALU_2925_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598654;submitter_variant_call_id=ALU_umary_ALU_2925_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    174250910    174250910    3    174250910    174250910    551:mobile_element_insertion:0    .    .    .    ID=2799160;Name=essv11230727;Alias=ALU_umary_ALU_2945_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598730;submitter_variant_call_id=ALU_umary_ALU_2945_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    174410749    174410749    3    174410749    174410749    552:mobile_element_insertion:0    .    .    .    ID=2800767;Name=essv11231910;Alias=ALU_umary_ALU_2947_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598732;submitter_variant_call_id=ALU_umary_ALU_2947_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    176143033    176143033    3    176143033    176143033    553:mobile_element_insertion:0    .    .    .    ID=2808023;Name=essv11235506;Alias=ALU_umary_ALU_2958_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598767;submitter_variant_call_id=ALU_umary_ALU_2958_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    177294474    177294474    3    177297488    177297488    554:copy_number_loss:3014    .    .    .    ID=2814542;Name=essv11237738;Alias=UW_VH_19141_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598800;Start_range=177294269,177294475;End_range=177297489,177297805;submitter_variant_call_id=UW_VH_19141_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    177381335    177381335    3    177385446    177385446    555:copy_number_loss:4111    .    .    .    ID=2814861;Name=essv11238066;Alias=SI_BD_3759_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598804;Start_range=177381132,177381386;End_range=177385397,177385651;submitter_variant_call_id=SI_BD_3759_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    177896496    177896496    3    177896496    177896496    556:indel:0    .    .    .    ID=2816855;Name=essv11240013;Alias=PHASE3_V1_SV_433_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3598816;submitter_variant_call_id=PHASE3_V1_SV_433_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    178550123    178550123    3    178550896    178550896    557:copy_number_loss:773    .    .    .    ID=2824328;Name=essv11243117;Alias=SI_BD_3769_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598826;Start_range=178549817,178550182;End_range=178550842,178551204;submitter_variant_call_id=SI_BD_3769_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    179654341    179654341    3    179654807    179654807    558:copy_number_loss:466    .    .    .    ID=2829211;Name=essv11246010;Alias=BI_GS_DEL1_B5_P0674_770_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598851;Start_range=179654342,179654342;End_range=179654808,179654808;submitter_variant_call_id=BI_GS_DEL1_B5_P0674_770_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    179679817    179679817    3    179679817    179679817    559:indel:0    .    .    .    ID=2831094;Name=essv11247884;Alias=PHASE3_V1_SV_435_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3598853;submitter_variant_call_id=PHASE3_V1_SV_435_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    180917894    180917894    3    180918619    180918619    560:copy_number_loss:725    .    .    .    ID=2841785;Name=essv11251176;Alias=BI_GS_DEL1_B3_P0675_33_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598886;Start_range=180917831,180917960;End_range=180918556,180918685;submitter_variant_call_id=BI_GS_DEL1_B3_P0675_33_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    183876796    183876796    3    183877384    183877384    561:copy_number_loss:588    .    .    .    ID=2847260;Name=essv11254480;Alias=BI_GS_DEL1_B2_P0678_532_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598939;Start_range=183876797,183876797;End_range=183877385,183877385;submitter_variant_call_id=BI_GS_DEL1_B2_P0678_532_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    184125345    184125345    3    184125554    184125554    562:copy_number_loss:209    .    .    .    ID=2848540;Name=essv11256532;Alias=BI_GS_DEL1_B5_P0679_135_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3598943;Start_range=184125344,184125349;End_range=184125553,184125558;submitter_variant_call_id=BI_GS_DEL1_B5_P0679_135_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    186372140    186372140    3    186372140    186372140    563:mobile_element_insertion:0    .    .    .    ID=2856490;Name=essv11259438;Alias=L1_umary_LINE1_761_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3598991;submitter_variant_call_id=L1_umary_LINE1_761_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    187732877    187732877    3    187734848    187734848    564:copy_number_loss:1971    .    .    .    ID=2862351;Name=essv11261711;Alias=UW_VH_335_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599018;Start_range=187732452,187732878;End_range=187734849,187735259;submitter_variant_call_id=UW_VH_335_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    187835311    187835311    3    187835311    187835311    565:mobile_element_insertion:0    .    .    .    ID=2864354;Name=essv11263335;Alias=L1_umary_LINE1_762_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599022;submitter_variant_call_id=L1_umary_LINE1_762_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    188883225    188883225    3    188883225    188883225    566:mobile_element_insertion:0    .    .    .    ID=2870138;Name=essv11265801;Alias=ALU_umary_ALU_3010_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599049;submitter_variant_call_id=ALU_umary_ALU_3010_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    189737174    189737174    3    189740647    189740647    567:copy_number_loss:3473    .    .    .    ID=2874754;Name=essv11268163;Alias=YL_CN_CHS_825_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599063;Start_range=189736175,189737675;End_range=189740148,189741648;submitter_variant_call_id=YL_CN_CHS_825_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    189995602    189995602    3    189995602    189995602    568:indel:0    .    .    .    ID=2876001;Name=essv11268921;Alias=PHASE3_V1_SV_442_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599072;submitter_variant_call_id=PHASE3_V1_SV_442_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    190999463    190999463    3    190999463    190999463    569:mobile_element_insertion:0    .    .    .    ID=2879924;Name=essv11270557;Alias=ALU_umary_ALU_3022_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599100;submitter_variant_call_id=ALU_umary_ALU_3022_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    191141010    191141010    3    191141010    191141010    570:indel:0    .    .    .    ID=2881251;Name=essv11272114;Alias=PHASE3_V1_SV_445_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599106;submitter_variant_call_id=PHASE3_V1_SV_445_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    192875328    192875328    3    192885404    192885404    571:copy_number_loss:10076    .    .    .    ID=2895353;Name=essv11280895;Alias=EM_DL_DEL68191_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599177;Start_range=192875179,192875479;End_range=192885255,192885555;submitter_variant_call_id=EM_DL_DEL68191_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    193354184    193354184    3    193354184    193354184    572:mobile_element_insertion:0    .    .    .    ID=2904349;Name=essv11283179;Alias=L1_umary_LINE1_769_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599187;submitter_variant_call_id=L1_umary_LINE1_769_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    194398761    194398761    3    194400295    194400295    573:copy_number_loss:1534    .    .    .    ID=2908899;Name=essv11285695;Alias=UW_VH_25088_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599213;Start_range=194398386,194398762;End_range=194400296,194400766;submitter_variant_call_id=UW_VH_25088_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    194555603    194555603    3    194556261    194556261    574:copy_number_loss:658    .    .    .    ID=2910740;Name=essv11286854;Alias=BI_GS_DEL1_B5_P0689_593_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599218;Start_range=194555599,194555609;End_range=194556257,194556267;submitter_variant_call_id=BI_GS_DEL1_B5_P0689_593_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    194768523    194768523    3    194768523    194768523    575:mobile_element_insertion:0    .    .    .    ID=2914196;Name=essv11287683;Alias=ALU_umary_ALU_3048_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599231;submitter_variant_call_id=ALU_umary_ALU_3048_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    195198395    195198395    3    195222982    195222982    576:copy_number_loss:24587    .    .    .    ID=2916654;Name=essv11289521;Alias=YL_CN_MXL_692_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599238;Start_range=195197396,195198896;End_range=195222483,195223983;submitter_variant_call_id=YL_CN_MXL_692_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    195417834    195417834    3    195445775    195445775    577:copy_number_gain:27941    .    .    .    ID=2920106;Name=essv11291267;Alias=DUP_gs_CNV_3_195417835_195445776_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3599239;submitter_variant_call_id=DUP_gs_CNV_3_195417835_195445776_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    195505830    195505830    3    195507122    195507122    578:copy_number_loss:1292    .    .    .    ID=2927538;Name=essv11297880;Alias=SI_BD_3904_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599250;Start_range=195505781,195505881;End_range=195507073,195507173;submitter_variant_call_id=SI_BD_3904_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
3    195564884    195564884    3    195564884    195564884    579:indel:0    .    .    .    ID=2929123;Name=essv11300013;Alias=PHASE3_V1_SV_453_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599254;submitter_variant_call_id=PHASE3_V1_SV_453_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    195569205    195569205    3    195569922    195569922    580:copy_number_loss:717    .    .    .    ID=2932326;Name=essv11301813;Alias=BI_GS_DEL1_B3_P0690_30_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599255;Start_range=195569205,195569207;End_range=195569922,195569924;submitter_variant_call_id=BI_GS_DEL1_B3_P0690_30_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    195823763    195823763    3    195823763    195823763    581:indel:0    .    .    .    ID=2943135;Name=essv11305290;Alias=PHASE3_V1_SV_454_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599270;submitter_variant_call_id=PHASE3_V1_SV_454_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    196055918    196055918    3    196056882    196056882    582:copy_number_loss:964    .    .    .    ID=2951081;Name=essv11307866;Alias=SI_BD_3925_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599281;Start_range=196055649,196056080;End_range=196056753,196057153;submitter_variant_call_id=SI_BD_3925_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    196934562    196934562    3    196939252    196939252    583:copy_number_loss:4690    .    .    .    ID=2959231;Name=essv11309785;Alias=UW_VH_1407_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599303;Start_range=196934125,196934563;End_range=196939253,196939815;submitter_variant_call_id=UW_VH_1407_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
3    197574549    197574549    3    197574549    197574549    584:indel:0    .    .    .    ID=2961824;Name=essv11312167;Alias=PHASE3_V1_SV_458_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599325;submitter_variant_call_id=PHASE3_V1_SV_458_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    1301832    1301832    4    1301832    1301832    585:mobile_element_insertion:0    .    .    .    ID=2970903;Name=essv11315725;Alias=ALU_umary_ALU_3062_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599389;submitter_variant_call_id=ALU_umary_ALU_3062_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    2550338    2550338    4    2551280    2551280    586:copy_number_loss:942    .    .    .    ID=2974429;Name=essv11316938;Alias=BI_GS_DEL1_B1_P0696_415_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599406;Start_range=2550312,2550367;End_range=2551254,2551309;submitter_variant_call_id=BI_GS_DEL1_B1_P0696_415_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    4124333    4124333    4    4152936    4152936    587:copy_number_loss:28603    .    .    .    ID=2980521;Name=essv11319691;Alias=DUP_gs_CNV_4_4124334_4152937_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599450;submitter_variant_call_id=DUP_gs_CNV_4_4124334_4152937_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    4131076    4131076    4    4132206    4132206    588:copy_number_loss:1130    .    .    .    ID=2983650;Name=essv11321184;Alias=BI_GS_DEL1_B5_P0698_67_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599452;Start_range=4131029,4131126;End_range=4132159,4132256;submitter_variant_call_id=BI_GS_DEL1_B5_P0698_67_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    4139977    4139977    4    4149616    4149616    589:copy_number_loss:9639    .    .    .    ID=2985877;Name=essv11322687;Alias=BI_GS_DEL1_B1_P0698_67_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599453;Start_range=4139925,4140032;End_range=4149564,4149671;submitter_variant_call_id=BI_GS_DEL1_B1_P0698_67_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    6651591    6651591    4    6652911    6652911    590:copy_number_loss:1320    .    .    .    ID=2998880;Name=essv11329154;Alias=BI_GS_DEL1_B5_P0700_714_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599508;Start_range=6651592,6651592;End_range=6652912,6652912;submitter_variant_call_id=BI_GS_DEL1_B5_P0700_714_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    6894768    6894768    4    6895994    6895994    591:copy_number_loss:1226    .    .    .    ID=3001491;Name=essv11330357;Alias=BI_GS_DEL1_B4_P0700_232_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599512;Start_range=6894751,6894787;End_range=6895977,6896013;submitter_variant_call_id=BI_GS_DEL1_B4_P0700_232_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    6897350    6897350    4    6900400    6900400    592:copy_number_loss:3050    .    .    .    ID=3003875;Name=essv11331652;Alias=EM_DL_DEL68726_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599513;Start_range=6897201,6897501;End_range=6900251,6900551;submitter_variant_call_id=EM_DL_DEL68726_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    9157567    9157567    4    9214306    9214306    593:copy_number_loss:56739    .    .    .    ID=3024450;Name=essv11341448;Alias=YL_CN_PEL_803_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599566;Start_range=9156568,9158068;End_range=9213807,9215307;submitter_variant_call_id=YL_CN_PEL_803_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    9186955    9186955    4    9206734    9206734    594:copy_number_loss:19779    .    .    .    ID=3028999;Name=essv11343928;Alias=BI_GS_CNV_4_9186956_9206735_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599567;Start_range=9186456,9186956;End_range=9206735,9207235;submitter_variant_call_id=BI_GS_CNV_4_9186956_9206735_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    9457405    9457405    4    9481021    9481021    595:copy_number_loss:23616    .    .    .    ID=3034788;Name=essv11346610;Alias=DUP_gs_CNV_4_9457406_9481022_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599575;submitter_variant_call_id=DUP_gs_CNV_4_9457406_9481022_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    9576977    9576977    4    9577451    9577451    596:copy_number_loss:474    .    .    .    ID=3037726;Name=essv11348442;Alias=BI_GS_DEL1_B1_P0703_208_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599582;Start_range=9576978,9576978;End_range=9577452,9577452;submitter_variant_call_id=BI_GS_DEL1_B1_P0703_208_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    9603243    9603243    4    9603243    9603243    597:mobile_element_insertion:0    .    .    .    ID=3041254;Name=essv11350001;Alias=SVA_umary_SVA_205_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599585;submitter_variant_call_id=SVA_umary_SVA_205_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    9704848    9704848    4    9704848    9704848    598:mobile_element_insertion:0    .    .    .    ID=3044737;Name=essv11352088;Alias=SVA_umary_SVA_206_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599591;submitter_variant_call_id=SVA_umary_SVA_206_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    10211222    10211222    4    10234579    10234579    599:copy_number_loss:23357    .    .    .    ID=3049536;Name=essv11353985;Alias=SI_BD_4077_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599611;Start_range=10210899,10211280;End_range=10234530,10234904;submitter_variant_call_id=SI_BD_4077_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    10392396    10392396    4    10402098    10402098    600:copy_number_loss:9702    .    .    .    ID=3051142;Name=essv11355148;Alias=DUP_gs_CNV_4_10392397_10402099_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3599620;submitter_variant_call_id=DUP_gs_CNV_4_10392397_10402099_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    10722292    10722292    4    10722292    10722292    601:mobile_element_insertion:0    .    .    .    ID=3054160;Name=essv11356387;Alias=ALU_umary_ALU_3085_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599632;submitter_variant_call_id=ALU_umary_ALU_3085_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    18162688    18162688    4    18162688    18162688    602:mobile_element_insertion:0    .    .    .    ID=3066748;Name=essv11362452;Alias=L1_umary_LINE1_786_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599786;submitter_variant_call_id=L1_umary_LINE1_786_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    22043211    22043211    4    22043211    22043211    603:mobile_element_insertion:0    .    .    .    ID=3081115;Name=essv11369680;Alias=ALU_umary_ALU_3139_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599889;submitter_variant_call_id=ALU_umary_ALU_3139_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    25497596    25497596    4    25497596    25497596    604:indel:0    .    .    .    ID=3087494;Name=essv11372586;Alias=PHASE3_V1_SV_481_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3599965;submitter_variant_call_id=PHASE3_V1_SV_481_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    26438629    26438629    4    26438629    26438629    605:mobile_element_insertion:0    .    .    .    ID=3091633;Name=essv11375114;Alias=ALU_umary_ALU_3159_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3599986;submitter_variant_call_id=ALU_umary_ALU_3159_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    28320769    28320769    4    28320769    28320769    606:mobile_element_insertion:0    .    .    .    ID=3095627;Name=essv11376910;Alias=ALU_umary_ALU_3168_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600017;submitter_variant_call_id=ALU_umary_ALU_3168_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    28421592    28421592    4    28421941    28421941    607:copy_number_loss:349    .    .    .    ID=3099328;Name=essv11378483;Alias=BI_GS_DEL1_B4_P0722_85_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600020;Start_range=28421593,28421593;End_range=28421942,28421942;submitter_variant_call_id=BI_GS_DEL1_B4_P0722_85_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    33326863    33326863    4    33326863    33326863    608:indel:0    .    .    .    ID=3122604;Name=essv11389991;Alias=PHASE3_V1_SV_487_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600150;submitter_variant_call_id=PHASE3_V1_SV_487_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    34670637    34670637    4    34688423    34688423    609:copy_number_gain:17786    .    .    .    ID=3123889;Name=essv11390894;Alias=DUP_gs_CNV_4_34670638_34688424_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3600177;submitter_variant_call_id=DUP_gs_CNV_4_34670638_34688424_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    34779787    34779787    4    34780531    34780531    610:copy_number_loss:744    .    .    .    ID=3126635;Name=essv11391443;Alias=BI_GS_DEL1_B5_P0728_781_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600179;Start_range=34779717,34779859;End_range=34780461,34780603;submitter_variant_call_id=BI_GS_DEL1_B5_P0728_781_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    34779932    34779932    4    34828996    34828996    611:copy_number_loss:49064    .    .    .    ID=3127501;Name=essv11392186;Alias=BI_GS_DEL1_B1_P0728_582_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600180;Start_range=34779933,34779933;End_range=34828997,34828997;submitter_variant_call_id=BI_GS_DEL1_B1_P0728_582_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    34781316    34781316    4    34849885    34849885    612:copy_number_loss:68569    .    .    .    ID=3127843;Name=essv11392929;Alias=DUP_uwash_chr4_34781317_34849886_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600181;submitter_variant_call_id=DUP_uwash_chr4_34781317_34849886_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    39400103    39400103    4    39400103    39400103    613:indel:0    .    .    .    ID=3142474;Name=essv11399725;Alias=PHASE3_V1_SV_491_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600278;submitter_variant_call_id=PHASE3_V1_SV_491_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    39410558    39410558    4    39410558    39410558    614:mobile_element_insertion:0    .    .    .    ID=3144064;Name=essv11400971;Alias=ALU_umary_ALU_3236_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600280;submitter_variant_call_id=ALU_umary_ALU_3236_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    40024927    40024927    4    40026277    40026277    615:copy_number_loss:1350    .    .    .    ID=3148437;Name=essv11402774;Alias=UW_VH_359_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600297;Start_range=40024320,40024928;End_range=40026278,40026860;submitter_variant_call_id=UW_VH_359_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    41445194    41445194    4    41445194    41445194    616:indel:0    .    .    .    ID=3158334;Name=essv11407592;Alias=PHASE3_V1_SV_492_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600334;submitter_variant_call_id=PHASE3_V1_SV_492_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    42088055    42088055    4    42088055    42088055    617:mobile_element_insertion:0    .    .    .    ID=3162242;Name=essv11410243;Alias=ALU_umary_ALU_3251_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600347;submitter_variant_call_id=ALU_umary_ALU_3251_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    43399985    43399985    4    43399985    43399985    618:mobile_element_insertion:0    .    .    .    ID=3171210;Name=essv11414538;Alias=ALU_umary_ALU_3259_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600374;submitter_variant_call_id=ALU_umary_ALU_3259_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    43931498    43931498    4    43931837    43931837    619:copy_number_loss:339    .    .    .    ID=3179020;Name=essv11418347;Alias=BI_GS_DEL1_B2_P0737_584_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600382;Start_range=43931499,43931499;End_range=43931838,43931838;submitter_variant_call_id=BI_GS_DEL1_B2_P0737_584_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    43947484    43947484    4    43947484    43947484    620:indel:0    .    .    .    ID=3184052;Name=essv11420491;Alias=PHASE3_V1_SV_495_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600385;submitter_variant_call_id=PHASE3_V1_SV_495_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    47007788    47007788    4    47007788    47007788    621:mobile_element_insertion:0    .    .    .    ID=3196105;Name=essv11426457;Alias=L1_umary_LINE1_831_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600441;submitter_variant_call_id=L1_umary_LINE1_831_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    48094570    48094570    4    48094570    48094570    622:indel:0    .    .    .    ID=3200528;Name=essv11428821;Alias=PHASE3_V1_SV_502_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600459;submitter_variant_call_id=PHASE3_V1_SV_502_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    53851851    53851851    4    53851851    53851851    623:mobile_element_insertion:0    .    .    .    ID=3213912;Name=essv11433378;Alias=ALU_umary_ALU_3284_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600514;submitter_variant_call_id=ALU_umary_ALU_3284_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    54073786    54073786    4    54073786    54073786    624:indel:0    .    .    .    ID=3216999;Name=essv11436455;Alias=PHASE3_V1_SV_504_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600520;submitter_variant_call_id=PHASE3_V1_SV_504_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    56371961    56371961    4    56371961    56371961    625:mobile_element_insertion:0    .    .    .    ID=3222797;Name=essv11439814;Alias=ALU_umary_ALU_3295_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600553;submitter_variant_call_id=ALU_umary_ALU_3295_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    57497066    57497066    4    57497066    57497066    626:mobile_element_insertion:0    .    .    .    ID=3227506;Name=essv11441434;Alias=L1_umary_LINE1_843_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600580;submitter_variant_call_id=L1_umary_LINE1_843_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    57742563    57742563    4    57742563    57742563    627:indel:0    .    .    .    ID=3229194;Name=essv11442837;Alias=PHASE3_V1_SV_506_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600593;submitter_variant_call_id=PHASE3_V1_SV_506_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    61055998    61055998    4    61055998    61055998    628:mobile_element_insertion:0    .    .    .    ID=3241675;Name=essv11447483;Alias=ALU_umary_ALU_3313_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600663;submitter_variant_call_id=ALU_umary_ALU_3313_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    61330101    61330101    4    61333187    61333187    629:copy_number_loss:3086    .    .    .    ID=3246669;Name=essv11448969;Alias=BI_GS_DEL1_B5_P0755_327_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600669;Start_range=61330102,61330102;End_range=61333188,61333188;submitter_variant_call_id=BI_GS_DEL1_B5_P0755_327_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    61825108    61825108    4    61825108    61825108    630:mobile_element_insertion:0    .    .    .    ID=3248623;Name=essv11450976;Alias=ALU_umary_ALU_3316_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600675;submitter_variant_call_id=ALU_umary_ALU_3316_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    61939188    61939188    4    61942242    61942242    631:copy_number_loss:3054    .    .    .    ID=3250092;Name=essv11452497;Alias=BI_GS_DEL1_B2_P0755_558_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600678;Start_range=61939189,61939189;End_range=61942243,61942243;submitter_variant_call_id=BI_GS_DEL1_B2_P0755_558_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    63552087    63552087    4    63552087    63552087    632:indel:0    .    .    .    ID=3261193;Name=essv11457510;Alias=PHASE3_V1_SV_511_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600712;submitter_variant_call_id=PHASE3_V1_SV_511_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    64563185    64563185    4    64563185    64563185    633:mobile_element_insertion:0    .    .    .    ID=3269478;Name=essv11461277;Alias=ALU_umary_ALU_3331_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600742;submitter_variant_call_id=ALU_umary_ALU_3331_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    64726917    64726917    4    64726917    64726917    634:mobile_element_insertion:0    .    .    .    ID=3271047;Name=essv11462460;Alias=ALU_umary_ALU_3334_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600748;submitter_variant_call_id=ALU_umary_ALU_3334_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    65216745    65216745    4    65216745    65216745    635:mobile_element_insertion:0    .    .    .    ID=3276379;Name=essv11464754;Alias=ALU_umary_ALU_3340_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600765;submitter_variant_call_id=ALU_umary_ALU_3340_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    65719066    65719066    4    65719553    65719553    636:copy_number_loss:487    .    .    .    ID=3278405;Name=essv11466237;Alias=UW_VH_2364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600772;Start_range=65718743,65719067;End_range=65719554,65720001;submitter_variant_call_id=UW_VH_2364_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    65855611    65855611    4    65855611    65855611    637:indel:0    .    .    .    ID=3280551;Name=essv11468632;Alias=PHASE3_V1_SV_515_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600776;submitter_variant_call_id=PHASE3_V1_SV_515_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    67106615    67106615    4    67106615    67106615    638:mobile_element_insertion:0    .    .    .    ID=3291959;Name=essv11471895;Alias=ALU_umary_ALU_3354_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600812;submitter_variant_call_id=ALU_umary_ALU_3354_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    67122070    67122070    4    67123488    67123488    639:copy_number_loss:1418    .    .    .    ID=3293010;Name=essv11473392;Alias=BI_GS_DEL1_B1_P0761_98_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600815;Start_range=67122071,67122071;End_range=67123489,67123489;submitter_variant_call_id=BI_GS_DEL1_B1_P0761_98_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    67963891    67963891    4    67963891    67963891    640:mobile_element_insertion:0    .    .    .    ID=3295146;Name=essv11475951;Alias=ALU_umary_ALU_3362_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600838;submitter_variant_call_id=ALU_umary_ALU_3362_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    68873177    68873177    4    68873177    68873177    641:indel:0    .    .    .    ID=3307920;Name=essv11478171;Alias=PHASE3_V1_SV_518_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3600859;submitter_variant_call_id=PHASE3_V1_SV_518_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    69373746    69373746    4    69423166    69423166    642:copy_number_loss:49420    .    .    .    ID=3314757;Name=essv11481377;Alias=BI_GS_CNV_4_69373747_69423167_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600873;Start_range=69373247,69373747;End_range=69423167,69423667;submitter_variant_call_id=BI_GS_CNV_4_69373747_69423167_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    69375590    69375590    4    69491542    69491542    643:copy_number_loss:115952    .    .    .    ID=3315792;Name=essv11483050;Alias=YL_CN_ACB_1105_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600874;Start_range=69374591,69376091;End_range=69491043,69492543;submitter_variant_call_id=YL_CN_ACB_1105_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    69426438    69426438    4    69454552    69454552    644:copy_number_loss:28114    .    .    .    ID=3318399;Name=essv11484721;Alias=BI_GS_CNV_4_69426439_69454553_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600875;Start_range=69425939,69426439;End_range=69454553,69455053;submitter_variant_call_id=BI_GS_CNV_4_69426439_69454553_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    69597935    69597935    4    69598287    69598287    645:copy_number_loss:352    .    .    .    ID=3320672;Name=essv11486363;Alias=BI_GS_DEL1_B4_P0763_96_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600879;Start_range=69597936,69597936;End_range=69598288,69598288;submitter_variant_call_id=BI_GS_DEL1_B4_P0763_96_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    70122980    70122980    4    70231745    70231745    646:copy_number_loss:108765    .    .    .    ID=3325308;Name=essv11488266;Alias=YL_CN_CHB_998_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600896;Start_range=70121981,70123481;End_range=70231246,70232746;submitter_variant_call_id=YL_CN_CHB_998_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    70129984    70129984    4    70204225    70204225    647:copy_number_loss:74241    .    .    .    ID=3326160;Name=essv11489243;Alias=DUP_gs_CNV_4_70129985_70204226_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600897;submitter_variant_call_id=DUP_gs_CNV_4_70129985_70204226_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    72970726    72970726    4    72970726    72970726    648:mobile_element_insertion:0    .    .    .    ID=3340086;Name=essv11497112;Alias=ALU_umary_ALU_3393_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600966;submitter_variant_call_id=ALU_umary_ALU_3393_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    73831244    73831244    4    73831818    73831818    649:copy_number_loss:574    .    .    .    ID=3344257;Name=essv11499069;Alias=BI_GS_DEL1_B2_P0767_592_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3600986;Start_range=73831245,73831245;End_range=73831819,73831819;submitter_variant_call_id=BI_GS_DEL1_B2_P0767_592_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    73889676    73889676    4    73889676    73889676    650:mobile_element_insertion:0    .    .    .    ID=3345383;Name=essv11500592;Alias=ALU_umary_ALU_3400_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3600987;submitter_variant_call_id=ALU_umary_ALU_3400_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    75496154    75496154    4    75496154    75496154    651:indel:0    .    .    .    ID=3354213;Name=essv11504684;Alias=PHASE3_V1_SV_521_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3601018;submitter_variant_call_id=PHASE3_V1_SV_521_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    76993823    76993823    4    76993823    76993823    652:mobile_element_insertion:0    .    .    .    ID=3359248;Name=essv11507352;Alias=ALU_umary_ALU_3412_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601043;submitter_variant_call_id=ALU_umary_ALU_3412_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    79289448    79289448    4    79289448    79289448    653:mobile_element_insertion:0    .    .    .    ID=3370918;Name=essv11512570;Alias=ALU_umary_ALU_3430_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601100;submitter_variant_call_id=ALU_umary_ALU_3430_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    79322981    79322981    4    79322981    79322981    654:mobile_element_insertion:0    .    .    .    ID=3371945;Name=essv11513373;Alias=ALU_umary_ALU_3431_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601102;submitter_variant_call_id=ALU_umary_ALU_3431_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    79359179    79359179    4    79359179    79359179    655:mobile_element_insertion:0    .    .    .    ID=3372586;Name=essv11514084;Alias=ALU_umary_ALU_3432_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601104;submitter_variant_call_id=ALU_umary_ALU_3432_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    80768544    80768544    4    80768544    80768544    656:mobile_element_insertion:0    .    .    .    ID=3377008;Name=essv11516307;Alias=L1_umary_LINE1_878_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601127;submitter_variant_call_id=L1_umary_LINE1_878_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    83215375    83215375    4    83215375    83215375    657:indel:0    .    .    .    ID=3384803;Name=essv11519517;Alias=PHASE3_V1_SV_527_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3601171;submitter_variant_call_id=PHASE3_V1_SV_527_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    83340695    83340695    4    83340695    83340695    658:mobile_element_insertion:0    .    .    .    ID=3385513;Name=essv11520426;Alias=ALU_umary_ALU_3457_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601177;submitter_variant_call_id=ALU_umary_ALU_3457_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    86470381    86470381    4    86470381    86470381    659:mobile_element_insertion:0    .    .    .    ID=3395093;Name=essv11524580;Alias=ALU_umary_ALU_3474_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601242;submitter_variant_call_id=ALU_umary_ALU_3474_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    86584501    86584501    4    86584501    86584501    660:mobile_element_insertion:0    .    .    .    ID=3397143;Name=essv11526007;Alias=ALU_umary_ALU_3475_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601246;submitter_variant_call_id=ALU_umary_ALU_3475_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    86607955    86607955    4    86607955    86607955    661:mobile_element_insertion:0    .    .    .    ID=3397635;Name=essv11526432;Alias=L1_umary_LINE1_885_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601247;submitter_variant_call_id=L1_umary_LINE1_885_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    86976374    86976374    4    86979956    86979956    662:copy_number_loss:3582    .    .    .    ID=3398231;Name=essv11526836;Alias=BI_GS_DEL1_B4_P0780_228_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601253;Start_range=86976375,86976376;End_range=86979957,86979958;submitter_variant_call_id=BI_GS_DEL1_B4_P0780_228_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    88634295    88634295    4    88634295    88634295    663:mobile_element_insertion:0    .    .    .    ID=3400537;Name=essv11528046;Alias=ALU_umary_ALU_3481_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601282;submitter_variant_call_id=ALU_umary_ALU_3481_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    89833365    89833365    4    89833365    89833365    664:indel:0    .    .    .    ID=3403469;Name=essv11528903;Alias=PHASE3_V1_SV_533_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3601313;submitter_variant_call_id=PHASE3_V1_SV_533_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    89963260    89963260    4    89963260    89963260    665:mobile_element_insertion:0    .    .    .    ID=3404179;Name=essv11529371;Alias=ALU_umary_ALU_3486_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601314;submitter_variant_call_id=ALU_umary_ALU_3486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    91569664    91569664    4    91569664    91569664    666:indel:0    .    .    .    ID=3412059;Name=essv11532058;Alias=PHASE3_V1_SV_537_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3601349;submitter_variant_call_id=PHASE3_V1_SV_537_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    91931555    91931555    4    91935837    91935837    667:copy_number_loss:4282    .    .    .    ID=3413649;Name=essv11533336;Alias=BI_GS_DEL1_B2_P0785_570_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601356;Start_range=91931556,91931556;End_range=91935838,91935838;submitter_variant_call_id=BI_GS_DEL1_B2_P0785_570_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    91931665    91931665    4    91933537    91933537    668:copy_number_loss:1872    .    .    .    ID=3415527;Name=essv11534411;Alias=SI_BD_4573_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601357;Start_range=91931547,91931716;End_range=91933488,91933657;submitter_variant_call_id=SI_BD_4573_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    91933848    91933848    4    91936096    91936096    669:copy_number_loss:2248    .    .    .    ID=3415900;Name=essv11535486;Alias=UW_VH_11348_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601358;Start_range=91931487,91933849;End_range=91936097,91936438;submitter_variant_call_id=UW_VH_11348_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    100376806    100376806    4    100376806    100376806    670:mobile_element_insertion:0    .    .    .    ID=3431145;Name=essv11542943;Alias=ALU_umary_ALU_3544_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601555;submitter_variant_call_id=ALU_umary_ALU_3544_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    103343755    103343755    4    103343755    103343755    671:mobile_element_insertion:0    .    .    .    ID=3441487;Name=essv11547495;Alias=L1_umary_LINE1_913_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601617;submitter_variant_call_id=L1_umary_LINE1_913_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    104214685    104214685    4    104214685    104214685    672:mobile_element_insertion:0    .    .    .    ID=3445871;Name=essv11548658;Alias=L1_umary_LINE1_915_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601629;submitter_variant_call_id=L1_umary_LINE1_915_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    104744616    104744616    4    104744616    104744616    673:mobile_element_insertion:0    .    .    .    ID=3447446;Name=essv11549593;Alias=ALU_umary_ALU_3567_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601638;submitter_variant_call_id=ALU_umary_ALU_3567_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    104894031    104894031    4    104894689    104894689    674:copy_number_loss:658    .    .    .    ID=3448289;Name=essv11551444;Alias=SI_BD_4644_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601640;Start_range=104893764,104894097;End_range=104894640,104894958;submitter_variant_call_id=SI_BD_4644_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    107437717    107437717    4    107438503    107438503    675:copy_number_loss:786    .    .    .    ID=3459256;Name=essv11557014;Alias=BI_GS_DEL1_B1_P0801_364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601689;Start_range=107437718,107437718;End_range=107438504,107438504;submitter_variant_call_id=BI_GS_DEL1_B1_P0801_364_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    107604297    107604297    4    107609291    107609291    676:copy_number_loss:4994    .    .    .    ID=3460701;Name=essv11557550;Alias=UW_VH_3347_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601692;Start_range=107603924,107604298;End_range=107609292,107609626;submitter_variant_call_id=UW_VH_3347_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    110934969    110934969    4    110934969    110934969    677:mobile_element_insertion:0    .    .    .    ID=3468726;Name=essv11561538;Alias=ALU_umary_ALU_3595_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601753;submitter_variant_call_id=ALU_umary_ALU_3595_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    115549929    115549929    4    115549929    115549929    678:mobile_element_insertion:0    .    .    .    ID=3496572;Name=essv11574234;Alias=ALU_umary_ALU_3613_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601838;submitter_variant_call_id=ALU_umary_ALU_3613_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    115928725    115928725    4    115931879    115931879    679:copy_number_loss:3154    .    .    .    ID=3498476;Name=essv11576100;Alias=BI_GS_DEL1_B1_P0809_782_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601846;Start_range=115928726,115928726;End_range=115931880,115931880;submitter_variant_call_id=BI_GS_DEL1_B1_P0809_782_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    116166770    116166770    4    116177283    116177283    680:copy_number_loss:10513    .    .    .    ID=3499196;Name=essv11576769;Alias=YL_CN_BEB_864_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601853;Start_range=116165771,116167271;End_range=116176784,116178284;submitter_variant_call_id=YL_CN_BEB_864_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    117350582    117350582    4    117350582    117350582    681:mobile_element_insertion:0    .    .    .    ID=3501204;Name=essv11577448;Alias=ALU_umary_ALU_3626_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601888;submitter_variant_call_id=ALU_umary_ALU_3626_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    117367803    117367803    4    117368497    117368497    682:copy_number_loss:694    .    .    .    ID=3501674;Name=essv11577892;Alias=BI_GS_DEL1_B5_P0811_346_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3601890;Start_range=117367804,117367805;End_range=117368498,117368499;submitter_variant_call_id=BI_GS_DEL1_B5_P0811_346_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    119411449    119411449    4    119504747    119504747    683:copy_number_gain:93298    .    .    .    ID=3511924;Name=essv11582125;Alias=DUP_uwash_chr4_119411450_119504748_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3601950;submitter_variant_call_id=DUP_uwash_chr4_119411450_119504748_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    119774735    119774735    4    119774735    119774735    684:mobile_element_insertion:0    .    .    .    ID=3515436;Name=essv11583129;Alias=ALU_umary_ALU_3640_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601955;submitter_variant_call_id=ALU_umary_ALU_3640_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    120720095    120720095    4    120720095    120720095    685:mobile_element_insertion:0    .    .    .    ID=3521823;Name=essv11587096;Alias=ALU_umary_ALU_3644_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3601979;submitter_variant_call_id=ALU_umary_ALU_3644_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    130066188    130066188    4    130068434    130068434    686:copy_number_loss:2246    .    .    .    ID=3548398;Name=essv11599483;Alias=UW_VH_3876_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602178;Start_range=130065944,130066189;End_range=130068435,130068529;submitter_variant_call_id=UW_VH_3876_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    132181661    132181661    4    132181661    132181661    687:mobile_element_insertion:0    .    .    .    ID=3555254;Name=essv11604081;Alias=L1_umary_LINE1_965_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602236;submitter_variant_call_id=L1_umary_LINE1_965_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    133117841    133117841    4    133117841    133117841    688:mobile_element_insertion:0    .    .    .    ID=3561050;Name=essv11605547;Alias=ALU_umary_ALU_3712_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602259;submitter_variant_call_id=ALU_umary_ALU_3712_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    133180784    133180784    4    133182978    133182978    689:copy_number_loss:2194    .    .    .    ID=3562280;Name=essv11606868;Alias=UW_VH_2928_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602260;Start_range=133180337,133180785;End_range=133182979,133183463;submitter_variant_call_id=UW_VH_2928_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    133445428    133445428    4    133445696    133445696    690:copy_number_loss:268    .    .    .    ID=3566330;Name=essv11608633;Alias=BI_GS_DEL1_B4_P0827_94_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602264;Start_range=133445429,133445429;End_range=133445697,133445697;submitter_variant_call_id=BI_GS_DEL1_B4_P0827_94_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    134132403    134132403    4    134133156    134133156    691:copy_number_loss:753    .    .    .    ID=3571374;Name=essv11611415;Alias=EM_DL_DEL10808383_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602278;Start_range=134132254,134132554;End_range=134133007,134133307;submitter_variant_call_id=EM_DL_DEL10808383_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    134922358    134922358    4    134922358    134922358    692:mobile_element_insertion:0    .    .    .    ID=3580253;Name=essv11614453;Alias=ALU_umary_ALU_3724_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602300;submitter_variant_call_id=ALU_umary_ALU_3724_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    135130280    135130280    4    135130280    135130280    693:mobile_element_insertion:0    .    .    .    ID=3580646;Name=essv11614853;Alias=ALU_umary_ALU_3726_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602305;submitter_variant_call_id=ALU_umary_ALU_3726_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    135590010    135590010    4    135590010    135590010    694:indel:0    .    .    .    ID=3585229;Name=essv11618916;Alias=PHASE3_V1_SV_568_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3602313;submitter_variant_call_id=PHASE3_V1_SV_568_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    138177333    138177333    4    138177333    138177333    695:mobile_element_insertion:0    .    .    .    ID=3602094;Name=essv11625105;Alias=L1_umary_LINE1_971_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602387;submitter_variant_call_id=L1_umary_LINE1_971_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    138189292    138189292    4    138189292    138189292    696:mobile_element_insertion:0    .    .    .    ID=3603427;Name=essv11625663;Alias=ALU_umary_ALU_3746_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602389;submitter_variant_call_id=ALU_umary_ALU_3746_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    138243864    138243864    4    138243864    138243864    697:indel:0    .    .    .    ID=3603631;Name=essv11627277;Alias=PHASE3_V1_SV_570_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3602391;submitter_variant_call_id=PHASE3_V1_SV_570_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    143258318    143258318    4    143258318    143258318    698:mobile_element_insertion:0    .    .    .    ID=3621212;Name=essv11637176;Alias=ALU_umary_ALU_3771_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602483;submitter_variant_call_id=ALU_umary_ALU_3771_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    145316453    145316453    4    145319899    145319899    699:copy_number_loss:3446    .    .    .    ID=3626540;Name=essv11639433;Alias=UW_VH_425_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602540;Start_range=145315971,145316454;End_range=145319900,145320352;submitter_variant_call_id=UW_VH_425_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    145395307    145395307    4    145395307    145395307    700:mobile_element_insertion:0    .    .    .    ID=3628225;Name=essv11640737;Alias=ALU_umary_ALU_3782_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602544;submitter_variant_call_id=ALU_umary_ALU_3782_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    147225295    147225295    4    147225295    147225295    701:mobile_element_insertion:0    .    .    .    ID=3639198;Name=essv11645061;Alias=L1_umary_LINE1_985_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602575;submitter_variant_call_id=L1_umary_LINE1_985_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    150245270    150245270    4    150245270    150245270    702:mobile_element_insertion:0    .    .    .    ID=3648479;Name=essv11649837;Alias=ALU_umary_ALU_3811_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602635;submitter_variant_call_id=ALU_umary_ALU_3811_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    150279996    150279996    4    150279996    150279996    703:indel:0    .    .    .    ID=3649162;Name=essv11650685;Alias=PHASE3_V1_SV_576_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3602636;submitter_variant_call_id=PHASE3_V1_SV_576_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    151293913    151293913    4    151293913    151293913    704:mobile_element_insertion:0    .    .    .    ID=3652675;Name=essv11652695;Alias=ALU_umary_ALU_3816_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602655;submitter_variant_call_id=ALU_umary_ALU_3816_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    155110633    155110633    4    155110633    155110633    705:indel:0    .    .    .    ID=3664566;Name=essv11658320;Alias=PHASE3_V1_SV_580_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3602739;submitter_variant_call_id=PHASE3_V1_SV_580_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    159550096    159550096    4    159550096    159550096    706:mobile_element_insertion:0    .    .    .    ID=3670398;Name=essv11661325;Alias=ALU_umary_ALU_3854_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602836;submitter_variant_call_id=ALU_umary_ALU_3854_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    161026792    161026792    4    161080533    161080533    707:copy_number_loss:53741    .    .    .    ID=3674772;Name=essv11662809;Alias=DUP_uwash_chr4_161026792_161080534_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602861;submitter_variant_call_id=DUP_uwash_chr4_161026792_161080534_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    161045731    161045731    4    161073648    161073648    708:copy_number_loss:27917    .    .    .    ID=3674792;Name=essv11662840;Alias=BI_GS_CNV_4_161045732_161073649_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602862;Start_range=161045232,161045732;End_range=161073649,161074149;submitter_variant_call_id=BI_GS_CNV_4_161045732_161073649_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    161879010    161879010    4    161884781    161884781    709:copy_number_loss:5771    .    .    .    ID=3683964;Name=essv11664019;Alias=DUP_gs_CNV_4_161879011_161884782_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602886;submitter_variant_call_id=DUP_gs_CNV_4_161879011_161884782_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    162053239    162053239    4    162053668    162053668    710:copy_number_loss:429    .    .    .    ID=3685715;Name=essv11665754;Alias=UW_VH_1748_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602895;Start_range=162052968,162053240;End_range=162053669,162053955;submitter_variant_call_id=UW_VH_1748_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    162053281    162053281    4    162053550    162053550    711:copy_number_loss:269    .    .    .    ID=3686680;Name=essv11667295;Alias=BI_GS_DEL1_B1_P0856_34_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602896;Start_range=162053282,162053282;End_range=162053551,162053551;submitter_variant_call_id=BI_GS_DEL1_B1_P0856_34_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    162776133    162776133    4    162776133    162776133    712:indel:0    .    .    .    ID=3693537;Name=essv11671694;Alias=PHASE3_V1_SV_584_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3602919;submitter_variant_call_id=PHASE3_V1_SV_584_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    163394003    163394003    4    163396423    163396423    713:copy_number_loss:2420    .    .    .    ID=3695528;Name=essv11673805;Alias=BI_GS_DEL1_B1_P0857_291_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3602938;Start_range=163394004,163394004;End_range=163396424,163396424;submitter_variant_call_id=BI_GS_DEL1_B1_P0857_291_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    164802843    164802843    4    164802843    164802843    714:mobile_element_insertion:0    .    .    .    ID=3701629;Name=essv11676037;Alias=ALU_umary_ALU_3888_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3602973;submitter_variant_call_id=ALU_umary_ALU_3888_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    166002563    166002563    4    166005041    166005041    715:copy_number_loss:2478    .    .    .    ID=3708989;Name=essv11679825;Alias=SI_BD_4967_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603015;Start_range=166002271,166002651;End_range=166004992,166005335;submitter_variant_call_id=SI_BD_4967_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    167004316    167004316    4    167004916    167004916    716:copy_number_loss:600    .    .    .    ID=3715443;Name=essv11682081;Alias=BI_GS_DEL1_B1_P0861_4_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603031;Start_range=167004317,167004317;End_range=167004917,167004917;submitter_variant_call_id=BI_GS_DEL1_B1_P0861_4_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    167338793    167338793    4    167338793    167338793    717:mobile_element_insertion:0    .    .    .    ID=3718205;Name=essv11683927;Alias=ALU_umary_ALU_3910_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603045;submitter_variant_call_id=ALU_umary_ALU_3910_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    167892468    167892468    4    167893611    167893611    718:copy_number_loss:1143    .    .    .    ID=3719889;Name=essv11685505;Alias=BI_GS_DEL1_B5_P0861_917_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603057;Start_range=167892430,167892509;End_range=167893573,167893652;submitter_variant_call_id=BI_GS_DEL1_B5_P0861_917_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    169756813    169756813    4    169756813    169756813    719:mobile_element_insertion:0    .    .    .    ID=3726201;Name=essv11687906;Alias=ALU_umary_ALU_3925_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603110;submitter_variant_call_id=ALU_umary_ALU_3925_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    170278461    170278461    4    170278878    170278878    720:copy_number_loss:417    .    .    .    ID=3729558;Name=essv11689256;Alias=BI_GS_DEL1_B5_P0864_357_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603116;Start_range=170278462,170278462;End_range=170278879,170278879;submitter_variant_call_id=BI_GS_DEL1_B5_P0864_357_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    170834596    170834596    4    170834596    170834596    721:mobile_element_insertion:0    .    .    .    ID=3734652;Name=essv11691616;Alias=ALU_umary_ALU_3928_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603131;submitter_variant_call_id=ALU_umary_ALU_3928_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    171276547    171276547    4    171277691    171277691    722:copy_number_loss:1144    .    .    .    ID=3738047;Name=essv11693436;Alias=SI_BD_5000_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603141;Start_range=171276415,171276673;End_range=171277642,171277825;submitter_variant_call_id=SI_BD_5000_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    171428791    171428791    4    171428791    171428791    723:mobile_element_insertion:0    .    .    .    ID=3739428;Name=essv11694547;Alias=ALU_umary_ALU_3931_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603144;submitter_variant_call_id=ALU_umary_ALU_3931_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    171969683    171969683    4    171969683    171969683    724:indel:0    .    .    .    ID=3742952;Name=essv11696139;Alias=PHASE3_V1_SV_591_A2_NA12878;variant_call_so_id=SO:1000032;parent=esv3603158;submitter_variant_call_id=PHASE3_V1_SV_591_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    172288853    172288853    4    172288853    172288853    725:mobile_element_insertion:0    .    .    .    ID=3747744;Name=essv11697087;Alias=ALU_umary_ALU_3936_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603164;submitter_variant_call_id=ALU_umary_ALU_3936_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    172988630    172988630    4    172992932    172992932    726:copy_number_loss:4302    .    .    .    ID=3753936;Name=essv11700855;Alias=UW_VH_25120_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603188;Start_range=172988292,172988631;End_range=172992933,172993276;submitter_variant_call_id=UW_VH_25120_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    173176433    173176433    4    173176433    173176433    727:indel:0    .    .    .    ID=3756476;Name=essv11702213;Alias=PHASE3_V1_SV_592_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603190;submitter_variant_call_id=PHASE3_V1_SV_592_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    173425033    173425033    4    173433520    173433520    728:copy_number_loss:8487    .    .    .    ID=3758860;Name=essv11704229;Alias=BI_GS_DEL1_B1_P0867_301_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603194;Start_range=173425034,173425034;End_range=173433521,173433521;submitter_variant_call_id=BI_GS_DEL1_B1_P0867_301_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    174044227    174044227    4    174044227    174044227    729:mobile_element_insertion:0    .    .    .    ID=3763281;Name=essv11705867;Alias=ALU_umary_ALU_3943_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603207;submitter_variant_call_id=ALU_umary_ALU_3943_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    174786707    174786707    4    174786707    174786707    730:mobile_element_insertion:0    .    .    .    ID=3769918;Name=essv11708972;Alias=ALU_umary_ALU_3946_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603218;submitter_variant_call_id=ALU_umary_ALU_3946_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    175211587    175211587    4    175211587    175211587    731:mobile_element_insertion:0    .    .    .    ID=3774555;Name=essv11709979;Alias=ALU_umary_ALU_3952_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603226;submitter_variant_call_id=ALU_umary_ALU_3952_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    175970138    175970138    4    175970138    175970138    732:indel:0    .    .    .    ID=3780580;Name=essv11714525;Alias=PHASE3_V1_SV_594_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603245;submitter_variant_call_id=PHASE3_V1_SV_594_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    179198328    179198328    4    179198328    179198328    733:mobile_element_insertion:0    .    .    .    ID=3793561;Name=essv11720815;Alias=ALU_umary_ALU_3969_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603324;submitter_variant_call_id=ALU_umary_ALU_3969_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    179444737    179444737    4    179444737    179444737    734:mobile_element_insertion:0    .    .    .    ID=3798476;Name=essv11722908;Alias=ALU_umary_ALU_3974_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603334;submitter_variant_call_id=ALU_umary_ALU_3974_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    180063821    180063821    4    180064150    180064150    735:copy_number_loss:329    .    .    .    ID=3801030;Name=essv11724892;Alias=BI_GS_DEL1_B4_P0874_17_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603348;Start_range=180063822,180063822;End_range=180064151,180064151;submitter_variant_call_id=BI_GS_DEL1_B4_P0874_17_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    180256971    180256971    4    180256971    180256971    736:mobile_element_insertion:0    .    .    .    ID=3802144;Name=essv11726765;Alias=ALU_umary_ALU_3976_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603350;submitter_variant_call_id=ALU_umary_ALU_3976_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    180698482    180698482    4    180698482    180698482    737:mobile_element_insertion:0    .    .    .    ID=3804469;Name=essv11727646;Alias=ALU_umary_ALU_3979_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603363;submitter_variant_call_id=ALU_umary_ALU_3979_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    181503038    181503038    4    181503038    181503038    738:mobile_element_insertion:0    .    .    .    ID=3807308;Name=essv11728256;Alias=ALU_umary_ALU_3981_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603384;submitter_variant_call_id=ALU_umary_ALU_3981_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    182056563    182056563    4    182057128    182057128    739:copy_number_loss:565    .    .    .    ID=3809045;Name=essv11729798;Alias=BI_GS_DEL1_B3_P0876_6_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603402;Start_range=182056564,182056564;End_range=182057129,182057129;submitter_variant_call_id=BI_GS_DEL1_B3_P0876_6_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    183548783    183548783    4    183548783    183548783    740:indel:0    .    .    .    ID=3812341;Name=essv11731515;Alias=PHASE3_V1_SV_603_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603424;submitter_variant_call_id=PHASE3_V1_SV_603_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    185651676    185651676    4    185651676    185651676    741:mobile_element_insertion:0    .    .    .    ID=3824106;Name=essv11733927;Alias=ALU_umary_ALU_3997_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603467;submitter_variant_call_id=ALU_umary_ALU_3997_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    186361923    186361923    4    186361923    186361923    742:mobile_element_insertion:0    .    .    .    ID=3832568;Name=essv11737517;Alias=ALU_umary_ALU_4000_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603495;submitter_variant_call_id=ALU_umary_ALU_4000_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    186382159    186382159    4    186382159    186382159    743:mobile_element_insertion:0    .    .    .    ID=3833594;Name=essv11739152;Alias=ALU_umary_ALU_4001_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603498;submitter_variant_call_id=ALU_umary_ALU_4001_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    186441631    186441631    4    186444074    186444074    744:copy_number_loss:2443    .    .    .    ID=3835328;Name=essv11741012;Alias=BI_GS_DEL1_B2_P0880_294_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603505;Start_range=186441632,186441632;End_range=186444075,186444075;submitter_variant_call_id=BI_GS_DEL1_B2_P0880_294_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    187093486    187093486    4    187098251    187098251    745:copy_number_loss:4765    .    .    .    ID=3838609;Name=essv11743971;Alias=UW_VH_3645_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603522;Start_range=187093331,187093487;End_range=187098252,187098418;submitter_variant_call_id=UW_VH_3645_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    187093486    187093486    4    187093486    187093486    746:mobile_element_insertion:0    .    .    .    ID=3839929;Name=essv11742589;Alias=ALU_umary_ALU_4005_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603521;submitter_variant_call_id=ALU_umary_ALU_4005_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    187098230    187098230    4    187098230    187098230    747:mobile_element_insertion:0    .    .    .    ID=3841687;Name=essv11745170;Alias=ALU_umary_ALU_4006_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603524;submitter_variant_call_id=ALU_umary_ALU_4006_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    187213955    187213955    4    187214733    187214733    748:copy_number_loss:778    .    .    .    ID=3842695;Name=essv11746065;Alias=UW_VH_2367_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603526;Start_range=187213529,187213956;End_range=187214734,187215198;submitter_variant_call_id=UW_VH_2367_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    188686145    188686145    4    188686145    188686145    749:mobile_element_insertion:0    .    .    .    ID=3849676;Name=essv11748966;Alias=ALU_umary_ALU_4012_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603600;submitter_variant_call_id=ALU_umary_ALU_4012_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    189294175    189294175    4    189294175    189294175    750:indel:0    .    .    .    ID=3858096;Name=essv11751388;Alias=PHASE3_V1_SV_607_A2_NA12878;variant_call_so_id=SO:1000032;parent=esv3603639;submitter_variant_call_id=PHASE3_V1_SV_607_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    190058005    190058005    4    190064282    190064282    751:copy_number_loss:6277    .    .    .    ID=3866772;Name=essv11753704;Alias=BI_GS_DEL1_B1_P0884_52_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603675;Start_range=190058006,190058006;End_range=190064283,190064283;submitter_variant_call_id=BI_GS_DEL1_B1_P0884_52_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    190105407    190105407    4    190106159    190106159    752:copy_number_loss:752    .    .    .    ID=3868894;Name=essv11756033;Alias=EM_DL_DEL10831050_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603678;Start_range=190105258,190105558;End_range=190106010,190106310;submitter_variant_call_id=EM_DL_DEL10831050_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    190302416    190302416    4    190302713    190302713    753:copy_number_loss:297    .    .    .    ID=3873529;Name=essv11760311;Alias=BI_GS_DEL1_B4_P0884_66_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603686;Start_range=190302417,190302417;End_range=190302714,190302714;submitter_variant_call_id=BI_GS_DEL1_B4_P0884_66_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
4    190684482    190684482    4    190684482    190684482    754:mobile_element_insertion:0    .    .    .    ID=3876387;Name=essv11763530;Alias=SVA_umary_SVA_231_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603699;submitter_variant_call_id=SVA_umary_SVA_231_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
4    190899841    190899841    4    190899841    190899841    755:mobile_element_insertion:0    .    .    .    ID=3878221;Name=essv11764585;Alias=L1_umary_LINE1_1040_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603712;submitter_variant_call_id=L1_umary_LINE1_1040_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    474875    474875    5    474875    474875    756:indel:0    .    .    .    ID=3884331;Name=essv11767173;Alias=PHASE3_V1_SV_608_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603749;submitter_variant_call_id=PHASE3_V1_SV_608_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    1022802    1022802    5    1025876    1025876    757:copy_number_loss:3074    .    .    .    ID=3901121;Name=essv11775791;Alias=YL_CN_ESN_1200_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603794;Start_range=1021803,1023303;End_range=1025377,1026877;submitter_variant_call_id=YL_CN_ESN_1200_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    1178256    1178256    5    1180715    1180715    758:copy_number_loss:2459    .    .    .    ID=3903626;Name=essv11777269;Alias=BI_GS_DEL1_B4_P0887_66_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603799;Start_range=1178255,1178260;End_range=1180714,1180719;submitter_variant_call_id=BI_GS_DEL1_B4_P0887_66_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    1276769    1276769    5    1276769    1276769    759:indel:0    .    .    .    ID=3906991;Name=essv11778583;Alias=PHASE3_V1_SV_610_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603803;submitter_variant_call_id=PHASE3_V1_SV_610_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    1483830    1483830    5    1483830    1483830    760:indel:0    .    .    .    ID=3911615;Name=essv11781210;Alias=PHASE3_V1_SV_612_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603809;submitter_variant_call_id=PHASE3_V1_SV_612_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    1585516    1585516    5    1585516    1585516    761:mobile_element_insertion:0    .    .    .    ID=3915679;Name=essv11783178;Alias=ALU_umary_ALU_4031_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603813;submitter_variant_call_id=ALU_umary_ALU_4031_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    1627139    1627139    5    1628836    1628836    762:copy_number_loss:1697    .    .    .    ID=3917889;Name=essv11784219;Alias=BI_GS_DEL1_B5_P0887_523_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603816;Start_range=1627140,1627140;End_range=1628837,1628837;submitter_variant_call_id=BI_GS_DEL1_B5_P0887_523_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    1812651    1812651    5    1812651    1812651    763:mobile_element_insertion:0    .    .    .    ID=3920243;Name=essv11785551;Alias=ALU_umary_ALU_4032_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603823;submitter_variant_call_id=ALU_umary_ALU_4032_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    1924586    1924586    5    1925200    1925200    764:copy_number_loss:614    .    .    .    ID=3925125;Name=essv11787523;Alias=BI_GS_DEL1_B3_P0887_48_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603826;Start_range=1924587,1924587;End_range=1925201,1925201;submitter_variant_call_id=BI_GS_DEL1_B3_P0887_48_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    2769421    2769421    5    2769637    2769637    765:copy_number_loss:216    .    .    .    ID=3929562;Name=essv11789772;Alias=BI_GS_DEL1_B3_P0888_28_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603838;Start_range=2769422,2769422;End_range=2769638,2769638;submitter_variant_call_id=BI_GS_DEL1_B3_P0888_28_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    3141542    3141542    5    3141542    3141542    766:mobile_element_insertion:0    .    .    .    ID=3931183;Name=essv11790931;Alias=ALU_umary_ALU_4036_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603847;submitter_variant_call_id=ALU_umary_ALU_4036_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    4075845    4075845    5    4075845    4075845    767:mobile_element_insertion:0    .    .    .    ID=3938270;Name=essv11794358;Alias=ALU_umary_ALU_4041_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603869;submitter_variant_call_id=ALU_umary_ALU_4041_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    5132420    5132420    5    5132420    5132420    768:indel:0    .    .    .    ID=3942494;Name=essv11796599;Alias=PHASE3_V1_SV_616_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3603893;submitter_variant_call_id=PHASE3_V1_SV_616_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    5595247    5595247    5    5595247    5595247    769:mobile_element_insertion:0    .    .    .    ID=3947654;Name=essv11799175;Alias=ALU_umary_ALU_4048_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603901;submitter_variant_call_id=ALU_umary_ALU_4048_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    6284534    6284534    5    6284534    6284534    770:mobile_element_insertion:0    .    .    .    ID=3953135;Name=essv11801808;Alias=ALU_umary_ALU_4053_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3603913;submitter_variant_call_id=ALU_umary_ALU_4053_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    10273287    10273287    5    10275413    10275413    771:copy_number_loss:2126    .    .    .    ID=3967448;Name=essv11808698;Alias=EM_DL_DEL75971_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3603996;Start_range=10273138,10273438;End_range=10275264,10275564;submitter_variant_call_id=EM_DL_DEL75971_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    10574958    10574958    5    10575293    10575293    772:copy_number_loss:335    .    .    .    ID=3973093;Name=essv11811150;Alias=BI_GS_DEL1_B4_P0896_114_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604004;Start_range=10574959,10574959;End_range=10575294,10575294;submitter_variant_call_id=BI_GS_DEL1_B4_P0896_114_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    10756184    10756184    5    10756521    10756521    773:copy_number_loss:337    .    .    .    ID=3976844;Name=essv11813626;Alias=BI_GS_DEL1_B1_P0896_726_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604006;Start_range=10756185,10756185;End_range=10756522,10756522;submitter_variant_call_id=BI_GS_DEL1_B1_P0896_726_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    12769656    12769656    5    12769656    12769656    774:indel:0    .    .    .    ID=3981901;Name=essv11816122;Alias=PHASE3_V1_SV_621_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604050;submitter_variant_call_id=PHASE3_V1_SV_621_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    12811022    12811022    5    12820528    12820528    775:copy_number_loss:9506    .    .    .    ID=3984767;Name=essv11817344;Alias=BI_GS_DEL1_B2_P0898_564_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604052;Start_range=12811023,12811023;End_range=12820529,12820529;submitter_variant_call_id=BI_GS_DEL1_B2_P0898_564_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    16124845    16124845    5    16125526    16125526    776:copy_number_loss:681    .    .    .    ID=3988657;Name=essv11819367;Alias=UW_VH_2300_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604124;Start_range=16124492,16124846;End_range=16125527,16125936;submitter_variant_call_id=UW_VH_2300_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    16391791    16391791    5    16391791    16391791    777:mobile_element_insertion:0    .    .    .    ID=3989796;Name=essv11819881;Alias=ALU_umary_ALU_4108_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604129;submitter_variant_call_id=ALU_umary_ALU_4108_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    18570163    18570163    5    18570163    18570163    778:mobile_element_insertion:0    .    .    .    ID=4003600;Name=essv11826599;Alias=ALU_umary_ALU_4119_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604228;submitter_variant_call_id=ALU_umary_ALU_4119_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    19375248    19375248    5    19376392    19376392    779:copy_number_loss:1144    .    .    .    ID=4010528;Name=essv11830008;Alias=BI_GS_DEL1_B2_P0905_236_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604268;Start_range=19375249,19375250;End_range=19376393,19376394;submitter_variant_call_id=BI_GS_DEL1_B2_P0905_236_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    21207731    21207731    5    21207731    21207731    780:mobile_element_insertion:0    .    .    .    ID=4015512;Name=essv11832352;Alias=L1_umary_LINE1_1067_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604306;submitter_variant_call_id=L1_umary_LINE1_1067_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    21450196    21450196    5    21452447    21452447    781:copy_number_loss:2251    .    .    .    ID=4018625;Name=essv11833981;Alias=UW_VH_1431_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604311;Start_range=21449699,21450197;End_range=21452448,21452972;submitter_variant_call_id=UW_VH_1431_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    21515282    21515282    5    21515282    21515282    782:mobile_element_insertion:0    .    .    .    ID=4021545;Name=essv11835352;Alias=ALU_umary_ALU_4130_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604315;submitter_variant_call_id=ALU_umary_ALU_4130_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    21991640    21991640    5    21991640    21991640    783:indel:0    .    .    .    ID=4026051;Name=essv11838030;Alias=PHASE3_V1_SV_626_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604331;submitter_variant_call_id=PHASE3_V1_SV_626_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    22139515    22139515    5    22173753    22173753    784:copy_number_gain:34238    .    .    .    ID=4031289;Name=essv11840543;Alias=DUP_uwash_chr5_22139515_22173754_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3604336;submitter_variant_call_id=DUP_uwash_chr5_22139515_22173754_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    23903002    23903002    5    23905241    23905241    785:copy_number_loss:2239    .    .    .    ID=4037007;Name=essv11842996;Alias=BI_GS_DEL1_B4_P0909_180_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604382;Start_range=23902998,23903008;End_range=23905237,23905247;submitter_variant_call_id=BI_GS_DEL1_B4_P0909_180_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    25233925    25233925    5    25233925    25233925    786:mobile_element_insertion:0    .    .    .    ID=4040193;Name=essv11844886;Alias=ALU_umary_ALU_4154_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604416;submitter_variant_call_id=ALU_umary_ALU_4154_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    26186255    26186255    5    26186255    26186255    787:indel:0    .    .    .    ID=4043140;Name=essv11846339;Alias=PHASE3_V1_SV_628_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604444;submitter_variant_call_id=PHASE3_V1_SV_628_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    26796752    26796752    5    26801900    26801900    788:copy_number_loss:5148    .    .    .    ID=4047003;Name=essv11847986;Alias=UW_VH_471_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604455;Start_range=26796226,26796753;End_range=26801901,26802374;submitter_variant_call_id=UW_VH_471_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    27524868    27524868    5    27526439    27526439    789:copy_number_loss:1571    .    .    .    ID=4048352;Name=essv11848895;Alias=BI_GS_DEL1_B5_P0913_524_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604474;Start_range=27524857,27524882;End_range=27526428,27526453;submitter_variant_call_id=BI_GS_DEL1_B5_P0913_524_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    29346660    29346660    5    29346660    29346660    790:indel:0    .    .    .    ID=4055227;Name=essv11852199;Alias=PHASE3_V1_SV_634_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604528;submitter_variant_call_id=PHASE3_V1_SV_634_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    32338581    32338581    5    32338583    32338583    791:insertion:2    .    .    .    ID=4063898;Name=essv11856591;Alias=NUMT_umich_142_A1_NA12878;variant_call_so_id=SO:0000667;parent=esv3604607;Start_range=32338582,32338585;End_range=32338581,32338584;submitter_variant_call_id=NUMT_umich_142_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    33633347    33633347    5    33633347    33633347    792:mobile_element_insertion:0    .    .    .    ID=4072665;Name=essv11860977;Alias=L1_umary_LINE1_1089_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604658;submitter_variant_call_id=L1_umary_LINE1_1089_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    33797556    33797556    5    33797556    33797556    793:mobile_element_insertion:0    .    .    .    ID=4076822;Name=essv11862971;Alias=L1_umary_LINE1_1090_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604663;submitter_variant_call_id=L1_umary_LINE1_1090_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    34113269    34113269    5    34113269    34113269    794:mobile_element_insertion:0    .    .    .    ID=4078927;Name=essv11864083;Alias=ALU_umary_ALU_4205_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604670;submitter_variant_call_id=ALU_umary_ALU_4205_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    40181657    40181657    5    40181657    40181657    795:mobile_element_insertion:0    .    .    .    ID=4101917;Name=essv11875047;Alias=ALU_umary_ALU_4230_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604811;submitter_variant_call_id=ALU_umary_ALU_4230_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    40594481    40594481    5    40594481    40594481    796:indel:0    .    .    .    ID=4104841;Name=essv11877194;Alias=PHASE3_V1_SV_649_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604820;submitter_variant_call_id=PHASE3_V1_SV_649_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    41411977    41411977    5    41411977    41411977    797:indel:0    .    .    .    ID=4113729;Name=essv11881299;Alias=PHASE3_V1_SV_652_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604843;submitter_variant_call_id=PHASE3_V1_SV_652_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    43523637    43523637    5    43523637    43523637    798:indel:0    .    .    .    ID=4122618;Name=essv11885662;Alias=PHASE3_V1_SV_654_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3604906;submitter_variant_call_id=PHASE3_V1_SV_654_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    43541804    43541804    5    43541804    43541804    799:mobile_element_insertion:0    .    .    .    ID=4124764;Name=essv11886561;Alias=ALU_umary_ALU_4248_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3604907;submitter_variant_call_id=ALU_umary_ALU_4248_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    46270625    46270625    5    46275824    46275824    800:copy_number_loss:5199    .    .    .    ID=4145331;Name=essv11896609;Alias=BI_GS_DEL1_B4_P0932_21_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3604988;Start_range=46270626,46270626;End_range=46275825,46275825;submitter_variant_call_id=BI_GS_DEL1_B4_P0932_21_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    49437595    49437595    5    49437595    49437595    801:mobile_element_insertion:0    .    .    .    ID=4146532;Name=essv11897497;Alias=L1_umary_LINE1_1109_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605000;submitter_variant_call_id=L1_umary_LINE1_1109_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    49547583    49547583    5    49547583    49547583    802:mobile_element_insertion:0    .    .    .    ID=4147972;Name=essv11899471;Alias=L1_umary_LINE1_1111_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605018;submitter_variant_call_id=L1_umary_LINE1_1111_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    50785688    50785688    5    50785688    50785688    803:mobile_element_insertion:0    .    .    .    ID=4153681;Name=essv11901807;Alias=ALU_umary_ALU_4267_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605038;submitter_variant_call_id=ALU_umary_ALU_4267_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    51432355    51432355    5    51432355    51432355    804:mobile_element_insertion:0    .    .    .    ID=4155478;Name=essv11902462;Alias=ALU_umary_ALU_4270_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605048;submitter_variant_call_id=ALU_umary_ALU_4270_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    54865799    54865799    5    54865799    54865799    805:mobile_element_insertion:0    .    .    .    ID=4161022;Name=essv11905627;Alias=ALU_umary_ALU_4283_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605100;submitter_variant_call_id=ALU_umary_ALU_4283_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    55448009    55448009    5    55448009    55448009    806:mobile_element_insertion:0    .    .    .    ID=4165572;Name=essv11909398;Alias=SVA_umary_SVA_243_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605113;submitter_variant_call_id=SVA_umary_SVA_243_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    55689498    55689498    5    55689498    55689498    807:mobile_element_insertion:0    .    .    .    ID=4168505;Name=essv11911578;Alias=ALU_umary_ALU_4292_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605120;submitter_variant_call_id=ALU_umary_ALU_4292_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    55927979    55927979    5    55927979    55927979    808:mobile_element_insertion:0    .    .    .    ID=4171379;Name=essv11912945;Alias=ALU_umary_ALU_4293_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605122;submitter_variant_call_id=ALU_umary_ALU_4293_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    57320370    57320370    5    57338132    57338132    809:copy_number_loss:17762    .    .    .    ID=4182361;Name=essv11916840;Alias=DUP_uwash_chr5_57320371_57338133_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605146;submitter_variant_call_id=DUP_uwash_chr5_57320371_57338133_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    57323406    57323406    5    57333751    57333751    810:copy_number_loss:10345    .    .    .    ID=4183888;Name=essv11919298;Alias=SI_BD_5576_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605147;Start_range=57323129,57323499;End_range=57333702,57334030;submitter_variant_call_id=SI_BD_5576_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    57716224    57716224    5    57716224    57716224    811:mobile_element_insertion:0    .    .    .    ID=4187005;Name=essv11920720;Alias=ALU_umary_ALU_4301_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605155;submitter_variant_call_id=ALU_umary_ALU_4301_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    60001695    60001695    5    60003675    60003675    812:copy_number_loss:1980    .    .    .    ID=4198234;Name=essv11924515;Alias=SI_BD_5588_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605195;Start_range=60001372,60001755;End_range=60003571,60004000;submitter_variant_call_id=SI_BD_5588_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    61635349    61635349    5    61635349    61635349    813:mobile_element_insertion:0    .    .    .    ID=4204110;Name=essv11926609;Alias=ALU_umary_ALU_4323_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605232;submitter_variant_call_id=ALU_umary_ALU_4323_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    61857117    61857117    5    61857117    61857117    814:mobile_element_insertion:0    .    .    .    ID=4204733;Name=essv11928227;Alias=ALU_umary_ALU_4324_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605242;submitter_variant_call_id=ALU_umary_ALU_4324_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    62500875    62500875    5    62500875    62500875    815:indel:0    .    .    .    ID=4208904;Name=essv11930496;Alias=PHASE3_V1_SV_660_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3605255;submitter_variant_call_id=PHASE3_V1_SV_660_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    63698342    63698342    5    63701358    63701358    816:copy_number_loss:3016    .    .    .    ID=4220048;Name=essv11934311;Alias=BI_GS_DEL1_B5_P0949_792_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605279;Start_range=63698343,63698343;End_range=63701359,63701359;submitter_variant_call_id=BI_GS_DEL1_B5_P0949_792_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    65028068    65028068    5    65030370    65030370    817:copy_number_loss:2302    .    .    .    ID=4222883;Name=essv11935760;Alias=BI_GS_DEL1_B1_P0951_20_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605303;Start_range=65028068,65028071;End_range=65030370,65030373;submitter_variant_call_id=BI_GS_DEL1_B1_P0951_20_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    65569640    65569640    5    65569640    65569640    818:mobile_element_insertion:0    .    .    .    ID=4223869;Name=essv11936507;Alias=ALU_umary_ALU_4343_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605310;submitter_variant_call_id=ALU_umary_ALU_4343_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    71157674    71157674    5    71157674    71157674    819:indel:0    .    .    .    ID=4234918;Name=essv11942332;Alias=PHASE3_V1_SV_664_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3605396;submitter_variant_call_id=PHASE3_V1_SV_664_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    73145925    73145925    5    73145925    73145925    820:mobile_element_insertion:0    .    .    .    ID=4241485;Name=essv11944677;Alias=ALU_umary_ALU_4372_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605422;submitter_variant_call_id=ALU_umary_ALU_4372_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    75275330    75275330    5    75275330    75275330    821:mobile_element_insertion:0    .    .    .    ID=4243975;Name=essv11945908;Alias=ALU_umary_ALU_4383_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605454;submitter_variant_call_id=ALU_umary_ALU_4383_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    76882855    76882855    5    76882855    76882855    822:mobile_element_insertion:0    .    .    .    ID=4248307;Name=essv11948899;Alias=ALU_umary_ALU_4393_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605491;submitter_variant_call_id=ALU_umary_ALU_4393_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    78109795    78109795    5    78111866    78111866    823:copy_number_loss:2071    .    .    .    ID=4252610;Name=essv11950626;Alias=BI_GS_DEL1_B4_P0964_26_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605517;Start_range=78109796,78109797;End_range=78111867,78111868;submitter_variant_call_id=BI_GS_DEL1_B4_P0964_26_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    78442883    78442883    5    78442883    78442883    824:mobile_element_insertion:0    .    .    .    ID=4255772;Name=essv11952857;Alias=ALU_umary_ALU_4406_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605524;submitter_variant_call_id=ALU_umary_ALU_4406_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    79462625    79462625    5    79683256    79683256    825:copy_number_gain:220631    .    .    .    ID=4260274;Name=essv11954848;Alias=DUP_uwash_chr5_79462625_79683257_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3605557;submitter_variant_call_id=DUP_uwash_chr5_79462625_79683257_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    83127431    83127431    5    83127431    83127431    826:mobile_element_insertion:0    .    .    .    ID=4269825;Name=essv11958853;Alias=ALU_umary_ALU_4427_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605641;submitter_variant_call_id=ALU_umary_ALU_4427_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    83948133    83948133    5    83955050    83955050    827:copy_number_loss:6917    .    .    .    ID=4272060;Name=essv11960902;Alias=YL_CN_FIN_1170_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605655;Start_range=83947134,83948634;End_range=83954551,83956051;submitter_variant_call_id=YL_CN_FIN_1170_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    84384491    84384491    5    84384491    84384491    828:mobile_element_insertion:0    .    .    .    ID=4274156;Name=essv11962059;Alias=ALU_umary_ALU_4434_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605668;submitter_variant_call_id=ALU_umary_ALU_4434_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    84544401    84544401    5    84544401    84544401    829:mobile_element_insertion:0    .    .    .    ID=4275424;Name=essv11963398;Alias=ALU_umary_ALU_4436_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605676;submitter_variant_call_id=ALU_umary_ALU_4436_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    84929790    84929790    5    84929790    84929790    830:mobile_element_insertion:0    .    .    .    ID=4279367;Name=essv11964577;Alias=ALU_umary_ALU_4439_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605686;submitter_variant_call_id=ALU_umary_ALU_4439_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    86115329    86115329    5    86117862    86117862    831:copy_number_loss:2533    .    .    .    ID=4284435;Name=essv11966272;Alias=BI_GS_DEL1_B1_P0972_84_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605713;Start_range=86115330,86115330;End_range=86117863,86117863;submitter_variant_call_id=BI_GS_DEL1_B1_P0972_84_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    86246007    86246007    5    86247145    86247145    832:copy_number_loss:1138    .    .    .    ID=4284867;Name=essv11966840;Alias=BI_GS_DEL1_B5_P0972_286_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605716;Start_range=86246008,86246008;End_range=86247146,86247146;submitter_variant_call_id=BI_GS_DEL1_B5_P0972_286_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    86372694    86372694    5    86372694    86372694    833:mobile_element_insertion:0    .    .    .    ID=4287209;Name=essv11968357;Alias=ALU_umary_ALU_4445_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605720;submitter_variant_call_id=ALU_umary_ALU_4445_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    89450780    89450780    5    89450780    89450780    834:mobile_element_insertion:0    .    .    .    ID=4297915;Name=essv11973478;Alias=L1_umary_LINE1_1163_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605757;submitter_variant_call_id=L1_umary_LINE1_1163_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    89450996    89450996    5    89450996    89450996    835:mobile_element_insertion:0    .    .    .    ID=4299333;Name=essv11975717;Alias=L1_umary_LINE1_1164_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605758;submitter_variant_call_id=L1_umary_LINE1_1164_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    90499766    90499766    5    90502127    90502127    836:copy_number_loss:2361    .    .    .    ID=4307671;Name=essv11978939;Alias=SI_BD_5728_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605774;Start_range=90499463,90499830;End_range=90502074,90502432;submitter_variant_call_id=SI_BD_5728_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    94745175    94745175    5    94745175    94745175    837:mobile_element_insertion:0    .    .    .    ID=4316990;Name=essv11981962;Alias=ALU_umary_ALU_4482_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605832;submitter_variant_call_id=ALU_umary_ALU_4482_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    94994219    94994219    5    94994219    94994219    838:mobile_element_insertion:0    .    .    .    ID=4317295;Name=essv11982789;Alias=ALU_umary_ALU_4483_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605835;submitter_variant_call_id=ALU_umary_ALU_4483_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    95966476    95966476    5    95967327    95967327    839:copy_number_loss:851    .    .    .    ID=4320658;Name=essv11984152;Alias=BI_GS_DEL1_B1_P0981_930_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605862;Start_range=95966466,95966489;End_range=95967317,95967340;submitter_variant_call_id=BI_GS_DEL1_B1_P0981_930_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    96866422    96866422    5    96866422    96866422    840:mobile_element_insertion:0    .    .    .    ID=4323209;Name=essv11985432;Alias=L1_umary_LINE1_1173_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605884;submitter_variant_call_id=L1_umary_LINE1_1173_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    97401557    97401557    5    97402758    97402758    841:copy_number_loss:1201    .    .    .    ID=4324643;Name=essv11987280;Alias=BI_GS_DEL1_B1_P0983_307_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605905;Start_range=97401558,97401558;End_range=97402759,97402759;submitter_variant_call_id=BI_GS_DEL1_B1_P0983_307_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    97413946    97413946    5    97413946    97413946    842:indel:0    .    .    .    ID=4327188;Name=essv11989126;Alias=PHASE3_V1_SV_685_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3605906;submitter_variant_call_id=PHASE3_V1_SV_685_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    98345116    98345116    5    98347478    98347478    843:copy_number_loss:2362    .    .    .    ID=4333859;Name=essv11991460;Alias=BI_GS_DEL1_B1_P0984_298_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605925;Start_range=98345117,98345117;End_range=98347479,98347479;submitter_variant_call_id=BI_GS_DEL1_B1_P0984_298_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    98839883    98839883    5    98842905    98842905    844:copy_number_loss:3022    .    .    .    ID=4336829;Name=essv11993484;Alias=BI_GS_DEL1_B5_P0984_857_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605943;Start_range=98839884,98839885;End_range=98842906,98842907;submitter_variant_call_id=BI_GS_DEL1_B5_P0984_857_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    99093636    99093636    5    99093636    99093636    845:mobile_element_insertion:0    .    .    .    ID=4340593;Name=essv11994907;Alias=ALU_umary_ALU_4507_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605947;submitter_variant_call_id=ALU_umary_ALU_4507_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    99304382    99304382    5    99304382    99304382    846:mobile_element_insertion:0    .    .    .    ID=4342454;Name=essv11996429;Alias=ALU_umary_ALU_4510_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605957;submitter_variant_call_id=ALU_umary_ALU_4510_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    99400885    99400885    5    99401902    99401902    847:copy_number_loss:1017    .    .    .    ID=4342910;Name=essv11997158;Alias=BI_GS_DEL1_B2_P0985_246_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3605961;Start_range=99400869,99400903;End_range=99401886,99401920;submitter_variant_call_id=BI_GS_DEL1_B2_P0985_246_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    100060181    100060181    5    100060181    100060181    848:mobile_element_insertion:0    .    .    .    ID=4348022;Name=essv11997940;Alias=ALU_umary_ALU_4514_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605988;submitter_variant_call_id=ALU_umary_ALU_4514_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    100497395    100497395    5    100497395    100497395    849:mobile_element_insertion:0    .    .    .    ID=4350084;Name=essv11999409;Alias=ALU_umary_ALU_4517_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3605995;submitter_variant_call_id=ALU_umary_ALU_4517_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    101693790    101693790    5    101694718    101694718    850:copy_number_loss:928    .    .    .    ID=4355449;Name=essv12001636;Alias=BI_GS_DEL1_B2_P0987_434_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606046;Start_range=101693791,101693791;End_range=101694719,101694719;submitter_variant_call_id=BI_GS_DEL1_B2_P0987_434_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    102963541    102963541    5    102963541    102963541    851:indel:0    .    .    .    ID=4360272;Name=essv12004146;Alias=PHASE3_V1_SV_688_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3606079;submitter_variant_call_id=PHASE3_V1_SV_688_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    104429222    104429222    5    104506020    104506020    852:copy_number_loss:76798    .    .    .    ID=4368857;Name=essv12007557;Alias=DUP_gs_CNV_5_104429223_104506021_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606138;submitter_variant_call_id=DUP_gs_CNV_5_104429223_104506021_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    104435941    104435941    5    104443141    104443141    853:copy_number_loss:7200    .    .    .    ID=4368876;Name=essv12007568;Alias=BI_GS_DEL1_B4_P0990_89_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606140;Start_range=104435931,104435953;End_range=104443131,104443153;submitter_variant_call_id=BI_GS_DEL1_B4_P0990_89_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    104480243    104480243    5    104497581    104497581    854:copy_number_loss:17338    .    .    .    ID=4368895;Name=essv12007578;Alias=YL_CN_FIN_1195_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606141;Start_range=104479244,104480744;End_range=104497082,104498582;submitter_variant_call_id=YL_CN_FIN_1195_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    106236883    106236883    5    106239671    106239671    855:copy_number_loss:2788    .    .    .    ID=4373943;Name=essv12011479;Alias=SI_BD_5815_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606184;Start_range=106236746,106236934;End_range=106239622,106239810;submitter_variant_call_id=SI_BD_5815_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    106239204    106239204    5    106239204    106239204    856:indel:0    .    .    .    ID=4374458;Name=essv12011995;Alias=PHASE3_V1_SV_693_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3606185;submitter_variant_call_id=PHASE3_V1_SV_693_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    110085921    110085921    5    110085921    110085921    857:mobile_element_insertion:0    .    .    .    ID=4390640;Name=essv12018988;Alias=ALU_umary_ALU_4571_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606255;submitter_variant_call_id=ALU_umary_ALU_4571_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    110694943    110694943    5    110695263    110695263    858:copy_number_loss:320    .    .    .    ID=4392946;Name=essv12021080;Alias=BI_GS_DEL1_B2_P0996_490_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606270;Start_range=110694944,110694944;End_range=110695264,110695264;submitter_variant_call_id=BI_GS_DEL1_B2_P0996_490_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    112477736    112477736    5    112478296    112478296    859:copy_number_loss:560    .    .    .    ID=4400442;Name=essv12023430;Alias=BI_GS_DEL1_B5_P0998_612_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606309;Start_range=112477717,112477758;End_range=112478277,112478318;submitter_variant_call_id=BI_GS_DEL1_B5_P0998_612_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    114355262    114355262    5    114355262    114355262    860:mobile_element_insertion:0    .    .    .    ID=4404350;Name=essv12026067;Alias=ALU_umary_ALU_4589_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606357;submitter_variant_call_id=ALU_umary_ALU_4589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    114739735    114739735    5    114739735    114739735    861:mobile_element_insertion:0    .    .    .    ID=4405391;Name=essv12027991;Alias=ALU_umary_ALU_4592_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606367;submitter_variant_call_id=ALU_umary_ALU_4592_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    114969400    114969400    5    114969874    114969874    862:copy_number_loss:474    .    .    .    ID=4408885;Name=essv12029796;Alias=BI_GS_DEL1_B3_P1000_41_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606372;Start_range=114969387,114969415;End_range=114969861,114969889;submitter_variant_call_id=BI_GS_DEL1_B3_P1000_41_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    116744642    116744642    5    116744642    116744642    863:mobile_element_insertion:0    .    .    .    ID=4416202;Name=essv12031029;Alias=ALU_umary_ALU_4606_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606423;submitter_variant_call_id=ALU_umary_ALU_4606_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    117387106    117387106    5    117393890    117393890    864:copy_number_loss:6784    .    .    .    ID=4417896;Name=essv12032326;Alias=BI_GS_DEL1_B2_P1003_267_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606441;Start_range=117387107,117387107;End_range=117393891,117393891;submitter_variant_call_id=BI_GS_DEL1_B2_P1003_267_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    117868218    117868218    5    117868528    117868528    865:copy_number_loss:310    .    .    .    ID=4419631;Name=essv12032990;Alias=BI_GS_DEL1_B2_P1003_586_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606464;Start_range=117868219,117868219;End_range=117868529,117868529;submitter_variant_call_id=BI_GS_DEL1_B2_P1003_586_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    118977634    118977634    5    118977634    118977634    866:mobile_element_insertion:0    .    .    .    ID=4423100;Name=essv12034780;Alias=ALU_umary_ALU_4620_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606493;submitter_variant_call_id=ALU_umary_ALU_4620_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    119380173    119380173    5    119382670    119382670    867:copy_number_loss:2497    .    .    .    ID=4425753;Name=essv12037419;Alias=UW_VH_15926_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606505;Start_range=119379580,119380174;End_range=119382671,119383086;submitter_variant_call_id=UW_VH_15926_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    121059231    121059231    5    121060006    121060006    868:copy_number_loss:775    .    .    .    ID=4435226;Name=essv12041927;Alias=BI_GS_DEL1_B1_P1007_48_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606576;Start_range=121059232,121059232;End_range=121060007,121060007;submitter_variant_call_id=BI_GS_DEL1_B1_P1007_48_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    122582809    122582809    5    122582809    122582809    869:mobile_element_insertion:0    .    .    .    ID=4441251;Name=essv12043413;Alias=ALU_umary_ALU_4637_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606601;submitter_variant_call_id=ALU_umary_ALU_4637_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    123194217    123194217    5    123194217    123194217    870:mobile_element_insertion:0    .    .    .    ID=4443809;Name=essv12046019;Alias=ALU_umary_ALU_4641_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606621;submitter_variant_call_id=ALU_umary_ALU_4641_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    124484339    124484339    5    124484339    124484339    871:indel:0    .    .    .    ID=4449897;Name=essv12049678;Alias=PHASE3_V1_SV_707_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3606650;submitter_variant_call_id=PHASE3_V1_SV_707_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    125730727    125730727    5    125730727    125730727    872:mobile_element_insertion:0    .    .    .    ID=4456250;Name=essv12050680;Alias=ALU_umary_ALU_4653_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606676;submitter_variant_call_id=ALU_umary_ALU_4653_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    126458367    126458367    5    126458810    126458810    873:copy_number_loss:443    .    .    .    ID=4458002;Name=essv12053014;Alias=BI_GS_DEL1_B4_P1012_86_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606702;Start_range=126458368,126458368;End_range=126458811,126458811;submitter_variant_call_id=BI_GS_DEL1_B4_P1012_86_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    127172318    127172318    5    127173285    127173285    874:copy_number_loss:967    .    .    .    ID=4463769;Name=essv12055062;Alias=SI_BD_5930_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606712;Start_range=127172037,127172378;End_range=127173220,127173568;submitter_variant_call_id=SI_BD_5930_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    127172366    127172366    5    127172678    127172678    875:copy_number_loss:312    .    .    .    ID=4465023;Name=essv12057134;Alias=BI_GS_DEL1_B5_P1013_223_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606713;Start_range=127172339,127172395;End_range=127172651,127172707;submitter_variant_call_id=BI_GS_DEL1_B5_P1013_223_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    127335984    127335984    5    127336913    127336913    876:copy_number_loss:929    .    .    .    ID=4467670;Name=essv12058950;Alias=BI_GS_DEL1_B2_P1013_234_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606718;Start_range=127335985,127335985;End_range=127336914,127336914;submitter_variant_call_id=BI_GS_DEL1_B2_P1013_234_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    130853257    130853257    5    130853257    130853257    877:mobile_element_insertion:0    .    .    .    ID=4480808;Name=essv12063780;Alias=ALU_umary_ALU_4684_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606793;submitter_variant_call_id=ALU_umary_ALU_4684_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    135115147    135115147    5    135120699    135120699    878:copy_number_loss:5552    .    .    .    ID=4490822;Name=essv12068179;Alias=BI_GS_DEL1_B2_P1021_98_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606867;Start_range=135115147,135115149;End_range=135120699,135120701;submitter_variant_call_id=BI_GS_DEL1_B2_P1021_98_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    136851112    136851112    5    136857393    136857393    879:copy_number_loss:6281    .    .    .    ID=4496807;Name=essv12071668;Alias=DUP_uwash_chr5_136851112_136857394_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606902;submitter_variant_call_id=DUP_uwash_chr5_136851112_136857394_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    136854588    136854588    5    136856556    136856556    880:copy_number_loss:1968    .    .    .    ID=4498964;Name=essv12074162;Alias=YL_CN_CDX_1103_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606903;Start_range=136853589,136855089;End_range=136856057,136857557;submitter_variant_call_id=YL_CN_CDX_1103_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    137807354    137807354    5    137817068    137817068    881:copy_number_loss:9714    .    .    .    ID=4506979;Name=essv12075868;Alias=YL_CN_CEU_1626_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3606925;Start_range=137806355,137807855;End_range=137816569,137818069;submitter_variant_call_id=YL_CN_CEU_1626_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    139595137    139595137    5    139595137    139595137    882:mobile_element_insertion:0    .    .    .    ID=4507880;Name=essv12076576;Alias=ALU_umary_ALU_4708_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3606947;submitter_variant_call_id=ALU_umary_ALU_4708_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    144871902    144871902    5    144872806    144872806    883:copy_number_loss:904    .    .    .    ID=4529531;Name=essv12087601;Alias=BI_GS_DEL1_B5_P1030_1029_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607063;Start_range=144871903,144871903;End_range=144872807,144872807;submitter_variant_call_id=BI_GS_DEL1_B5_P1030_1029_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    146637735    146637735    5    146637735    146637735    884:mobile_element_insertion:0    .    .    .    ID=4536175;Name=essv12092108;Alias=ALU_umary_ALU_4739_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607091;submitter_variant_call_id=ALU_umary_ALU_4739_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    152529737    152529737    5    152529737    152529737    885:mobile_element_insertion:0    .    .    .    ID=4562112;Name=essv12103502;Alias=ALU_umary_ALU_4773_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607218;submitter_variant_call_id=ALU_umary_ALU_4773_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    153092141    153092141    5    153092141    153092141    886:indel:0    .    .    .    ID=4563073;Name=essv12104032;Alias=PHASE3_V1_SV_724_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607230;submitter_variant_call_id=PHASE3_V1_SV_724_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    155311784    155311784    5    155312579    155312579    887:copy_number_loss:795    .    .    .    ID=4569256;Name=essv12107570;Alias=BI_GS_DEL1_B4_P1041_70_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607271;Start_range=155311785,155311785;End_range=155312580,155312580;submitter_variant_call_id=BI_GS_DEL1_B4_P1041_70_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    156566739    156566739    5    156566739    156566739    888:mobile_element_insertion:0    .    .    .    ID=4578359;Name=essv12111358;Alias=ALU_umary_ALU_4796_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607311;submitter_variant_call_id=ALU_umary_ALU_4796_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    158717171    158717171    5    158717171    158717171    889:mobile_element_insertion:0    .    .    .    ID=4581042;Name=essv12113160;Alias=ALU_umary_ALU_4807_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607339;submitter_variant_call_id=ALU_umary_ALU_4807_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    159122154    159122154    5    159122154    159122154    890:mobile_element_insertion:0    .    .    .    ID=4583730;Name=essv12115243;Alias=ALU_umary_ALU_4809_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607346;submitter_variant_call_id=ALU_umary_ALU_4809_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    159351201    159351201    5    159351201    159351201    891:mobile_element_insertion:0    .    .    .    ID=4586215;Name=essv12116233;Alias=L1_umary_LINE1_1240_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607355;submitter_variant_call_id=L1_umary_LINE1_1240_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    166402762    166402762    5    166403635    166403635    892:copy_number_loss:873    .    .    .    ID=4606434;Name=essv12125146;Alias=BI_GS_DEL1_B2_P1052_247_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607512;Start_range=166402763,166402763;End_range=166403636,166403636;submitter_variant_call_id=BI_GS_DEL1_B2_P1052_247_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    166474360    166474360    5    166474360    166474360    893:indel:0    .    .    .    ID=4607009;Name=essv12125975;Alias=PHASE3_V1_SV_731_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607516;submitter_variant_call_id=PHASE3_V1_SV_731_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    168911932    168911932    5    168911932    168911932    894:mobile_element_insertion:0    .    .    .    ID=4611183;Name=essv12127854;Alias=ALU_umary_ALU_4861_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607546;submitter_variant_call_id=ALU_umary_ALU_4861_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    170129841    170129841    5    170131381    170131381    895:copy_number_loss:1540    .    .    .    ID=4616028;Name=essv12130088;Alias=SI_BD_6161_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607568;Start_range=170129625,170129892;End_range=170131332,170131599;submitter_variant_call_id=SI_BD_6161_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    170201338    170201338    5    170201338    170201338    896:mobile_element_insertion:0    .    .    .    ID=4617166;Name=essv12131965;Alias=ALU_umary_ALU_4866_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607569;submitter_variant_call_id=ALU_umary_ALU_4866_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    171893745    171893745    5    171893745    171893745    897:mobile_element_insertion:0    .    .    .    ID=4622786;Name=essv12133733;Alias=ALU_umary_ALU_4873_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607594;submitter_variant_call_id=ALU_umary_ALU_4873_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    174760805    174760805    5    174760805    174760805    898:mobile_element_insertion:0    .    .    .    ID=4630008;Name=essv12136866;Alias=ALU_umary_ALU_4886_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607646;submitter_variant_call_id=ALU_umary_ALU_4886_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    175215640    175215640    5    175215640    175215640    899:indel:0    .    .    .    ID=4632131;Name=essv12138827;Alias=PHASE3_V1_SV_735_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607655;submitter_variant_call_id=PHASE3_V1_SV_735_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    175353977    175353977    5    175371352    175371352    900:copy_number_gain:17375    .    .    .    ID=4635129;Name=essv12141267;Alias=DUP_gs_CNV_5_175353978_175371353_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3607658;submitter_variant_call_id=DUP_gs_CNV_5_175353978_175371353_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    177199169    177199169    5    177205309    177205309    901:copy_number_loss:6140    .    .    .    ID=4645136;Name=essv12144761;Alias=UW_VH_14200_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607693;Start_range=177199111,177199170;End_range=177205310,177205438;submitter_variant_call_id=UW_VH_14200_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    177405750    177405750    5    177406550    177406550    902:copy_number_loss:800    .    .    .    ID=4647631;Name=essv12147131;Alias=EM_DL_DEL10903754_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607703;Start_range=177405601,177405901;End_range=177406401,177406701;submitter_variant_call_id=EM_DL_DEL10903754_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
5    178109063    178109063    5    178113415    178113415    903:copy_number_loss:4352    .    .    .    ID=4653702;Name=essv12148843;Alias=BI_GS_DEL1_B5_P1064_128_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607719;Start_range=178109064,178109064;End_range=178113416,178113416;submitter_variant_call_id=BI_GS_DEL1_B5_P1064_128_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    179369184    179369184    5    179369184    179369184    904:mobile_element_insertion:0    .    .    .    ID=4659187;Name=essv12151790;Alias=ALU_umary_ALU_4898_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3607757;submitter_variant_call_id=ALU_umary_ALU_4898_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    179847333    179847333    5    179848558    179848558    905:copy_number_loss:1225    .    .    .    ID=4660987;Name=essv12152836;Alias=BI_GS_DEL1_B3_P1065_24_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607779;Start_range=179847300,179847368;End_range=179848525,179848593;submitter_variant_call_id=BI_GS_DEL1_B3_P1065_24_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
5    180027090    180027090    5    180027090    180027090    906:indel:0    .    .    .    ID=4662392;Name=essv12153046;Alias=PHASE3_V1_SV_738_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607787;submitter_variant_call_id=PHASE3_V1_SV_738_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    256501    256501    6    293372    293372    907:copy_number_gain:36871    .    .    .    ID=4679318;Name=essv12161340;Alias=DUP_gs_CNV_6_256502_293373_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3607843;submitter_variant_call_id=DUP_gs_CNV_6_256502_293373_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    305180    305180    6    340600    340600    908:copy_number_gain:35420    .    .    .    ID=4684870;Name=essv12163723;Alias=DUP_gs_CNV_6_305181_340601_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3607845;submitter_variant_call_id=DUP_gs_CNV_6_305181_340601_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    327585    327585    6    368711    368711    909:copy_number_gain:41126    .    .    .    ID=4688110;Name=essv12166242;Alias=DUP_gs_CNV_6_327586_368712_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3607848;submitter_variant_call_id=DUP_gs_CNV_6_327586_368712_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    380340    380340    6    380340    380340    910:indel:0    .    .    .    ID=4692786;Name=essv12168804;Alias=PHASE3_V1_SV_739_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607851;submitter_variant_call_id=PHASE3_V1_SV_739_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    666376    666376    6    667820    667820    911:copy_number_loss:1444    .    .    .    ID=4699071;Name=essv12170984;Alias=EM_DL_DEL10906321_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607860;Start_range=666227,666527;End_range=667671,667971;submitter_variant_call_id=EM_DL_DEL10906321_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    1234083    1234083    6    1234083    1234083    912:indel:0    .    .    .    ID=4705852;Name=essv12173787;Alias=PHASE3_V1_SV_740_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3607888;submitter_variant_call_id=PHASE3_V1_SV_740_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    5898450    5898450    6    5898881    5898881    913:copy_number_loss:431    .    .    .    ID=4718690;Name=essv12180686;Alias=BI_GS_DEL1_B2_P1072_726_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3607984;Start_range=5898451,5898451;End_range=5898882,5898882;submitter_variant_call_id=BI_GS_DEL1_B2_P1072_726_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    9179917    9179917    6    9179917    9179917    914:indel:0    .    .    .    ID=4727394;Name=essv12184781;Alias=PHASE3_V1_SV_745_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608045;submitter_variant_call_id=PHASE3_V1_SV_745_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    10264424    10264424    6    10265262    10265262    915:copy_number_loss:838    .    .    .    ID=4733380;Name=essv12187823;Alias=BI_GS_DEL1_B1_P1077_251_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608068;Start_range=10264425,10264425;End_range=10265263,10265263;submitter_variant_call_id=BI_GS_DEL1_B1_P1077_251_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    12102182    12102182    6    12102182    12102182    916:mobile_element_insertion:0    .    .    .    ID=4737650;Name=essv12189842;Alias=ALU_umary_ALU_4967_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608106;submitter_variant_call_id=ALU_umary_ALU_4967_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    13503048    13503048    6    13503048    13503048    917:mobile_element_insertion:0    .    .    .    ID=4744344;Name=essv12192890;Alias=L1_umary_LINE1_1263_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608128;submitter_variant_call_id=L1_umary_LINE1_1263_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    13882548    13882548    6    13883851    13883851    918:copy_number_loss:1303    .    .    .    ID=4752043;Name=essv12196881;Alias=EM_DL_DEL10912917_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608140;Start_range=13882399,13882699;End_range=13883702,13884002;submitter_variant_call_id=EM_DL_DEL10912917_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    14745281    14745281    6    14745688    14745688    919:copy_number_loss:407    .    .    .    ID=4755923;Name=essv12199096;Alias=BI_GS_DEL1_B5_P1081_1036_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608152;Start_range=14745282,14745282;End_range=14745689,14745689;submitter_variant_call_id=BI_GS_DEL1_B5_P1081_1036_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    17416397    17416397    6    17416397    17416397    920:mobile_element_insertion:0    .    .    .    ID=4765951;Name=essv12203892;Alias=ALU_umary_ALU_4990_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608211;submitter_variant_call_id=ALU_umary_ALU_4990_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    18346398    18346398    6    18346398    18346398    921:mobile_element_insertion:0    .    .    .    ID=4769898;Name=essv12205759;Alias=ALU_umary_ALU_4996_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608237;submitter_variant_call_id=ALU_umary_ALU_4996_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    18402111    18402111    6    18402923    18402923    922:copy_number_loss:812    .    .    .    ID=4775855;Name=essv12207483;Alias=SI_BD_6402_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608240;Start_range=18401794,18402162;End_range=18402861,18403242;submitter_variant_call_id=SI_BD_6402_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    18402130    18402130    6    18402446    18402446    923:copy_number_loss:316    .    .    .    ID=4776750;Name=essv12209622;Alias=BI_GS_DEL1_B1_P1085_313_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608241;Start_range=18402102,18402161;End_range=18402418,18402477;submitter_variant_call_id=BI_GS_DEL1_B1_P1085_313_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    19137112    19137112    6    19137112    19137112    924:mobile_element_insertion:0    .    .    .    ID=4784778;Name=essv12213031;Alias=ALU_umary_ALU_5002_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608262;submitter_variant_call_id=ALU_umary_ALU_5002_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    19346453    19346453    6    19346453    19346453    925:mobile_element_insertion:0    .    .    .    ID=4786266;Name=essv12213987;Alias=ALU_umary_ALU_5004_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608271;submitter_variant_call_id=ALU_umary_ALU_5004_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    20259856    20259856    6    20259856    20259856    926:indel:0    .    .    .    ID=4794506;Name=essv12217759;Alias=PHASE3_V1_SV_751_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608292;submitter_variant_call_id=PHASE3_V1_SV_751_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    20887918    20887918    6    20887918    20887918    927:mobile_element_insertion:0    .    .    .    ID=4798150;Name=essv12219665;Alias=ALU_umary_ALU_5011_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608303;submitter_variant_call_id=ALU_umary_ALU_5011_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    22501806    22501806    6    22501806    22501806    928:indel:0    .    .    .    ID=4808954;Name=essv12224966;Alias=PHASE3_V1_SV_754_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608338;submitter_variant_call_id=PHASE3_V1_SV_754_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    23743261    23743261    6    23745946    23745946    929:copy_number_loss:2685    .    .    .    ID=4811932;Name=essv12226651;Alias=BI_GS_DEL1_B1_P1090_610_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608353;Start_range=23743262,23743262;End_range=23745947,23745947;submitter_variant_call_id=BI_GS_DEL1_B1_P1090_610_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    23978360    23978360    6    23978360    23978360    930:mobile_element_insertion:0    .    .    .    ID=4815869;Name=essv12228473;Alias=ALU_umary_ALU_5026_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608362;submitter_variant_call_id=ALU_umary_ALU_5026_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    24811805    24811805    6    24818031    24818031    931:copy_number_loss:6226    .    .    .    ID=4820645;Name=essv12231277;Alias=YL_CN_TSI_1299_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608371;Start_range=24810806,24812306;End_range=24817532,24819032;submitter_variant_call_id=YL_CN_TSI_1299_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    26678935    26678935    6    26686490    26686490    932:copy_number_gain:7555    .    .    .    ID=4828362;Name=essv12234616;Alias=DUP_gs_CNV_6_26678936_26686491_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3608412;submitter_variant_call_id=DUP_gs_CNV_6_26678936_26686491_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    26739613    26739613    6    26748927    26748927    933:copy_number_loss:9314    .    .    .    ID=4829962;Name=essv12236378;Alias=DUP_gs_CNV_6_26739614_26748928_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608414;submitter_variant_call_id=DUP_gs_CNV_6_26739614_26748928_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    26962173    26962173    6    26962173    26962173    934:mobile_element_insertion:0    .    .    .    ID=4831357;Name=essv12237641;Alias=ALU_umary_ALU_5039_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608420;submitter_variant_call_id=ALU_umary_ALU_5039_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    29650414    29650414    6    29651089    29651089    935:copy_number_loss:675    .    .    .    ID=4837015;Name=essv12240393;Alias=BI_GS_DEL1_B4_P1096_139_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608483;Start_range=29650415,29650416;End_range=29651090,29651091;submitter_variant_call_id=BI_GS_DEL1_B4_P1096_139_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    29699559    29699559    6    29699559    29699559    936:mobile_element_insertion:0    .    .    .    ID=4837752;Name=essv12240648;Alias=SVA_umary_SVA_277_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608486;submitter_variant_call_id=SVA_umary_SVA_277_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    29843521    29843521    6    29849189    29849189    937:copy_number_loss:5668    .    .    .    ID=4839727;Name=essv12243290;Alias=EM_DL_DEL82419_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608492;Start_range=29843372,29843672;End_range=29849040,29849340;submitter_variant_call_id=EM_DL_DEL82419_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    29899943    29899943    6    29901524    29901524    938:copy_number_loss:1581    .    .    .    ID=4847093;Name=essv12246597;Alias=YL_CN_CEU_1759_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608495;Start_range=29898944,29900444;End_range=29901025,29902525;submitter_variant_call_id=YL_CN_CEU_1759_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    29998495    29998495    6    29998495    29998495    939:mobile_element_insertion:0    .    .    .    ID=4852551;Name=essv12248301;Alias=ALU_umary_ALU_5055_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608502;submitter_variant_call_id=ALU_umary_ALU_5055_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    30230519    30230519    6    30230519    30230519    940:indel:0    .    .    .    ID=4855500;Name=essv12250240;Alias=PHASE3_V1_SV_759_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608507;submitter_variant_call_id=PHASE3_V1_SV_759_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    30416350    30416350    6    30416350    30416350    941:indel:0    .    .    .    ID=4858804;Name=essv12251581;Alias=PHASE3_V1_SV_760_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608510;submitter_variant_call_id=PHASE3_V1_SV_760_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    31275975    31275975    6    31279145    31279145    942:copy_number_loss:3170    .    .    .    ID=4869370;Name=essv12256672;Alias=BI_GS_CNV_6_31275976_31279146_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608549;Start_range=31275476,31275976;End_range=31279146,31279646;submitter_variant_call_id=BI_GS_CNV_6_31275976_31279146_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    31279416    31279416    6    31279416    31279416    943:mobile_element_insertion:0    .    .    .    ID=4870626;Name=essv12257967;Alias=SVA_umary_SVA_278_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608552;submitter_variant_call_id=SVA_umary_SVA_278_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    31292090    31292090    6    31293877    31293877    944:copy_number_loss:1787    .    .    .    ID=4872585;Name=essv12260413;Alias=BI_GS_DEL1_B2_P1098_218_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608555;Start_range=31292037,31292146;End_range=31293824,31293933;submitter_variant_call_id=BI_GS_DEL1_B2_P1098_218_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32449300    32449300    6    32449300    32449300    945:mobile_element_insertion:0    .    .    .    ID=4886906;Name=essv12265418;Alias=ALU_umary_ALU_5065_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608583;submitter_variant_call_id=ALU_umary_ALU_5065_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32454945    32454945    6    32478406    32478406    946:copy_number_loss:23461    .    .    .    ID=4888245;Name=essv12267289;Alias=BI_GS_DEL1_B4_P1099_107_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608584;Start_range=32454884,32455009;End_range=32478345,32478470;submitter_variant_call_id=BI_GS_DEL1_B4_P1099_107_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32461336    32461336    6    32468847    32468847    947:copy_number_loss:7511    .    .    .    ID=4890570;Name=essv12269695;Alias=BI_GS_DEL1_B2_P1099_323_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608585;Start_range=32461275,32461399;End_range=32468786,32468910;submitter_variant_call_id=BI_GS_DEL1_B2_P1099_323_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32494141    32494141    6    32494483    32494483    948:copy_number_loss:342    .    .    .    ID=4898348;Name=essv12271777;Alias=SI_BD_6494_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608588;Start_range=32494016,32494192;End_range=32494434,32494610;submitter_variant_call_id=SI_BD_6494_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32499299    32499299    6    32500805    32500805    949:copy_number_loss:1506    .    .    .    ID=4901186;Name=essv12273967;Alias=BI_GS_DEL1_B3_P1099_31_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608589;Start_range=32499300,32499301;End_range=32500806,32500807;submitter_variant_call_id=BI_GS_DEL1_B3_P1099_31_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32512659    32512659    6    32513018    32513018    950:copy_number_loss:359    .    .    .    ID=4904001;Name=essv12276213;Alias=BI_GS_DEL1_B1_P1099_367_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608593;Start_range=32512660,32512660;End_range=32513019,32513019;submitter_variant_call_id=BI_GS_DEL1_B1_P1099_367_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32514807    32514807    6    32516264    32516264    951:copy_number_loss:1457    .    .    .    ID=4906299;Name=essv12278836;Alias=EM_DL_DEL10922561_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608595;Start_range=32514658,32514958;End_range=32516115,32516415;submitter_variant_call_id=EM_DL_DEL10922561_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32604935    32604935    6    32616131    32616131    952:copy_number_loss:11196    .    .    .    ID=4922756;Name=essv12283708;Alias=DUP_gs_CNV_6_32604936_32616132_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608602;submitter_variant_call_id=DUP_gs_CNV_6_32604936_32616132_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32604935    32604935    6    32616131    32616131    953:copy_number_gain:11196    .    .    .    ID=4924301;Name=essv12285375;Alias=DUP_gs_CNV_6_32604936_32616132_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3608603;submitter_variant_call_id=DUP_gs_CNV_6_32604936_32616132_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32623532    32623532    6    32624603    32624603    954:copy_number_loss:1071    .    .    .    ID=4927529;Name=essv12288943;Alias=BI_GS_DEL1_B1_P1099_422_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608605;Start_range=32623519,32623547;End_range=32624590,32624618;submitter_variant_call_id=BI_GS_DEL1_B1_P1099_422_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32624895    32624895    6    32625862    32625862    955:copy_number_loss:967    .    .    .    ID=4928989;Name=essv12290892;Alias=BI_GS_DEL1_B5_P1099_530_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608606;Start_range=32624894,32624899;End_range=32625861,32625866;submitter_variant_call_id=BI_GS_DEL1_B5_P1099_530_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32676557    32676557    6    32677025    32677025    956:copy_number_loss:468    .    .    .    ID=4943868;Name=essv12295166;Alias=UW_VH_549_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608610;Start_range=32676098,32676558;End_range=32677026,32677461;submitter_variant_call_id=UW_VH_549_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32687171    32687171    6    32687171    32687171    957:mobile_element_insertion:0    .    .    .    ID=4946196;Name=essv12296787;Alias=ALU_umary_ALU_5076_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608611;submitter_variant_call_id=ALU_umary_ALU_5076_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32688594    32688594    6    32688594    32688594    958:mobile_element_insertion:0    .    .    .    ID=4948286;Name=essv12298106;Alias=ALU_umary_ALU_5077_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608612;submitter_variant_call_id=ALU_umary_ALU_5077_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32749237    32749237    6    32749550    32749550    959:copy_number_loss:313    .    .    .    ID=4954743;Name=essv12300121;Alias=BI_GS_DEL1_B4_P1099_174_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608614;Start_range=32749238,32749238;End_range=32749551,32749551;submitter_variant_call_id=BI_GS_DEL1_B4_P1099_174_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    32773434    32773434    6    32773434    32773434    960:mobile_element_insertion:0    .    .    .    ID=4957356;Name=essv12301590;Alias=ALU_umary_ALU_5079_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608615;submitter_variant_call_id=ALU_umary_ALU_5079_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    32778681    32778681    6    32779820    32779820    961:copy_number_loss:1139    .    .    .    ID=4958048;Name=essv12303410;Alias=UW_VH_5456_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608616;Start_range=32778298,32778682;End_range=32779821,32780294;submitter_variant_call_id=UW_VH_5456_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    33026720    33026720    6    33028604    33028604    962:copy_number_loss:1884    .    .    .    ID=4966717;Name=essv12305188;Alias=BI_GS_DEL1_B2_P1100_23_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608619;Start_range=33026721,33026721;End_range=33028605,33028605;submitter_variant_call_id=BI_GS_DEL1_B2_P1100_23_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    33030312    33030312    6    33030312    33030312    963:mobile_element_insertion:0    .    .    .    ID=4967233;Name=essv12306663;Alias=SVA_umary_SVA_282_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608620;submitter_variant_call_id=SVA_umary_SVA_282_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    33583079    33583079    6    33585983    33585983    964:copy_number_loss:2904    .    .    .    ID=4977752;Name=essv12311281;Alias=YL_CN_ASW_1494_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608638;Start_range=33582080,33583580;End_range=33585484,33586984;submitter_variant_call_id=YL_CN_ASW_1494_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    33857860    33857860    6    33857860    33857860    965:mobile_element_insertion:0    .    .    .    ID=4980892;Name=essv12312031;Alias=ALU_umary_ALU_5082_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608644;submitter_variant_call_id=ALU_umary_ALU_5082_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    33937732    33937732    6    33943211    33943211    966:copy_number_loss:5479    .    .    .    ID=4981301;Name=essv12312430;Alias=YL_CN_CHB_1456_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608648;Start_range=33936733,33938233;End_range=33942712,33944212;submitter_variant_call_id=YL_CN_CHB_1456_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    35754683    35754683    6    35766727    35766727    967:copy_number_gain:12044    .    .    .    ID=4994207;Name=essv12319179;Alias=DUP_gs_CNV_6_35754684_35766728_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3608692;submitter_variant_call_id=DUP_gs_CNV_6_35754684_35766728_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    40046908    40046908    6    40046908    40046908    968:mobile_element_insertion:0    .    .    .    ID=5005621;Name=essv12325098;Alias=ALU_umary_ALU_5107_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608764;submitter_variant_call_id=ALU_umary_ALU_5107_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    40170294    40170294    6    40170294    40170294    969:mobile_element_insertion:0    .    .    .    ID=5009307;Name=essv12326355;Alias=ALU_umary_ALU_5108_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608767;submitter_variant_call_id=ALU_umary_ALU_5108_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    40731428    40731428    6    40731428    40731428    970:mobile_element_insertion:0    .    .    .    ID=5011200;Name=essv12327070;Alias=ALU_umary_ALU_5110_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608781;submitter_variant_call_id=ALU_umary_ALU_5110_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    43614846    43614846    6    43614846    43614846    971:indel:0    .    .    .    ID=5018396;Name=essv12330593;Alias=PHASE3_V1_SV_771_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608816;submitter_variant_call_id=PHASE3_V1_SV_771_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    43895486    43895486    6    43895486    43895486    972:mobile_element_insertion:0    .    .    .    ID=5020277;Name=essv12331969;Alias=ALU_umary_ALU_5120_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608821;submitter_variant_call_id=ALU_umary_ALU_5120_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    45260478    45260478    6    45260478    45260478    973:mobile_element_insertion:0    .    .    .    ID=5025795;Name=essv12335043;Alias=ALU_umary_ALU_5132_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608862;submitter_variant_call_id=ALU_umary_ALU_5132_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    45610842    45610842    6    45610842    45610842    974:indel:0    .    .    .    ID=5029829;Name=essv12337080;Alias=PHASE3_V1_SV_773_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608864;submitter_variant_call_id=PHASE3_V1_SV_773_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    45852696    45852696    6    45852696    45852696    975:indel:0    .    .    .    ID=5033532;Name=essv12339033;Alias=PHASE3_V1_SV_774_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3608870;submitter_variant_call_id=PHASE3_V1_SV_774_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    46077620    46077620    6    46077620    46077620    976:mobile_element_insertion:0    .    .    .    ID=5036932;Name=essv12339754;Alias=ALU_umary_ALU_5134_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608876;submitter_variant_call_id=ALU_umary_ALU_5134_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    47708270    47708270    6    47708270    47708270    977:mobile_element_insertion:0    .    .    .    ID=5043264;Name=essv12343195;Alias=ALU_umary_ALU_5145_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608904;submitter_variant_call_id=ALU_umary_ALU_5145_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    48930366    48930366    6    48938307    48938307    978:copy_number_loss:7941    .    .    .    ID=5046198;Name=essv12344462;Alias=YL_CN_ASW_1511_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608931;Start_range=48929367,48930867;End_range=48937808,48939308;submitter_variant_call_id=YL_CN_ASW_1511_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    50756932    50756932    6    50756932    50756932    979:mobile_element_insertion:0    .    .    .    ID=5048236;Name=essv12345475;Alias=ALU_umary_ALU_5165_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608968;submitter_variant_call_id=ALU_umary_ALU_5165_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    51736108    51736108    6    51736804    51736804    980:copy_number_loss:696    .    .    .    ID=5052218;Name=essv12347992;Alias=BI_GS_DEL1_B3_P1118_37_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3608987;Start_range=51736109,51736109;End_range=51736805,51736805;submitter_variant_call_id=BI_GS_DEL1_B3_P1118_37_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    51739580    51739580    6    51739580    51739580    981:mobile_element_insertion:0    .    .    .    ID=5053872;Name=essv12349135;Alias=ALU_umary_ALU_5170_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3608988;submitter_variant_call_id=ALU_umary_ALU_5170_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    52691457    52691457    6    52691457    52691457    982:mobile_element_insertion:0    .    .    .    ID=5061582;Name=essv12353173;Alias=ALU_umary_ALU_5178_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609010;submitter_variant_call_id=ALU_umary_ALU_5178_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    53648757    53648757    6    53648757    53648757    983:mobile_element_insertion:0    .    .    .    ID=5070234;Name=essv12357914;Alias=ALU_umary_ALU_5184_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609036;submitter_variant_call_id=ALU_umary_ALU_5184_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    53928701    53928701    6    53934819    53934819    984:copy_number_loss:6118    .    .    .    ID=5075061;Name=essv12359547;Alias=UW_VH_1777_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609042;Start_range=53928381,53928702;End_range=53934820,53935217;submitter_variant_call_id=UW_VH_1777_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    55825923    55825923    6    55846715    55846715    985:copy_number_loss:20792    .    .    .    ID=5084655;Name=essv12363388;Alias=BI_GS_DEL1_B2_P1122_546_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609081;Start_range=55825917,55825931;End_range=55846709,55846723;submitter_variant_call_id=BI_GS_DEL1_B2_P1122_546_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    55843192    55843192    6    55846436    55846436    986:copy_number_loss:3244    .    .    .    ID=5084717;Name=essv12363438;Alias=BI_GS_DEL1_B1_P1122_649_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609083;Start_range=55843162,55843225;End_range=55846406,55846469;submitter_variant_call_id=BI_GS_DEL1_B1_P1122_649_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    56075979    56075979    6    56075979    56075979    987:indel:0    .    .    .    ID=5087545;Name=essv12365603;Alias=PHASE3_V1_SV_785_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3609091;submitter_variant_call_id=PHASE3_V1_SV_785_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    57205858    57205858    6    57340405    57340405    988:copy_number_gain:134547    .    .    .    ID=5094554;Name=essv12369179;Alias=DUP_uwash_chr6_57205859_57340406_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3609121;submitter_variant_call_id=DUP_uwash_chr6_57205859_57340406_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    57268495    57268495    6    57297685    57297685    989:copy_number_gain:29190    .    .    .    ID=5097152;Name=essv12371688;Alias=DUP_gs_CNV_6_57268496_57297686_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3609123;submitter_variant_call_id=DUP_gs_CNV_6_57268496_57297686_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    57444976    57444976    6    57444976    57444976    990:mobile_element_insertion:0    .    .    .    ID=5102283;Name=essv12374749;Alias=ALU_umary_ALU_5212_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609137;submitter_variant_call_id=ALU_umary_ALU_5212_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    57450652    57450652    6    57479093    57479093    991:copy_number_gain:28441    .    .    .    ID=5105098;Name=essv12376974;Alias=DUP_gs_CNV_6_57450653_57479094_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3609138;submitter_variant_call_id=DUP_gs_CNV_6_57450653_57479094_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    57465235    57465235    6    57465235    57465235    992:mobile_element_insertion:0    .    .    .    ID=5106410;Name=essv12378274;Alias=ALU_umary_ALU_5213_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609140;submitter_variant_call_id=ALU_umary_ALU_5213_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    57622955    57622955    6    57627964    57627964    993:copy_number_loss:5009    .    .    .    ID=5107425;Name=essv12379284;Alias=SI_BD_6665_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609147;Start_range=57622722,57623006;End_range=57627915,57628199;submitter_variant_call_id=SI_BD_6665_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    58399800    58399800    6    58533647    58533647    994:copy_number_gain:133847    .    .    .    ID=5116976;Name=essv12382938;Alias=DUP_uwash_chr6_58399801_58533648_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3609172;submitter_variant_call_id=DUP_uwash_chr6_58399801_58533648_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    58423748    58423748    6    58428879    58428879    995:copy_number_loss:5131    .    .    .    ID=5117791;Name=essv12383810;Alias=UW_VH_2058_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609175;Start_range=58423492,58423749;End_range=58428880,58429209;submitter_variant_call_id=UW_VH_2058_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    64667010    64667010    6    64668348    64668348    996:copy_number_loss:1338    .    .    .    ID=5137927;Name=essv12391016;Alias=BI_GS_DEL1_B2_P1131_400_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609272;Start_range=64667011,64667011;End_range=64668349,64668349;submitter_variant_call_id=BI_GS_DEL1_B2_P1131_400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    64836241    64836241    6    64836241    64836241    997:mobile_element_insertion:0    .    .    .    ID=5138805;Name=essv12391745;Alias=ALU_umary_ALU_5222_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609275;submitter_variant_call_id=ALU_umary_ALU_5222_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    66260135    66260135    6    66262100    66262100    998:copy_number_loss:1965    .    .    .    ID=5148500;Name=essv12395683;Alias=SI_BD_6703_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609304;Start_range=66260037,66260186;End_range=66262015,66262200;submitter_variant_call_id=SI_BD_6703_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    66399272    66399272    6    66404614    66404614    999:copy_number_loss:5342    .    .    .    ID=5151711;Name=essv12396749;Alias=BI_GS_CNV_6_66399273_66404615_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609306;Start_range=66398773,66399273;End_range=66404615,66405115;submitter_variant_call_id=BI_GS_CNV_6_66399273_66404615_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    66816129    66816129    6    66816129    66816129    1000:mobile_element_insertion:0    .    .    .    ID=5153556;Name=essv12398318;Alias=ALU_umary_ALU_5230_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609311;submitter_variant_call_id=ALU_umary_ALU_5230_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    67009227    67009227    6    67049032    67049032    1001:copy_number_loss:39805    .    .    .    ID=5154504;Name=essv12399048;Alias=YL_CN_PJL_1528_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609317;Start_range=67008228,67009728;End_range=67048533,67050033;submitter_variant_call_id=YL_CN_PJL_1528_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    67024955    67024955    6    67027284    67027284    1002:copy_number_loss:2329    .    .    .    ID=5154790;Name=essv12399292;Alias=BI_GS_DEL1_B5_P1134_20_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609319;Start_range=67024955,67024957;End_range=67027284,67027286;submitter_variant_call_id=BI_GS_DEL1_B5_P1134_20_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    67040805    67040805    6    67043181    67043181    1003:copy_number_loss:2376    .    .    .    ID=5155018;Name=essv12399962;Alias=UW_VH_13167_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609320;Start_range=67040413,67040806;End_range=67043182,67043535;submitter_variant_call_id=UW_VH_13167_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    68311310    68311310    6    68311310    68311310    1004:mobile_element_insertion:0    .    .    .    ID=5163451;Name=essv12402365;Alias=ALU_umary_ALU_5237_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609361;submitter_variant_call_id=ALU_umary_ALU_5237_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    68314067    68314067    6    68314067    68314067    1005:mobile_element_insertion:0    .    .    .    ID=5164965;Name=essv12404487;Alias=ALU_umary_ALU_5238_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609362;submitter_variant_call_id=ALU_umary_ALU_5238_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    68502445    68502445    6    68502445    68502445    1006:mobile_element_insertion:0    .    .    .    ID=5167754;Name=essv12405944;Alias=ALU_umary_ALU_5239_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609367;submitter_variant_call_id=ALU_umary_ALU_5239_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    70327732    70327732    6    70327732    70327732    1007:mobile_element_insertion:0    .    .    .    ID=5176864;Name=essv12410610;Alias=ALU_umary_ALU_5250_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609417;submitter_variant_call_id=ALU_umary_ALU_5250_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    71729315    71729315    6    71729315    71729315    1008:mobile_element_insertion:0    .    .    .    ID=5181583;Name=essv12412447;Alias=ALU_umary_ALU_5262_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609455;submitter_variant_call_id=ALU_umary_ALU_5262_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    72580495    72580495    6    72580495    72580495    1009:mobile_element_insertion:0    .    .    .    ID=5189053;Name=essv12415171;Alias=ALU_umary_ALU_5269_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609471;submitter_variant_call_id=ALU_umary_ALU_5269_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    72753378    72753378    6    72753378    72753378    1010:mobile_element_insertion:0    .    .    .    ID=5191837;Name=essv12417619;Alias=ALU_umary_ALU_5270_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609476;submitter_variant_call_id=ALU_umary_ALU_5270_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    72863590    72863590    6    72873662    72873662    1011:copy_number_loss:10072    .    .    .    ID=5192588;Name=essv12418296;Alias=YL_CN_STU_1469_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609482;Start_range=72862591,72864091;End_range=72873163,72874663;submitter_variant_call_id=YL_CN_STU_1469_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    74504854    74504854    6    74504854    74504854    1012:mobile_element_insertion:0    .    .    .    ID=5207043;Name=essv12422163;Alias=ALU_umary_ALU_5280_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609517;submitter_variant_call_id=ALU_umary_ALU_5280_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    74613606    74613606    6    74620404    74620404    1013:copy_number_loss:6798    .    .    .    ID=5209393;Name=essv12424481;Alias=UW_VH_20_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609523;Start_range=74613033,74613607;End_range=74620405,74620858;submitter_variant_call_id=UW_VH_20_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    74832471    74832471    6    74833460    74833460    1014:copy_number_loss:989    .    .    .    ID=5211159;Name=essv12425781;Alias=UW_VH_2590_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609531;Start_range=74832038,74832472;End_range=74833461,74833808;submitter_variant_call_id=UW_VH_2590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    74932704    74932704    6    74933070    74933070    1015:copy_number_loss:366    .    .    .    ID=5211971;Name=essv12427259;Alias=UW_VH_25122_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609540;Start_range=74932350,74932705;End_range=74933071,74933487;submitter_variant_call_id=UW_VH_25122_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    74932722    74932722    6    74932944    74932944    1016:copy_number_loss:222    .    .    .    ID=5214522;Name=essv12428973;Alias=UW_VH_567_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609541;Start_range=74932251,74932723;End_range=74932945,74933491;submitter_variant_call_id=UW_VH_567_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    77097463    77097463    6    77102642    77102642    1017:copy_number_loss:5179    .    .    .    ID=5225428;Name=essv12432054;Alias=BI_GS_DEL1_B5_P1144_101_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609602;Start_range=77097464,77097465;End_range=77102643,77102644;submitter_variant_call_id=BI_GS_DEL1_B5_P1144_101_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    77266453    77266453    6    77266453    77266453    1018:indel:0    .    .    .    ID=5227341;Name=essv12434186;Alias=PHASE3_V1_SV_799_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3609607;submitter_variant_call_id=PHASE3_V1_SV_799_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    77548620    77548620    6    77548620    77548620    1019:mobile_element_insertion:0    .    .    .    ID=5232697;Name=essv12437642;Alias=ALU_umary_ALU_5298_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609622;submitter_variant_call_id=ALU_umary_ALU_5298_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    77980648    77980648    6    77980648    77980648    1020:mobile_element_insertion:0    .    .    .    ID=5237136;Name=essv12439157;Alias=L1_umary_LINE1_1336_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609628;submitter_variant_call_id=L1_umary_LINE1_1336_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    78843183    78843183    6    78843183    78843183    1021:mobile_element_insertion:0    .    .    .    ID=5247190;Name=essv12444059;Alias=ALU_umary_ALU_5306_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609654;submitter_variant_call_id=ALU_umary_ALU_5306_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    78892807    78892807    6    79053429    79053429    1022:copy_number_loss:160622    .    .    .    ID=5248341;Name=essv12445221;Alias=DUP_uwash_chr6_78892808_79053430_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609657;submitter_variant_call_id=DUP_uwash_chr6_78892808_79053430_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    78967096    78967096    6    79036274    79036274    1023:copy_number_loss:69178    .    .    .    ID=5249352;Name=essv12446160;Alias=DUP_gs_CNV_6_78967097_79036275_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3609663;submitter_variant_call_id=DUP_gs_CNV_6_78967097_79036275_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    79723800    79723800    6    79723800    79723800    1024:mobile_element_insertion:0    .    .    .    ID=5251955;Name=essv12447856;Alias=ALU_umary_ALU_5314_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609677;submitter_variant_call_id=ALU_umary_ALU_5314_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    88698076    88698076    6    88698076    88698076    1025:mobile_element_insertion:0    .    .    .    ID=5270331;Name=essv12456904;Alias=ALU_umary_ALU_5356_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609874;submitter_variant_call_id=ALU_umary_ALU_5356_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    93576147    93576147    6    93576147    93576147    1026:mobile_element_insertion:0    .    .    .    ID=5283799;Name=essv12463698;Alias=ALU_umary_ALU_5380_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3609977;submitter_variant_call_id=ALU_umary_ALU_5380_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    94930782    94930782    6    94930782    94930782    1027:mobile_element_insertion:0    .    .    .    ID=5292622;Name=essv12466642;Alias=ALU_umary_ALU_5384_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610005;submitter_variant_call_id=ALU_umary_ALU_5384_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    95368372    95368372    6    95368372    95368372    1028:mobile_element_insertion:0    .    .    .    ID=5295391;Name=essv12469423;Alias=ALU_umary_ALU_5387_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610026;submitter_variant_call_id=ALU_umary_ALU_5387_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    96509179    96509179    6    96509179    96509179    1029:mobile_element_insertion:0    .    .    .    ID=5300396;Name=essv12471613;Alias=ALU_umary_ALU_5391_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610065;submitter_variant_call_id=ALU_umary_ALU_5391_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    98251339    98251339    6    98251339    98251339    1030:mobile_element_insertion:0    .    .    .    ID=5305377;Name=essv12474419;Alias=ALU_umary_ALU_5402_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610095;submitter_variant_call_id=ALU_umary_ALU_5402_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    100034557    100034557    6    100035367    100035367    1031:copy_number_loss:810    .    .    .    ID=5315586;Name=essv12478136;Alias=SI_BD_6915_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610124;Start_range=100034238,100034608;End_range=100035316,100035688;submitter_variant_call_id=SI_BD_6915_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    100328160    100328160    6    100328160    100328160    1032:mobile_element_insertion:0    .    .    .    ID=5317442;Name=essv12479319;Alias=ALU_umary_ALU_5413_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610129;submitter_variant_call_id=ALU_umary_ALU_5413_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    100407498    100407498    6    100407498    100407498    1033:mobile_element_insertion:0    .    .    .    ID=5318700;Name=essv12480494;Alias=ALU_umary_ALU_5415_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610134;submitter_variant_call_id=ALU_umary_ALU_5415_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    101934560    101934560    6    101939027    101939027    1034:copy_number_loss:4467    .    .    .    ID=5324758;Name=essv12483168;Alias=BI_GS_DEL1_B5_P1168_1008_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610164;Start_range=101934561,101934561;End_range=101939028,101939028;submitter_variant_call_id=BI_GS_DEL1_B5_P1168_1008_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    102846093    102846093    6    102846093    102846093    1035:mobile_element_insertion:0    .    .    .    ID=5331535;Name=essv12486850;Alias=L1_umary_LINE1_1370_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610192;submitter_variant_call_id=L1_umary_LINE1_1370_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    103737540    103737540    6    103763293    103763293    1036:copy_number_loss:25753    .    .    .    ID=5337314;Name=essv12489875;Alias=YL_CN_MXL_1282_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610216;Start_range=103736541,103738041;End_range=103762794,103764294;submitter_variant_call_id=YL_CN_MXL_1282_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    104350578    104350578    6    104350578    104350578    1037:mobile_element_insertion:0    .    .    .    ID=5343390;Name=essv12491539;Alias=ALU_umary_ALU_5443_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610230;submitter_variant_call_id=ALU_umary_ALU_5443_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    104490682    104490682    6    104490682    104490682    1038:mobile_element_insertion:0    .    .    .    ID=5345055;Name=essv12492749;Alias=ALU_umary_ALU_5445_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610233;submitter_variant_call_id=ALU_umary_ALU_5445_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    105260826    105260826    6    105263755    105263755    1039:copy_number_loss:2929    .    .    .    ID=5350090;Name=essv12496433;Alias=UW_VH_581_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610247;Start_range=105260408,105260827;End_range=105263756,105264269;submitter_variant_call_id=UW_VH_581_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    106357482    106357482    6    106357482    106357482    1040:indel:0    .    .    .    ID=5352804;Name=essv12497987;Alias=PHASE3_V1_SV_816_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3610259;submitter_variant_call_id=PHASE3_V1_SV_816_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    110102981    110102981    6    110102981    110102981    1041:mobile_element_insertion:0    .    .    .    ID=5358673;Name=essv12500672;Alias=ALU_umary_ALU_5467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610339;submitter_variant_call_id=ALU_umary_ALU_5467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    115788645    115788645    6    115788645    115788645    1042:mobile_element_insertion:0    .    .    .    ID=5376301;Name=essv12509574;Alias=ALU_umary_ALU_5495_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610457;submitter_variant_call_id=ALU_umary_ALU_5495_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    116307095    116307095    6    116307095    116307095    1043:mobile_element_insertion:0    .    .    .    ID=5379004;Name=essv12510690;Alias=ALU_umary_ALU_5500_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610467;submitter_variant_call_id=ALU_umary_ALU_5500_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    116898685    116898685    6    116898685    116898685    1044:mobile_element_insertion:0    .    .    .    ID=5382396;Name=essv12512493;Alias=ALU_umary_ALU_5504_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610474;submitter_variant_call_id=ALU_umary_ALU_5504_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    117780555    117780555    6    117780555    117780555    1045:indel:0    .    .    .    ID=5387370;Name=essv12515010;Alias=PHASE3_V1_SV_819_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3610493;submitter_variant_call_id=PHASE3_V1_SV_819_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    118626161    118626161    6    118626161    118626161    1046:mobile_element_insertion:0    .    .    .    ID=5392857;Name=essv12517863;Alias=ALU_umary_ALU_5509_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610508;submitter_variant_call_id=ALU_umary_ALU_5509_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    119012244    119012244    6    119013924    119013924    1047:copy_number_loss:1680    .    .    .    ID=5395823;Name=essv12518978;Alias=UW_VH_2789_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610523;Start_range=119011957,119012245;End_range=119013925,119014362;submitter_variant_call_id=UW_VH_2789_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    120380265    120380265    6    120380265    120380265    1048:mobile_element_insertion:0    .    .    .    ID=5401409;Name=essv12520663;Alias=ALU_umary_ALU_5522_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610553;submitter_variant_call_id=ALU_umary_ALU_5522_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    120568261    120568261    6    120568261    120568261    1049:mobile_element_insertion:0    .    .    .    ID=5403608;Name=essv12522666;Alias=ALU_umary_ALU_5525_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610558;submitter_variant_call_id=ALU_umary_ALU_5525_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    123647642    123647642    6    123647642    123647642    1050:mobile_element_insertion:0    .    .    .    ID=5420798;Name=essv12530296;Alias=ALU_umary_ALU_5544_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610627;submitter_variant_call_id=ALU_umary_ALU_5544_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    123647642    123647642    6    123647642    123647642    1051:mobile_element_insertion:0    .    .    .    ID=5421129;Name=essv12530746;Alias=L1_umary_LINE1_1394_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610628;submitter_variant_call_id=L1_umary_LINE1_1394_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    123853945    123853945    6    123853945    123853945    1052:mobile_element_insertion:0    .    .    .    ID=5421752;Name=essv12531242;Alias=L1_umary_LINE1_1395_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610634;submitter_variant_call_id=L1_umary_LINE1_1395_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    123924306    123924306    6    123924306    123924306    1053:indel:0    .    .    .    ID=5423040;Name=essv12532556;Alias=PHASE3_V1_SV_824_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3610637;submitter_variant_call_id=PHASE3_V1_SV_824_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    125421420    125421420    6    125421420    125421420    1054:mobile_element_insertion:0    .    .    .    ID=5430899;Name=essv12536676;Alias=ALU_umary_ALU_5557_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610679;submitter_variant_call_id=ALU_umary_ALU_5557_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    126423675    126423675    6    126423675    126423675    1055:mobile_element_insertion:0    .    .    .    ID=5436887;Name=essv12538626;Alias=ALU_umary_ALU_5562_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610705;submitter_variant_call_id=ALU_umary_ALU_5562_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    126468008    126468008    6    126468246    126468246    1056:copy_number_loss:238    .    .    .    ID=5437592;Name=essv12539858;Alias=UW_VH_589_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610706;Start_range=126467518,126468009;End_range=126468247,126468676;submitter_variant_call_id=UW_VH_589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    126623610    126623610    6    126623610    126623610    1057:mobile_element_insertion:0    .    .    .    ID=5438985;Name=essv12540697;Alias=L1_umary_LINE1_1402_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610710;submitter_variant_call_id=L1_umary_LINE1_1402_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    128827726    128827726    6    128829604    128829604    1058:copy_number_loss:1878    .    .    .    ID=5441284;Name=essv12541342;Alias=UW_VH_590_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610743;Start_range=128827489,128827727;End_range=128829605,128829908;submitter_variant_call_id=UW_VH_590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    129619209    129619209    6    129619209    129619209    1059:indel:0    .    .    .    ID=5448057;Name=essv12544040;Alias=PHASE3_V1_SV_829_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3610762;submitter_variant_call_id=PHASE3_V1_SV_829_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    129828235    129828235    6    129828235    129828235    1060:mobile_element_insertion:0    .    .    .    ID=5449135;Name=essv12545143;Alias=ALU_umary_ALU_5581_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610769;submitter_variant_call_id=ALU_umary_ALU_5581_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    130614797    130614797    6    130614797    130614797    1061:mobile_element_insertion:0    .    .    .    ID=5453127;Name=essv12547038;Alias=ALU_umary_ALU_5583_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610784;submitter_variant_call_id=ALU_umary_ALU_5583_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    131113278    131113278    6    131113278    131113278    1062:mobile_element_insertion:0    .    .    .    ID=5459462;Name=essv12549883;Alias=ALU_umary_ALU_5589_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610798;submitter_variant_call_id=ALU_umary_ALU_5589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    131418011    131418011    6    131418979    131418979    1063:copy_number_loss:968    .    .    .    ID=5462299;Name=essv12551563;Alias=BI_GS_DEL1_B1_P1198_405_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610804;Start_range=131418012,131418012;End_range=131418980,131418980;submitter_variant_call_id=BI_GS_DEL1_B1_P1198_405_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    131440528    131440528    6    131440528    131440528    1064:indel:0    .    .    .    ID=5463165;Name=essv12552416;Alias=PHASE3_V1_SV_831_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3610807;submitter_variant_call_id=PHASE3_V1_SV_831_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    132106589    132106589    6    132108811    132108811    1065:copy_number_loss:2222    .    .    .    ID=5464377;Name=essv12553172;Alias=UW_VH_2798_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610821;Start_range=132106272,132106590;End_range=132108812,132109173;submitter_variant_call_id=UW_VH_2798_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    132114230    132114230    6    132118558    132118558    1066:copy_number_loss:4328    .    .    .    ID=5464466;Name=essv12553250;Alias=UW_VH_2799_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610822;Start_range=132113893,132114231;End_range=132118559,132118862;submitter_variant_call_id=UW_VH_2799_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    132375190    132375190    6    132378993    132378993    1067:copy_number_loss:3803    .    .    .    ID=5465399;Name=essv12553375;Alias=UW_VH_19741_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610829;Start_range=132375089,132375191;End_range=132378994,132379128;submitter_variant_call_id=UW_VH_19741_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    132707464    132707464    6    132712438    132712438    1068:copy_number_loss:4974    .    .    .    ID=5466860;Name=essv12554289;Alias=UW_VH_4535_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610837;Start_range=132707036,132707465;End_range=132712439,132712678;submitter_variant_call_id=UW_VH_4535_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    133731770    133731770    6    133731770    133731770    1069:mobile_element_insertion:0    .    .    .    ID=5472527;Name=essv12556906;Alias=ALU_umary_ALU_5604_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610855;submitter_variant_call_id=ALU_umary_ALU_5604_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    134268951    134268951    6    134269718    134269718    1070:copy_number_loss:767    .    .    .    ID=5475487;Name=essv12558602;Alias=BI_GS_DEL1_B4_P1201_57_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610868;Start_range=134268951,134268953;End_range=134269718,134269720;submitter_variant_call_id=BI_GS_DEL1_B4_P1201_57_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    137313690    137313690    6    137314187    137314187    1071:copy_number_loss:497    .    .    .    ID=5486960;Name=essv12564686;Alias=BI_GS_DEL1_B1_P1204_268_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3610932;Start_range=137313691,137313691;End_range=137314188,137314188;submitter_variant_call_id=BI_GS_DEL1_B1_P1204_268_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    139294733    139294733    6    139294733    139294733    1072:mobile_element_insertion:0    .    .    .    ID=5491314;Name=essv12566118;Alias=ALU_umary_ALU_5628_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3610964;submitter_variant_call_id=ALU_umary_ALU_5628_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    141134050    141134050    6    141134050    141134050    1073:mobile_element_insertion:0    .    .    .    ID=5499605;Name=essv12570132;Alias=ALU_umary_ALU_5642_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611034;submitter_variant_call_id=ALU_umary_ALU_5642_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    141548585    141548585    6    141550029    141550029    1074:copy_number_loss:1444    .    .    .    ID=5503433;Name=essv12571942;Alias=BI_GS_DEL1_B4_P1208_126_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611051;Start_range=141548586,141548586;End_range=141550030,141550030;submitter_variant_call_id=BI_GS_DEL1_B4_P1208_126_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    141770868    141770868    6    141770868    141770868    1075:mobile_element_insertion:0    .    .    .    ID=5504569;Name=essv12572927;Alias=ALU_umary_ALU_5648_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611052;submitter_variant_call_id=ALU_umary_ALU_5648_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    142450109    142450109    6    142450109    142450109    1076:mobile_element_insertion:0    .    .    .    ID=5507358;Name=essv12574358;Alias=L1_umary_LINE1_1418_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611075;submitter_variant_call_id=L1_umary_LINE1_1418_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    143951374    143951374    6    143951374    143951374    1077:mobile_element_insertion:0    .    .    .    ID=5510043;Name=essv12575552;Alias=ALU_umary_ALU_5657_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611100;submitter_variant_call_id=ALU_umary_ALU_5657_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    148195807    148195807    6    148195807    148195807    1078:mobile_element_insertion:0    .    .    .    ID=5517329;Name=essv12579088;Alias=L1_umary_LINE1_1425_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611184;submitter_variant_call_id=L1_umary_LINE1_1425_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    151485894    151485894    6    151486929    151486929    1079:copy_number_loss:1035    .    .    .    ID=5524861;Name=essv12582366;Alias=UW_VH_11750_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611251;Start_range=151485454,151485895;End_range=151486930,151487454;submitter_variant_call_id=UW_VH_11750_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    153429855    153429855    6    153429855    153429855    1080:mobile_element_insertion:0    .    .    .    ID=5538427;Name=essv12588913;Alias=SVA_umary_SVA_315_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611294;submitter_variant_call_id=SVA_umary_SVA_315_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    155387305    155387305    6    155387305    155387305    1081:indel:0    .    .    .    ID=5551926;Name=essv12596111;Alias=PHASE3_V1_SV_845_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611340;submitter_variant_call_id=PHASE3_V1_SV_845_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    155438253    155438253    6    155438253    155438253    1082:mobile_element_insertion:0    .    .    .    ID=5552622;Name=essv12596850;Alias=ALU_umary_ALU_5709_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611342;submitter_variant_call_id=ALU_umary_ALU_5709_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    156092172    156092172    6    156092172    156092172    1083:indel:0    .    .    .    ID=5557523;Name=essv12598944;Alias=PHASE3_V1_SV_846_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611351;submitter_variant_call_id=PHASE3_V1_SV_846_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    157699891    157699891    6    157703259    157703259    1084:copy_number_loss:3368    .    .    .    ID=5565417;Name=essv12602429;Alias=BI_GS_DEL1_B2_P1224_443_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611375;Start_range=157699892,157699892;End_range=157703260,157703260;submitter_variant_call_id=BI_GS_DEL1_B2_P1224_443_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    157968752    157968752    6    157968752    157968752    1085:mobile_element_insertion:0    .    .    .    ID=5567461;Name=essv12604130;Alias=L1_umary_LINE1_1437_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611380;submitter_variant_call_id=L1_umary_LINE1_1437_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    159166301    159166301    6    159166301    159166301    1086:mobile_element_insertion:0    .    .    .    ID=5573280;Name=essv12606259;Alias=ALU_umary_ALU_5728_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611404;submitter_variant_call_id=ALU_umary_ALU_5728_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    159204430    159204430    6    159204430    159204430    1087:mobile_element_insertion:0    .    .    .    ID=5574320;Name=essv12607516;Alias=ALU_umary_ALU_5729_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611405;submitter_variant_call_id=ALU_umary_ALU_5729_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    160319648    160319648    6    160319648    160319648    1088:indel:0    .    .    .    ID=5581440;Name=essv12611275;Alias=PHASE3_V1_SV_850_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611424;submitter_variant_call_id=PHASE3_V1_SV_850_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    161336446    161336446    6    161336446    161336446    1089:mobile_element_insertion:0    .    .    .    ID=5593870;Name=essv12617191;Alias=ALU_umary_ALU_5732_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611452;submitter_variant_call_id=ALU_umary_ALU_5732_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    162181267    162181267    6    162181267    162181267    1090:mobile_element_insertion:0    .    .    .    ID=5598750;Name=essv12618969;Alias=L1_umary_LINE1_1438_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611468;submitter_variant_call_id=L1_umary_LINE1_1438_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    163013854    163013854    6    163013854    163013854    1091:mobile_element_insertion:0    .    .    .    ID=5603121;Name=essv12621703;Alias=ALU_umary_ALU_5742_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611560;submitter_variant_call_id=ALU_umary_ALU_5742_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    163814229    163814229    6    163814229    163814229    1092:mobile_element_insertion:0    .    .    .    ID=5608537;Name=essv12624719;Alias=ALU_umary_ALU_5746_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611577;submitter_variant_call_id=ALU_umary_ALU_5746_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    165186930    165186930    6    165186930    165186930    1093:mobile_element_insertion:0    .    .    .    ID=5614069;Name=essv12627075;Alias=ALU_umary_ALU_5750_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611606;submitter_variant_call_id=ALU_umary_ALU_5750_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    165724642    165724642    6    165732121    165732121    1094:copy_number_loss:7479    .    .    .    ID=5619297;Name=essv12629385;Alias=BI_GS_DEL1_B5_P1232_793_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611617;Start_range=165724642,165724645;End_range=165732121,165732124;submitter_variant_call_id=BI_GS_DEL1_B5_P1232_793_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    167124811    167124811    6    167124811    167124811    1095:mobile_element_insertion:0    .    .    .    ID=5632187;Name=essv12632931;Alias=ALU_umary_ALU_5759_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3611636;submitter_variant_call_id=ALU_umary_ALU_5759_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    167272485    167272485    6    167272485    167272485    1096:indel:0    .    .    .    ID=5638565;Name=essv12635574;Alias=PHASE3_V1_SV_855_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611639;submitter_variant_call_id=PHASE3_V1_SV_855_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    167488091    167488091    6    167489636    167489636    1097:copy_number_loss:1545    .    .    .    ID=5640638;Name=essv12637462;Alias=SI_BD_7306_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611645;Start_range=167487806,167488145;End_range=167489442,167489923;submitter_variant_call_id=SI_BD_7306_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    167488570    167488570    6    167488856    167488856    1098:copy_number_loss:286    .    .    .    ID=5641660;Name=essv12638900;Alias=BI_GS_DEL1_B1_P1234_474_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611646;Start_range=167488529,167488613;End_range=167488815,167488899;submitter_variant_call_id=BI_GS_DEL1_B1_P1234_474_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    167488658    167488658    6    167489083    167489083    1099:copy_number_loss:425    .    .    .    ID=5643556;Name=essv12640336;Alias=BI_GS_DEL1_B2_P1234_431_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611647;Start_range=167488621,167488698;End_range=167489046,167489123;submitter_variant_call_id=BI_GS_DEL1_B2_P1234_431_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    167569515    167569515    6    167727184    167727184    1100:copy_number_gain:157669    .    .    .    ID=5645489;Name=essv12642644;Alias=DUP_uwash_chr6_167569516_167727185_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3611650;submitter_variant_call_id=DUP_uwash_chr6_167569516_167727185_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    169774029    169774029    6    169774029    169774029    1101:indel:0    .    .    .    ID=5656644;Name=essv12648391;Alias=PHASE3_V1_SV_860_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611711;submitter_variant_call_id=PHASE3_V1_SV_860_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
6    170465430    170465430    6    170465430    170465430    1102:indel:0    .    .    .    ID=5667257;Name=essv12651253;Alias=PHASE3_V1_SV_862_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611725;submitter_variant_call_id=PHASE3_V1_SV_862_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
6    170744480    170744480    6    170744480    170744480    1103:indel:0    .    .    .    ID=5669657;Name=essv12655146;Alias=PHASE3_V1_SV_865_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611738;submitter_variant_call_id=PHASE3_V1_SV_865_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    904330    904330    7    904330    904330    1104:indel:0    .    .    .    ID=5682326;Name=essv12661388;Alias=PHASE3_V1_SV_868_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3611793;submitter_variant_call_id=PHASE3_V1_SV_868_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    1185069    1185069    7    1187664    1187664    1105:copy_number_loss:2595    .    .    .    ID=5687900;Name=essv12663741;Alias=BI_GS_DEL1_B1_P1240_104_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611800;Start_range=1185070,1185070;End_range=1187665,1187665;submitter_variant_call_id=BI_GS_DEL1_B1_P1240_104_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    1856000    1856000    7    1863596    1863596    1106:copy_number_loss:7596    .    .    .    ID=5693868;Name=essv12667025;Alias=BI_GS_DEL1_B2_P1240_640_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3611827;Start_range=1855996,1856007;End_range=1863592,1863603;submitter_variant_call_id=BI_GS_DEL1_B2_P1240_640_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    7583519    7583519    7    7584967    7584967    1107:copy_number_loss:1448    .    .    .    ID=5712809;Name=essv12675974;Alias=UW_VH_6814_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612090;Start_range=7583258,7583520;End_range=7584968,7585247;submitter_variant_call_id=UW_VH_6814_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    8019026    8019026    7    8019026    8019026    1108:mobile_element_insertion:0    .    .    .    ID=5713916;Name=essv12676747;Alias=L1_umary_LINE1_1448_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612099;submitter_variant_call_id=L1_umary_LINE1_1448_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    8698627    8698627    7    8698846    8698846    1109:copy_number_loss:219    .    .    .    ID=5718273;Name=essv12679111;Alias=BI_GS_DEL1_B3_P1247_39_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612116;Start_range=8698628,8698628;End_range=8698847,8698847;submitter_variant_call_id=BI_GS_DEL1_B3_P1247_39_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    10504230    10504230    7    10506239    10506239    1110:copy_number_loss:2009    .    .    .    ID=5726187;Name=essv12682214;Alias=YL_CN_ASW_1703_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612188;Start_range=10503231,10504731;End_range=10505740,10507240;submitter_variant_call_id=YL_CN_ASW_1703_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    13022049    13022049    7    13028603    13028603    1111:copy_number_loss:6554    .    .    .    ID=5728735;Name=essv12684012;Alias=UW_VH_2831_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612273;Start_range=13021794,13022050;End_range=13028604,13028842;submitter_variant_call_id=UW_VH_2831_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    13649222    13649222    7    13649222    13649222    1112:mobile_element_insertion:0    .    .    .    ID=5731562;Name=essv12685361;Alias=ALU_umary_ALU_5834_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612301;submitter_variant_call_id=ALU_umary_ALU_5834_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    15666285    15666285    7    15666285    15666285    1113:mobile_element_insertion:0    .    .    .    ID=5733068;Name=essv12686082;Alias=ALU_umary_ALU_5851_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612370;submitter_variant_call_id=ALU_umary_ALU_5851_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    15885458    15885458    7    15885879    15885879    1114:copy_number_loss:421    .    .    .    ID=5733485;Name=essv12686244;Alias=UW_VH_2888_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612377;Start_range=15885069,15885459;End_range=15885880,15886259;submitter_variant_call_id=UW_VH_2888_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    22202752    22202752    7    22202752    22202752    1115:indel:0    .    .    .    ID=5753187;Name=essv12695928;Alias=PHASE3_V1_SV_883_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612513;submitter_variant_call_id=PHASE3_V1_SV_883_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    22434786    22434786    7    22436760    22436760    1116:copy_number_loss:1974    .    .    .    ID=5757013;Name=essv12697991;Alias=UW_VH_11442_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612517;Start_range=22434084,22434787;End_range=22436761,22437211;submitter_variant_call_id=UW_VH_11442_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    22853491    22853491    7    22853491    22853491    1117:mobile_element_insertion:0    .    .    .    ID=5762722;Name=essv12700857;Alias=ALU_umary_ALU_5886_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612528;submitter_variant_call_id=ALU_umary_ALU_5886_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    23095966    23095966    7    23095966    23095966    1118:indel:0    .    .    .    ID=5767974;Name=essv12703025;Alias=PHASE3_V1_SV_884_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612533;submitter_variant_call_id=PHASE3_V1_SV_884_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    24038170    24038170    7    24040062    24040062    1119:copy_number_loss:1892    .    .    .    ID=5772701;Name=essv12705760;Alias=UW_VH_18963_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612558;Start_range=24037630,24038171;End_range=24040063,24040595;submitter_variant_call_id=UW_VH_18963_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    25059645    25059645    7    25059645    25059645    1120:mobile_element_insertion:0    .    .    .    ID=5779566;Name=essv12708939;Alias=ALU_umary_ALU_5904_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612589;submitter_variant_call_id=ALU_umary_ALU_5904_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    26137219    26137219    7    26145485    26145485    1121:copy_number_loss:8266    .    .    .    ID=5781437;Name=essv12710082;Alias=DUP_gs_CNV_7_26137220_26145486_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612618;submitter_variant_call_id=DUP_gs_CNV_7_26137220_26145486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    26900470    26900470    7    26900470    26900470    1122:indel:0    .    .    .    ID=5788305;Name=essv12712964;Alias=PHASE3_V1_SV_887_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612647;submitter_variant_call_id=PHASE3_V1_SV_887_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    28574293    28574293    7    28575146    28575146    1123:copy_number_loss:853    .    .    .    ID=5792133;Name=essv12715396;Alias=BI_GS_DEL1_B1_P1267_560_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612674;Start_range=28574294,28574294;End_range=28575147,28575147;submitter_variant_call_id=BI_GS_DEL1_B1_P1267_560_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    29688450    29688450    7    29690143    29690143    1124:copy_number_loss:1693    .    .    .    ID=5796724;Name=essv12717567;Alias=BI_GS_DEL1_B5_P1268_913_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612700;Start_range=29688451,29688452;End_range=29690144,29690145;submitter_variant_call_id=BI_GS_DEL1_B5_P1268_913_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    31315570    31315570    7    31318948    31318948    1125:copy_number_loss:3378    .    .    .    ID=5800439;Name=essv12719253;Alias=UW_VH_11171_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612718;Start_range=31315153,31315571;End_range=31318949,31319456;submitter_variant_call_id=UW_VH_11171_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    31590265    31590265    7    31591994    31591994    1126:copy_number_loss:1729    .    .    .    ID=5802007;Name=essv12720267;Alias=UW_VH_4132_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612721;Start_range=31589959,31590266;End_range=31591995,31592134;submitter_variant_call_id=UW_VH_4132_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    32774938    32774938    7    32777676    32777676    1127:copy_number_loss:2738    .    .    .    ID=5804799;Name=essv12721490;Alias=BI_GS_DEL1_B1_P1271_654_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612746;Start_range=32774939,32774939;End_range=32777677,32777677;submitter_variant_call_id=BI_GS_DEL1_B1_P1271_654_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    32831240    32831240    7    32831240    32831240    1128:mobile_element_insertion:0    .    .    .    ID=5805789;Name=essv12722117;Alias=ALU_umary_ALU_5939_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612748;submitter_variant_call_id=ALU_umary_ALU_5939_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    33195328    33195328    7    33195328    33195328    1129:mobile_element_insertion:0    .    .    .    ID=5808208;Name=essv12723326;Alias=ALU_umary_ALU_5942_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612762;submitter_variant_call_id=ALU_umary_ALU_5942_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    34087407    34087407    7    34087407    34087407    1130:indel:0    .    .    .    ID=5812163;Name=essv12725326;Alias=PHASE3_V1_SV_892_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612786;submitter_variant_call_id=PHASE3_V1_SV_892_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    35230069    35230069    7    35284659    35284659    1131:copy_number_gain:54590    .    .    .    ID=5820146;Name=essv12728739;Alias=DUP_uwash_chr7_35230070_35284660_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3612812;submitter_variant_call_id=DUP_uwash_chr7_35230070_35284660_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    35607981    35607981    7    35607981    35607981    1132:indel:0    .    .    .    ID=5824455;Name=essv12731288;Alias=PHASE3_V1_SV_895_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612815;submitter_variant_call_id=PHASE3_V1_SV_895_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    36441166    36441166    7    36441940    36441940    1133:copy_number_loss:774    .    .    .    ID=5833295;Name=essv12735724;Alias=EM_DL_DEL10995730_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612834;Start_range=36441017,36441317;End_range=36441791,36442091;submitter_variant_call_id=EM_DL_DEL10995730_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    36878879    36878879    7    36878879    36878879    1134:indel:0    .    .    .    ID=5838031;Name=essv12737730;Alias=PHASE3_V1_SV_897_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612841;submitter_variant_call_id=PHASE3_V1_SV_897_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    37836650    37836650    7    37836650    37836650    1135:mobile_element_insertion:0    .    .    .    ID=5841751;Name=essv12740071;Alias=ALU_umary_ALU_5967_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612863;submitter_variant_call_id=ALU_umary_ALU_5967_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    38209212    38209212    7    38209212    38209212    1136:mobile_element_insertion:0    .    .    .    ID=5845261;Name=essv12741563;Alias=ALU_umary_ALU_5970_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612867;submitter_variant_call_id=ALU_umary_ALU_5970_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    38388213    38388213    7    38397224    38397224    1137:copy_number_loss:9011    .    .    .    ID=5847037;Name=essv12742427;Alias=DUP_gs_CNV_7_38388214_38397225_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612874;submitter_variant_call_id=DUP_gs_CNV_7_38388214_38397225_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    38478177    38478177    7    38478177    38478177    1138:mobile_element_insertion:0    .    .    .    ID=5847689;Name=essv12742884;Alias=ALU_umary_ALU_5972_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612882;submitter_variant_call_id=ALU_umary_ALU_5972_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    38759714    38759714    7    38759714    38759714    1139:mobile_element_insertion:0    .    .    .    ID=5852935;Name=essv12745364;Alias=ALU_umary_ALU_5975_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612891;submitter_variant_call_id=ALU_umary_ALU_5975_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    39380342    39380342    7    39380342    39380342    1140:indel:0    .    .    .    ID=5857034;Name=essv12747340;Alias=PHASE3_V1_SV_899_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3612904;submitter_variant_call_id=PHASE3_V1_SV_899_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    39749708    39749708    7    39749708    39749708    1141:mobile_element_insertion:0    .    .    .    ID=5861655;Name=essv12749736;Alias=ALU_umary_ALU_5983_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612913;submitter_variant_call_id=ALU_umary_ALU_5983_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    39820095    39820095    7    39825203    39825203    1142:copy_number_loss:5108    .    .    .    ID=5862074;Name=essv12750042;Alias=BI_GS_DEL1_B4_P1278_196_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3612916;Start_range=39820078,39820115;End_range=39825186,39825223;submitter_variant_call_id=BI_GS_DEL1_B4_P1278_196_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    40879270    40879270    7    40880478    40880478    1143:inversion:1208    .    .    .    ID=5865269;Name=essv12751326;Alias=INV_delly_INV00092650_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3612935;Start_range=40879062,40879480;End_range=40880270,40880688;submitter_variant_call_id=INV_delly_INV00092650_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    42647659    42647659    7    42647659    42647659    1144:mobile_element_insertion:0    .    .    .    ID=5872948;Name=essv12755114;Alias=ALU_umary_ALU_5994_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3612973;submitter_variant_call_id=ALU_umary_ALU_5994_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    49725895    49725895    7    49725895    49725895    1145:mobile_element_insertion:0    .    .    .    ID=5899049;Name=essv12768043;Alias=L1_umary_LINE1_1503_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613114;submitter_variant_call_id=L1_umary_LINE1_1503_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    51594314    51594314    7    51598688    51598688    1146:copy_number_loss:4374    .    .    .    ID=5905541;Name=essv12771474;Alias=UW_VH_10840_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613141;Start_range=51593791,51594315;End_range=51598689,51599085;submitter_variant_call_id=UW_VH_10840_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    52520167    52520167    7    52520371    52520371    1147:copy_number_loss:204    .    .    .    ID=5912691;Name=essv12774874;Alias=BI_GS_DEL1_B5_P1291_589_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613164;Start_range=52520168,52520168;End_range=52520372,52520372;submitter_variant_call_id=BI_GS_DEL1_B5_P1291_589_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    52789471    52789471    7    52789471    52789471    1148:mobile_element_insertion:0    .    .    .    ID=5916221;Name=essv12776438;Alias=L1_umary_LINE1_1509_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613170;submitter_variant_call_id=L1_umary_LINE1_1509_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    53652515    53652515    7    53652515    53652515    1149:mobile_element_insertion:0    .    .    .    ID=5920281;Name=essv12778815;Alias=L1_umary_LINE1_1510_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613202;submitter_variant_call_id=L1_umary_LINE1_1510_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    54370331    54370331    7    54370331    54370331    1150:indel:0    .    .    .    ID=5921301;Name=essv12779317;Alias=PHASE3_V1_SV_912_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613214;submitter_variant_call_id=PHASE3_V1_SV_912_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    54668976    54668976    7    54669542    54669542    1151:copy_number_loss:566    .    .    .    ID=5924097;Name=essv12780731;Alias=BI_GS_DEL1_B4_P1293_139_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613224;Start_range=54668977,54668978;End_range=54669543,54669544;submitter_variant_call_id=BI_GS_DEL1_B4_P1293_139_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    54817063    54817063    7    54817063    54817063    1152:indel:0    .    .    .    ID=5927629;Name=essv12782215;Alias=PHASE3_V1_SV_913_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613227;submitter_variant_call_id=PHASE3_V1_SV_913_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    55676869    55676869    7    55677779    55677779    1153:copy_number_loss:910    .    .    .    ID=5931389;Name=essv12784293;Alias=BI_GS_DEL1_B4_P1294_169_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613245;Start_range=55676869,55676872;End_range=55677779,55677782;submitter_variant_call_id=BI_GS_DEL1_B4_P1294_169_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    55971783    55971783    7    55972147    55972147    1154:copy_number_loss:364    .    .    .    ID=5935699;Name=essv12786220;Alias=BI_GS_DEL1_B3_P1294_29_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613256;Start_range=55971784,55971784;End_range=55972148,55972148;submitter_variant_call_id=BI_GS_DEL1_B3_P1294_29_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    56244917    56244917    7    56244917    56244917    1155:mobile_element_insertion:0    .    .    .    ID=5939720;Name=essv12788077;Alias=ALU_umary_ALU_6061_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613262;submitter_variant_call_id=ALU_umary_ALU_6061_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    56435783    56435783    7    56438106    56438106    1156:copy_number_loss:2323    .    .    .    ID=5944031;Name=essv12790663;Alias=YL_CN_IBS_1466_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613269;Start_range=56434784,56436284;End_range=56437607,56439107;submitter_variant_call_id=YL_CN_IBS_1466_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    56761979    56761979    7    56769950    56769950    1157:copy_number_loss:7971    .    .    .    ID=5949375;Name=essv12793200;Alias=BI_GS_DEL1_B2_P1295_402_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613282;Start_range=56761980,56761980;End_range=56769951,56769951;submitter_variant_call_id=BI_GS_DEL1_B2_P1295_402_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    57957714    57957714    7    57959406    57959406    1158:copy_number_loss:1692    .    .    .    ID=5957239;Name=essv12796410;Alias=EM_DL_DEL101005203_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613318;Start_range=57957565,57957865;End_range=57959257,57959557;submitter_variant_call_id=EM_DL_DEL101005203_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    61971095    61971095    7    61975634    61975634    1159:copy_number_loss:4539    .    .    .    ID=5963150;Name=essv12801137;Alias=YL_CN_CDX_1416_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613345;Start_range=61970096,61971596;End_range=61975135,61976635;submitter_variant_call_id=YL_CN_CDX_1416_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    61973192    61973192    7    61975901    61975901    1160:copy_number_loss:2709    .    .    .    ID=5964381;Name=essv12803165;Alias=YL_CN_GWD_2347_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613346;Start_range=61972193,61973693;End_range=61975402,61976902;submitter_variant_call_id=YL_CN_GWD_2347_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    62002292    62002292    7    62004874    62004874    1161:copy_number_loss:2582    .    .    .    ID=5967203;Name=essv12805256;Alias=BI_GS_DEL1_B1_P1301_1_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613350;Start_range=62002289,62002297;End_range=62004871,62004879;submitter_variant_call_id=BI_GS_DEL1_B1_P1301_1_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    62483322    62483322    7    62675221    62675221    1162:copy_number_gain:191899    .    .    .    ID=5971893;Name=essv12809189;Alias=DUP_uwash_chr7_62483323_62675222_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3613378;submitter_variant_call_id=DUP_uwash_chr7_62483323_62675222_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    63880179    63880179    7    63880179    63880179    1163:mobile_element_insertion:0    .    .    .    ID=5984551;Name=essv12811125;Alias=ALU_umary_ALU_6074_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613415;submitter_variant_call_id=ALU_umary_ALU_6074_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    64718382    64718382    7    64722247    64722247    1164:copy_number_loss:3865    .    .    .    ID=5989113;Name=essv12814172;Alias=DUP_gs_CNV_7_64718383_64722248_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613446;submitter_variant_call_id=DUP_gs_CNV_7_64718383_64722248_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    64853214    64853214    7    64853214    64853214    1165:indel:0    .    .    .    ID=5990233;Name=essv12815020;Alias=PHASE3_V1_SV_920_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613460;submitter_variant_call_id=PHASE3_V1_SV_920_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    65316655    65316655    7    65317126    65317126    1166:copy_number_loss:471    .    .    .    ID=5993232;Name=essv12816340;Alias=BI_GS_DEL1_B5_P1304_126_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613490;Start_range=65316652,65316661;End_range=65317123,65317132;submitter_variant_call_id=BI_GS_DEL1_B5_P1304_126_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    65597007    65597007    7    65597007    65597007    1167:indel:0    .    .    .    ID=5996004;Name=essv12818512;Alias=PHASE3_V1_SV_923_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613501;submitter_variant_call_id=PHASE3_V1_SV_923_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    66319735    66319735    7    66319735    66319735    1168:mobile_element_insertion:0    .    .    .    ID=6001145;Name=essv12819529;Alias=ALU_umary_ALU_6083_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613525;submitter_variant_call_id=ALU_umary_ALU_6083_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    66462146    66462146    7    66582157    66582157    1169:copy_number_gain:120011    .    .    .    ID=6003201;Name=essv12821488;Alias=DUP_uwash_chr7_66462147_66582158_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3613534;submitter_variant_call_id=DUP_uwash_chr7_66462147_66582158_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    66581035    66581035    7    66732916    66732916    1170:copy_number_gain:151881    .    .    .    ID=6005185;Name=essv12824063;Alias=DUP_uwash_chr7_66581036_66732917_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3613539;submitter_variant_call_id=DUP_uwash_chr7_66581036_66732917_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    66697507    66697507    7    66699311    66699311    1171:copy_number_loss:1804    .    .    .    ID=6007395;Name=essv12825689;Alias=BI_GS_DEL1_B5_P1305_554_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613543;Start_range=66697508,66697508;End_range=66699312,66699312;submitter_variant_call_id=BI_GS_DEL1_B5_P1305_554_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    67042075    67042075    7    67045140    67045140    1172:copy_number_gain:3065    .    .    .    ID=6011276;Name=essv12826509;Alias=DUP_gs_CNV_7_67042076_67045141_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3613555;submitter_variant_call_id=DUP_gs_CNV_7_67042076_67045141_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    68758440    68758440    7    68758440    68758440    1173:mobile_element_insertion:0    .    .    .    ID=6016022;Name=essv12827474;Alias=ALU_umary_ALU_6092_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613588;submitter_variant_call_id=ALU_umary_ALU_6092_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    70188701    70188701    7    70188701    70188701    1174:mobile_element_insertion:0    .    .    .    ID=6019322;Name=essv12828873;Alias=L1_umary_LINE1_1523_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613609;submitter_variant_call_id=L1_umary_LINE1_1523_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    71202529    71202529    7    71202529    71202529    1175:indel:0    .    .    .    ID=6022646;Name=essv12831258;Alias=PHASE3_V1_SV_925_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613636;submitter_variant_call_id=PHASE3_V1_SV_925_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    71211919    71211919    7    71212965    71212965    1176:copy_number_loss:1046    .    .    .    ID=6025849;Name=essv12833588;Alias=UW_VH_15640_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613638;Start_range=71211410,71211920;End_range=71212966,71213519;submitter_variant_call_id=UW_VH_15640_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    71999313    71999313    7    72050139    72050139    1177:copy_number_gain:50826    .    .    .    ID=6033197;Name=essv12836212;Alias=DUP_uwash_chr7_71999314_72050140_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3613659;submitter_variant_call_id=DUP_uwash_chr7_71999314_72050140_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    72019685    72019685    7    72019685    72019685    1178:indel:0    .    .    .    ID=6035628;Name=essv12838663;Alias=PHASE3_V1_SV_926_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613661;submitter_variant_call_id=PHASE3_V1_SV_926_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    72270262    72270262    7    72275845    72275845    1179:copy_number_loss:5583    .    .    .    ID=6037560;Name=essv12840435;Alias=BI_GS_DEL1_B1_P1311_137_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613671;Start_range=72270263,72270263;End_range=72275846,72275846;submitter_variant_call_id=BI_GS_DEL1_B1_P1311_137_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    73549764    73549764    7    73550954    73550954    1180:copy_number_loss:1190    .    .    .    ID=6044042;Name=essv12842560;Alias=UW_VH_643_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613699;Start_range=73549316,73549765;End_range=73550955,73551423;submitter_variant_call_id=UW_VH_643_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    73828492    73828492    7    73831270    73831270    1181:copy_number_loss:2778    .    .    .    ID=6047059;Name=essv12844771;Alias=UW_VH_14202_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613707;Start_range=73827938,73828493;End_range=73831271,73831733;submitter_variant_call_id=UW_VH_14202_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    74772349    74772349    7    74774219    74774219    1182:copy_number_loss:1870    .    .    .    ID=6054191;Name=essv12847256;Alias=UW_VH_25441_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613721;Start_range=74772312,74772350;End_range=74774220,74774261;submitter_variant_call_id=UW_VH_25441_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    76567223    76567223    7    76567223    76567223    1183:mobile_element_insertion:0    .    .    .    ID=6064805;Name=essv12854489;Alias=ALU_umary_ALU_6114_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613783;submitter_variant_call_id=ALU_umary_ALU_6114_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    76870543    76870543    7    76870796    76870796    1184:copy_number_loss:253    .    .    .    ID=6069182;Name=essv12856941;Alias=UW_VH_646_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613794;Start_range=76870080,76870544;End_range=76870797,76871308;submitter_variant_call_id=UW_VH_646_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    78127083    78127083    7    78127083    78127083    1185:indel:0    .    .    .    ID=6077406;Name=essv12859616;Alias=PHASE3_V1_SV_928_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613819;submitter_variant_call_id=PHASE3_V1_SV_928_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    80632650    80632650    7    80632650    80632650    1186:indel:0    .    .    .    ID=6082654;Name=essv12863477;Alias=PHASE3_V1_SV_932_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613876;submitter_variant_call_id=PHASE3_V1_SV_932_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    81358340    81358340    7    81358608    81358608    1187:copy_number_loss:268    .    .    .    ID=6090796;Name=essv12866520;Alias=BI_GS_DEL1_B3_P1320_15_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613891;Start_range=81358341,81358341;End_range=81358609,81358609;submitter_variant_call_id=BI_GS_DEL1_B3_P1320_15_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    81441545    81441545    7    81442494    81442494    1188:copy_number_loss:949    .    .    .    ID=6091929;Name=essv12868423;Alias=SI_BD_7957_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613892;Start_range=81441266,81441596;End_range=81442445,81442775;submitter_variant_call_id=SI_BD_7957_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    82430524    82430524    7    82430524    82430524    1189:mobile_element_insertion:0    .    .    .    ID=6099697;Name=essv12870752;Alias=ALU_umary_ALU_6148_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613916;submitter_variant_call_id=ALU_umary_ALU_6148_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    82851755    82851755    7    82851755    82851755    1190:mobile_element_insertion:0    .    .    .    ID=6101918;Name=essv12871945;Alias=ALU_umary_ALU_6151_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613928;submitter_variant_call_id=ALU_umary_ALU_6151_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    82910895    82910895    7    82910895    82910895    1191:indel:0    .    .    .    ID=6103522;Name=essv12872934;Alias=PHASE3_V1_SV_934_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3613930;submitter_variant_call_id=PHASE3_V1_SV_934_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    82947152    82947152    7    82947152    82947152    1192:mobile_element_insertion:0    .    .    .    ID=6104399;Name=essv12873786;Alias=ALU_umary_ALU_6152_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613931;submitter_variant_call_id=ALU_umary_ALU_6152_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    83050174    83050174    7    83051200    83051200    1193:copy_number_loss:1026    .    .    .    ID=6105250;Name=essv12874610;Alias=BI_GS_DEL1_B4_P1322_13_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3613935;Start_range=83050175,83050175;End_range=83051201,83051201;submitter_variant_call_id=BI_GS_DEL1_B4_P1322_13_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    84901724    84901724    7    84901724    84901724    1194:mobile_element_insertion:0    .    .    .    ID=6111711;Name=essv12876564;Alias=L1_umary_LINE1_1534_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613985;submitter_variant_call_id=L1_umary_LINE1_1534_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    85044750    85044750    7    85044750    85044750    1195:mobile_element_insertion:0    .    .    .    ID=6112848;Name=essv12878080;Alias=L1_umary_LINE1_1535_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3613993;submitter_variant_call_id=L1_umary_LINE1_1535_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    85860677    85860677    7    85860677    85860677    1196:mobile_element_insertion:0    .    .    .    ID=6116674;Name=essv12878647;Alias=ALU_umary_ALU_6171_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614014;submitter_variant_call_id=ALU_umary_ALU_6171_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    86303596    86303596    7    86303596    86303596    1197:mobile_element_insertion:0    .    .    .    ID=6117089;Name=essv12878833;Alias=ALU_umary_ALU_6172_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614019;submitter_variant_call_id=ALU_umary_ALU_6172_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    88380350    88380350    7    88380350    88380350    1198:mobile_element_insertion:0    .    .    .    ID=6120505;Name=essv12880612;Alias=ALU_umary_ALU_6185_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614054;submitter_variant_call_id=ALU_umary_ALU_6185_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    88790931    88790931    7    88790931    88790931    1199:indel:0    .    .    .    ID=6122315;Name=essv12881749;Alias=PHASE3_V1_SV_940_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614067;submitter_variant_call_id=PHASE3_V1_SV_940_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    89810409    89810409    7    89812601    89812601    1200:copy_number_loss:2192    .    .    .    ID=6125415;Name=essv12883499;Alias=BI_GS_DEL1_B1_P1328_640_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614103;Start_range=89810410,89810410;End_range=89812602,89812602;submitter_variant_call_id=BI_GS_DEL1_B1_P1328_640_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    89830435    89830435    7    89830435    89830435    1201:indel:0    .    .    .    ID=6126708;Name=essv12885686;Alias=PHASE3_V1_SV_942_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614104;submitter_variant_call_id=PHASE3_V1_SV_942_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    91214110    91214110    7    91220933    91220933    1202:copy_number_loss:6823    .    .    .    ID=6135237;Name=essv12888461;Alias=YL_CN_CDX_1479_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614123;Start_range=91213111,91214611;End_range=91220434,91221934;submitter_variant_call_id=YL_CN_CDX_1479_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    91751551    91751551    7    91751551    91751551    1203:mobile_element_insertion:0    .    .    .    ID=6139021;Name=essv12890148;Alias=ALU_umary_ALU_6200_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614135;submitter_variant_call_id=ALU_umary_ALU_6200_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    93357392    93357392    7    93357392    93357392    1204:mobile_element_insertion:0    .    .    .    ID=6143993;Name=essv12893403;Alias=ALU_umary_ALU_6208_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614170;submitter_variant_call_id=ALU_umary_ALU_6208_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    93416960    93416960    7    93422983    93422983    1205:copy_number_loss:6023    .    .    .    ID=6145787;Name=essv12895096;Alias=UW_VH_659_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614172;Start_range=93416371,93416961;End_range=93422984,93423513;submitter_variant_call_id=UW_VH_659_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    93541823    93541823    7    93542539    93542539    1206:copy_number_loss:716    .    .    .    ID=6147921;Name=essv12897121;Alias=BI_GS_DEL1_B3_P1332_24_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614174;Start_range=93541824,93541824;End_range=93542540,93542540;submitter_variant_call_id=BI_GS_DEL1_B3_P1332_24_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    94779064    94779064    7    94779064    94779064    1207:mobile_element_insertion:0    .    .    .    ID=6156190;Name=essv12898301;Alias=ALU_umary_ALU_6215_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614190;submitter_variant_call_id=ALU_umary_ALU_6215_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    95101191    95101191    7    95101191    95101191    1208:mobile_element_insertion:0    .    .    .    ID=6158251;Name=essv12900462;Alias=ALU_umary_ALU_6218_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614195;submitter_variant_call_id=ALU_umary_ALU_6218_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    96543285    96543285    7    96546588    96546588    1209:copy_number_loss:3303    .    .    .    ID=6162698;Name=essv12901997;Alias=UW_VH_1796_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614220;Start_range=96542823,96543286;End_range=96546589,96546993;submitter_variant_call_id=UW_VH_1796_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    97067537    97067537    7    97067537    97067537    1210:mobile_element_insertion:0    .    .    .    ID=6164823;Name=essv12903228;Alias=ALU_umary_ALU_6231_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614232;submitter_variant_call_id=ALU_umary_ALU_6231_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    97395288    97395288    7    97402640    97402640    1211:copy_number_loss:7352    .    .    .    ID=6166346;Name=essv12904252;Alias=UW_VH_2278_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614241;Start_range=97394899,97395289;End_range=97402641,97403021;submitter_variant_call_id=UW_VH_2278_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    101001252    101001252    7    101005498    101005498    1212:copy_number_loss:4246    .    .    .    ID=6180298;Name=essv12910094;Alias=BI_GS_DEL1_B4_P1340_1_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614329;Start_range=101001253,101001254;End_range=101005499,101005500;submitter_variant_call_id=BI_GS_DEL1_B4_P1340_1_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    105466070    105466070    7    105466070    105466070    1213:mobile_element_insertion:0    .    .    .    ID=6188555;Name=essv12914391;Alias=ALU_umary_ALU_6256_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614434;submitter_variant_call_id=ALU_umary_ALU_6256_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    105564471    105564471    7    105564471    105564471    1214:mobile_element_insertion:0    .    .    .    ID=6189987;Name=essv12915592;Alias=ALU_umary_ALU_6257_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614435;submitter_variant_call_id=ALU_umary_ALU_6257_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    107829262    107829262    7    107829262    107829262    1215:mobile_element_insertion:0    .    .    .    ID=6199151;Name=essv12920549;Alias=L1_umary_LINE1_1566_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614471;submitter_variant_call_id=L1_umary_LINE1_1566_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    108325677    108325677    7    108325677    108325677    1216:mobile_element_insertion:0    .    .    .    ID=6203061;Name=essv12921910;Alias=L1_umary_LINE1_1567_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614478;submitter_variant_call_id=L1_umary_LINE1_1567_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    109078025    109078025    7    109078025    109078025    1217:mobile_element_insertion:0    .    .    .    ID=6206066;Name=essv12922826;Alias=ALU_umary_ALU_6278_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614497;submitter_variant_call_id=ALU_umary_ALU_6278_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    109283351    109283351    7    109283351    109283351    1218:mobile_element_insertion:0    .    .    .    ID=6207051;Name=essv12923807;Alias=ALU_umary_ALU_6283_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614504;submitter_variant_call_id=ALU_umary_ALU_6283_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    110181926    110181926    7    110188431    110188431    1219:copy_number_loss:6505    .    .    .    ID=6212064;Name=essv12926077;Alias=UW_VH_15286_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614525;Start_range=110181488,110181927;End_range=110188432,110188874;submitter_variant_call_id=UW_VH_15286_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    112032080    112032080    7    112032080    112032080    1220:indel:0    .    .    .    ID=6220541;Name=essv12930287;Alias=PHASE3_V1_SV_958_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614622;submitter_variant_call_id=PHASE3_V1_SV_958_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    116366217    116366217    7    116366217    116366217    1221:indel:0    .    .    .    ID=6231470;Name=essv12936381;Alias=PHASE3_V1_SV_964_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614699;submitter_variant_call_id=PHASE3_V1_SV_964_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    118083313    118083313    7    118083313    118083313    1222:mobile_element_insertion:0    .    .    .    ID=6239329;Name=essv12939818;Alias=ALU_umary_ALU_6320_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614737;submitter_variant_call_id=ALU_umary_ALU_6320_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    118333970    118333970    7    118333970    118333970    1223:indel:0    .    .    .    ID=6241355;Name=essv12941902;Alias=PHASE3_V1_SV_966_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614743;submitter_variant_call_id=PHASE3_V1_SV_966_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    120290161    120290161    7    120291381    120291381    1224:copy_number_loss:1220    .    .    .    ID=6254652;Name=essv12947253;Alias=UW_VH_3084_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614805;Start_range=120289667,120290162;End_range=120291382,120291920;submitter_variant_call_id=UW_VH_3084_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    124273366    124273366    7    124273366    124273366    1225:indel:0    .    .    .    ID=6260115;Name=essv12949478;Alias=PHASE3_V1_SV_967_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614876;submitter_variant_call_id=PHASE3_V1_SV_967_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    126045886    126045886    7    126051449    126051449    1226:copy_number_loss:5563    .    .    .    ID=6269702;Name=essv12955476;Alias=UW_VH_14593_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614935;Start_range=126045440,126045887;End_range=126051450,126051888;submitter_variant_call_id=UW_VH_14593_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    126297198    126297198    7    126297198    126297198    1227:indel:0    .    .    .    ID=6273207;Name=essv12957626;Alias=PHASE3_V1_SV_969_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614937;submitter_variant_call_id=PHASE3_V1_SV_969_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    126775610    126775610    7    126775610    126775610    1228:indel:0    .    .    .    ID=6280319;Name=essv12960629;Alias=PHASE3_V1_SV_970_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3614950;submitter_variant_call_id=PHASE3_V1_SV_970_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    127214966    127214966    7    127217987    127217987    1229:copy_number_loss:3021    .    .    .    ID=6285277;Name=essv12962438;Alias=UW_VH_11627_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614957;Start_range=127214405,127214967;End_range=127217988,127218462;submitter_variant_call_id=UW_VH_11627_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    127929332    127929332    7    127929332    127929332    1230:mobile_element_insertion:0    .    .    .    ID=6288795;Name=essv12964273;Alias=ALU_umary_ALU_6383_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614967;submitter_variant_call_id=ALU_umary_ALU_6383_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    128150842    128150842    7    128150842    128150842    1231:mobile_element_insertion:0    .    .    .    ID=6289522;Name=essv12965007;Alias=ALU_umary_ALU_6385_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3614972;submitter_variant_call_id=ALU_umary_ALU_6385_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    128552552    128552552    7    128553543    128553543    1232:copy_number_loss:991    .    .    .    ID=6292864;Name=essv12966282;Alias=SI_BD_8186_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3614991;Start_range=128552447,128552620;End_range=128553494,128553650;submitter_variant_call_id=SI_BD_8186_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    129157178    129157178    7    129157178    129157178    1233:mobile_element_insertion:0    .    .    .    ID=6294965;Name=essv12968330;Alias=ALU_umary_ALU_6392_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615001;submitter_variant_call_id=ALU_umary_ALU_6392_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    129433473    129433473    7    129433473    129433473    1234:indel:0    .    .    .    ID=6299404;Name=essv12970931;Alias=PHASE3_V1_SV_971_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615006;submitter_variant_call_id=PHASE3_V1_SV_971_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    131524329    131524329    7    131524329    131524329    1235:mobile_element_insertion:0    .    .    .    ID=6306532;Name=essv12972621;Alias=ALU_umary_ALU_6400_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615048;submitter_variant_call_id=ALU_umary_ALU_6400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    131851125    131851125    7    131851125    131851125    1236:mobile_element_insertion:0    .    .    .    ID=6307528;Name=essv12973294;Alias=ALU_umary_ALU_6401_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615055;submitter_variant_call_id=ALU_umary_ALU_6401_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    138504458    138504458    7    138504458    138504458    1237:mobile_element_insertion:0    .    .    .    ID=6325021;Name=essv12981767;Alias=ALU_umary_ALU_6440_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615202;submitter_variant_call_id=ALU_umary_ALU_6440_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    140189248    140189248    7    140190275    140190275    1238:copy_number_loss:1027    .    .    .    ID=6328277;Name=essv12984197;Alias=UW_VH_2076_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615234;Start_range=140188885,140189249;End_range=140190276,140190635;submitter_variant_call_id=UW_VH_2076_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    141765306    141765306    7    141792848    141792848    1239:copy_number_loss:27542    .    .    .    ID=6334235;Name=essv12986410;Alias=DUP_gs_CNV_7_141765307_141792849_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615267;submitter_variant_call_id=DUP_gs_CNV_7_141765307_141792849_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    141786613    141786613    7    141790766    141790766    1240:copy_number_loss:4153    .    .    .    ID=6334947;Name=essv12986941;Alias=UW_VH_6655_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615269;Start_range=141786444,141786614;End_range=141790767,141791146;submitter_variant_call_id=UW_VH_6655_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    142360543    142360543    7    142362010    142362010    1241:copy_number_loss:1467    .    .    .    ID=6337590;Name=essv12988968;Alias=UW_VH_2972_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615285;Start_range=142360096,142360544;End_range=142362011,142362474;submitter_variant_call_id=UW_VH_2972_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    143543597    143543597    7    143560592    143560592    1242:copy_number_gain:16995    .    .    .    ID=6345199;Name=essv12994063;Alias=DUP_gs_CNV_7_143543598_143560593_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3615309;submitter_variant_call_id=DUP_gs_CNV_7_143543598_143560593_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    147585789    147585789    7    147585789    147585789    1243:mobile_element_insertion:0    .    .    .    ID=6357526;Name=essv12999020;Alias=ALU_umary_ALU_6482_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615404;submitter_variant_call_id=ALU_umary_ALU_6482_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    148072909    148072909    7    148076326    148076326    1244:copy_number_loss:3417    .    .    .    ID=6360923;Name=essv13001042;Alias=UW_VH_11597_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615412;Start_range=148072424,148072910;End_range=148076327,148076882;submitter_variant_call_id=UW_VH_11597_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    148111591    148111591    7    148111591    148111591    1245:indel:0    .    .    .    ID=6362994;Name=essv13003045;Alias=PHASE3_V1_SV_990_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615414;submitter_variant_call_id=PHASE3_V1_SV_990_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    148178645    148178645    7    148178645    148178645    1246:mobile_element_insertion:0    .    .    .    ID=6363560;Name=essv13003690;Alias=ALU_umary_ALU_6486_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615415;submitter_variant_call_id=ALU_umary_ALU_6486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    148724735    148724735    7    148724735    148724735    1247:indel:0    .    .    .    ID=6367899;Name=essv13003775;Alias=PHASE3_V1_SV_991_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615424;submitter_variant_call_id=PHASE3_V1_SV_991_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    149961202    149961202    7    149992031    149992031    1248:copy_number_gain:30829    .    .    .    ID=6371333;Name=essv13007863;Alias=DUP_uwash_chr7_149961203_149992032_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3615455;submitter_variant_call_id=DUP_uwash_chr7_149961203_149992032_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    150582274    150582274    7    150582274    150582274    1249:mobile_element_insertion:0    .    .    .    ID=6381114;Name=essv13010863;Alias=ALU_umary_ALU_6493_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615473;submitter_variant_call_id=ALU_umary_ALU_6493_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    151230199    151230199    7    151231842    151231842    1250:copy_number_loss:1643    .    .    .    ID=6386385;Name=essv13013364;Alias=UW_VH_3407_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615483;Start_range=151229797,151230200;End_range=151231843,151232219;submitter_variant_call_id=UW_VH_3407_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    152511399    152511399    7    152546464    152546464    1251:copy_number_gain:35065    .    .    .    ID=6392143;Name=essv13017753;Alias=DUP_uwash_chr7_152511400_152546465_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3615529;submitter_variant_call_id=DUP_uwash_chr7_152511400_152546465_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    153321861    153321861    7    153321861    153321861    1252:indel:0    .    .    .    ID=6402656;Name=essv13021933;Alias=PHASE3_V1_SV_998_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615570;submitter_variant_call_id=PHASE3_V1_SV_998_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    153646703    153646703    7    153947906    153947906    1253:copy_number_gain:301203    .    .    .    ID=6408707;Name=essv13024683;Alias=DUP_uwash_chr7_153646703_153947907_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3615583;submitter_variant_call_id=DUP_uwash_chr7_153646703_153947907_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    153966049    153966049    7    153966049    153966049    1254:mobile_element_insertion:0    .    .    .    ID=6413386;Name=essv13027119;Alias=ALU_umary_ALU_6501_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615596;submitter_variant_call_id=ALU_umary_ALU_6501_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    154586521    154586521    7    154586521    154586521    1255:indel:0    .    .    .    ID=6418538;Name=essv13030989;Alias=PHASE3_V1_SV_1000_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615615;submitter_variant_call_id=PHASE3_V1_SV_1000_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    154858219    154858219    7    154858219    154858219    1256:mobile_element_insertion:0    .    .    .    ID=6425584;Name=essv13032713;Alias=ALU_umary_ALU_6505_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615620;submitter_variant_call_id=ALU_umary_ALU_6505_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    155110581    155110581    7    155110581    155110581    1257:mobile_element_insertion:0    .    .    .    ID=6427748;Name=essv13033680;Alias=ALU_umary_ALU_6508_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615629;submitter_variant_call_id=ALU_umary_ALU_6508_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    155139369    155139369    7    155140880    155140880    1258:copy_number_loss:1511    .    .    .    ID=6429259;Name=essv13035180;Alias=UW_VH_4657_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615630;Start_range=155139227,155139370;End_range=155140881,155141083;submitter_variant_call_id=UW_VH_4657_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    155140315    155140315    7    155141439    155141439    1259:copy_number_loss:1124    .    .    .    ID=6431162;Name=essv13037134;Alias=UW_VH_9614_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615631;Start_range=155140117,155140316;End_range=155141440,155141622;submitter_variant_call_id=UW_VH_9614_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
7    156387085    156387085    7    156394311    156394311    1260:copy_number_loss:7226    .    .    .    ID=6439826;Name=essv13039613;Alias=UW_VH_2080_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615667;Start_range=156386812,156387086;End_range=156394312,156394757;submitter_variant_call_id=UW_VH_2080_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    157448786    157448786    7    157448786    157448786    1261:mobile_element_insertion:0    .    .    .    ID=6446063;Name=essv13043849;Alias=ALU_umary_ALU_6522_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3615704;submitter_variant_call_id=ALU_umary_ALU_6522_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    157718797    157718797    7    157718797    157718797    1262:indel:0    .    .    .    ID=6449967;Name=essv13045965;Alias=PHASE3_V1_SV_1008_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3615714;submitter_variant_call_id=PHASE3_V1_SV_1008_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    158029472    158029472    7    158030452    158030452    1263:copy_number_loss:980    .    .    .    ID=6459865;Name=essv13050135;Alias=BI_GS_DEL1_B1_P1397_25_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615720;Start_range=158029473,158029473;End_range=158030453,158030453;submitter_variant_call_id=BI_GS_DEL1_B1_P1397_25_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
7    158046567    158046567    7    158047316    158047316    1264:copy_number_loss:749    .    .    .    ID=6461814;Name=essv13052376;Alias=SI_BD_8455_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615722;Start_range=158046374,158046625;End_range=158047267,158047511;submitter_variant_call_id=SI_BD_8455_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    594394    594394    8    599416    599416    1265:copy_number_loss:5022    .    .    .    ID=6470276;Name=essv13055731;Alias=UW_VH_25421_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615793;Start_range=594049,594395;End_range=599417,599790;submitter_variant_call_id=UW_VH_25421_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    597103    597103    8    598343    598343    1266:copy_number_loss:1240    .    .    .    ID=6473238;Name=essv13057877;Alias=BI_GS_DEL1_B2_P1399_303_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615794;Start_range=597103,597105;End_range=598343,598345;submitter_variant_call_id=BI_GS_DEL1_B2_P1399_303_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    2122087    2122087    8    2122353    2122353    1267:copy_number_loss:266    .    .    .    ID=6489915;Name=essv13065093;Alias=BI_GS_DEL1_B5_P1401_148_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615860;Start_range=2122088,2122088;End_range=2122354,2122354;submitter_variant_call_id=BI_GS_DEL1_B5_P1401_148_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    2132772    2132772    8    2270818    2270818    1268:copy_number_gain:138046    .    .    .    ID=6491573;Name=essv13067679;Alias=DUP_uwash_chr8_2132773_2270819_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3615862;submitter_variant_call_id=DUP_uwash_chr8_2132773_2270819_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    4122886    4122886    8    4124964    4124964    1269:copy_number_loss:2078    .    .    .    ID=6502054;Name=essv13074246;Alias=UW_VH_14451_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3615965;Start_range=4122468,4122887;End_range=4124965,4125369;submitter_variant_call_id=UW_VH_14451_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    5829281    5829281    8    5829281    5829281    1270:mobile_element_insertion:0    .    .    .    ID=6509041;Name=essv13077915;Alias=L1_umary_LINE1_1626_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616063;submitter_variant_call_id=L1_umary_LINE1_1626_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    6991758    6991758    8    6995385    6995385    1271:copy_number_loss:3627    .    .    .    ID=6517800;Name=essv13081260;Alias=DUP_gs_CNV_8_6991759_6995386_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616110;submitter_variant_call_id=DUP_gs_CNV_8_6991759_6995386_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    7212581    7212581    8    7227420    7227420    1272:copy_number_gain:14839    .    .    .    ID=6520898;Name=essv13083171;Alias=DUP_gs_CNV_8_7212582_7227421_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3616117;submitter_variant_call_id=DUP_gs_CNV_8_7212582_7227421_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    7355292    7355292    8    7364761    7364761    1273:copy_number_loss:9469    .    .    .    ID=6525043;Name=essv13085290;Alias=BI_GS_DEL1_B1_P1406_29_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616120;Start_range=7355293,7355293;End_range=7364762,7364762;submitter_variant_call_id=BI_GS_DEL1_B1_P1406_29_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    7774145    7774145    8    7782326    7782326    1274:copy_number_loss:8181    .    .    .    ID=6529286;Name=essv13087058;Alias=DUP_gs_CNV_8_7774146_7782327_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616121;submitter_variant_call_id=DUP_gs_CNV_8_7774146_7782327_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    8385997    8385997    8    8386924    8386924    1275:copy_number_loss:927    .    .    .    ID=6540227;Name=essv13093324;Alias=BI_GS_DEL1_B4_P1407_56_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616140;Start_range=8385995,8386001;End_range=8386922,8386928;submitter_variant_call_id=BI_GS_DEL1_B4_P1407_56_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    9012965    9012965    8    9012965    9012965    1276:mobile_element_insertion:0    .    .    .    ID=6545421;Name=essv13095410;Alias=ALU_umary_ALU_6561_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616168;submitter_variant_call_id=ALU_umary_ALU_6561_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    9665672    9665672    8    9665672    9665672    1277:mobile_element_insertion:0    .    .    .    ID=6552701;Name=essv13098745;Alias=ALU_umary_ALU_6564_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616200;submitter_variant_call_id=ALU_umary_ALU_6564_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    9807900    9807900    8    9807900    9807900    1278:mobile_element_insertion:0    .    .    .    ID=6554768;Name=essv13100876;Alias=ALU_umary_ALU_6565_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616208;submitter_variant_call_id=ALU_umary_ALU_6565_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    11245529    11245529    8    11247216    11247216    1279:copy_number_loss:1687    .    .    .    ID=6562110;Name=essv13103537;Alias=UW_VH_15223_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616249;Start_range=11245082,11245530;End_range=11247217,11247761;submitter_variant_call_id=UW_VH_15223_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    11996080    11996080    8    12012944    12012944    1280:copy_number_gain:16864    .    .    .    ID=6566730;Name=essv13106072;Alias=DUP_gs_CNV_8_11996081_12012945_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3616268;submitter_variant_call_id=DUP_gs_CNV_8_11996081_12012945_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    12233574    12233574    8    12236243    12236243    1281:copy_number_loss:2669    .    .    .    ID=6570137;Name=essv13107555;Alias=SI_BD_8670_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616273;Start_range=12233357,12233625;End_range=12236098,12236462;submitter_variant_call_id=SI_BD_8670_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    12237310    12237310    8    12251514    12251514    1282:copy_number_loss:14204    .    .    .    ID=6571650;Name=essv13108466;Alias=DUP_gs_CNV_8_12237311_12251515_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616274;submitter_variant_call_id=DUP_gs_CNV_8_12237311_12251515_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    12389849    12389849    8    12428477    12428477    1283:copy_number_gain:38628    .    .    .    ID=6576391;Name=essv13111229;Alias=DUP_gs_CNV_8_12389850_12428478_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3616278;submitter_variant_call_id=DUP_gs_CNV_8_12389850_12428478_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    13650896    13650896    8    13650896    13650896    1284:mobile_element_insertion:0    .    .    .    ID=6586026;Name=essv13115453;Alias=ALU_umary_ALU_6583_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616341;submitter_variant_call_id=ALU_umary_ALU_6583_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    15399347    15399347    8    15399347    15399347    1285:mobile_element_insertion:0    .    .    .    ID=6592026;Name=essv13117821;Alias=ALU_umary_ALU_6594_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616405;submitter_variant_call_id=ALU_umary_ALU_6594_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    16102821    16102821    8    16102821    16102821    1286:mobile_element_insertion:0    .    .    .    ID=6596029;Name=essv13120497;Alias=ALU_umary_ALU_6598_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616440;submitter_variant_call_id=ALU_umary_ALU_6598_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    17336020    17336020    8    17336020    17336020    1287:mobile_element_insertion:0    .    .    .    ID=6613735;Name=essv13128640;Alias=ALU_umary_ALU_6603_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616487;submitter_variant_call_id=ALU_umary_ALU_6603_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    19658937    19658937    8    19658937    19658937    1288:mobile_element_insertion:0    .    .    .    ID=6619635;Name=essv13131993;Alias=ALU_umary_ALU_6611_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616552;submitter_variant_call_id=ALU_umary_ALU_6611_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    24779113    24779113    8    24779113    24779113    1289:mobile_element_insertion:0    .    .    .    ID=6632454;Name=essv13138156;Alias=ALU_umary_ALU_6637_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616667;submitter_variant_call_id=ALU_umary_ALU_6637_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    24972436    24972436    8    24990949    24990949    1290:copy_number_loss:18513    .    .    .    ID=6635807;Name=essv13140341;Alias=UW_VH_2559_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616671;Start_range=24971972,24972437;End_range=24990950,24991453;submitter_variant_call_id=UW_VH_2559_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    25066681    25066681    8    25070658    25070658    1291:copy_number_loss:3977    .    .    .    ID=6637014;Name=essv13142088;Alias=BI_GS_DEL1_B1_P1424_53_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616676;Start_range=25066682,25066682;End_range=25070659,25070659;submitter_variant_call_id=BI_GS_DEL1_B1_P1424_53_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    25172659    25172659    8    25172659    25172659    1292:mobile_element_insertion:0    .    .    .    ID=6641176;Name=essv13144181;Alias=ALU_umary_ALU_6639_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616679;submitter_variant_call_id=ALU_umary_ALU_6639_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    25327221    25327221    8    25327221    25327221    1293:indel:0    .    .    .    ID=6648750;Name=essv13146618;Alias=PHASE3_V1_SV_1032_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3616681;submitter_variant_call_id=PHASE3_V1_SV_1032_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    26215664    26215664    8    26215664    26215664    1294:mobile_element_insertion:0    .    .    .    ID=6654805;Name=essv13149628;Alias=ALU_umary_ALU_6643_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616700;submitter_variant_call_id=ALU_umary_ALU_6643_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    26742570    26742570    8    26742570    26742570    1295:mobile_element_insertion:0    .    .    .    ID=6657233;Name=essv13150121;Alias=ALU_umary_ALU_6645_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616706;submitter_variant_call_id=ALU_umary_ALU_6645_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    26879421    26879421    8    26880952    26880952    1296:copy_number_loss:1531    .    .    .    ID=6657425;Name=essv13150419;Alias=UW_VH_2468_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616709;Start_range=26879045,26879422;End_range=26880953,26881285;submitter_variant_call_id=UW_VH_2468_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    27776160    27776160    8    27776160    27776160    1297:indel:0    .    .    .    ID=6660381;Name=essv13152355;Alias=PHASE3_V1_SV_1033_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3616728;submitter_variant_call_id=PHASE3_V1_SV_1033_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    30603902    30603902    8    30605522    30605522    1298:copy_number_loss:1620    .    .    .    ID=6668047;Name=essv13155959;Alias=BI_GS_DEL1_B1_P1429_507_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616794;Start_range=30603868,30603938;End_range=30605488,30605558;submitter_variant_call_id=BI_GS_DEL1_B1_P1429_507_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    32359985    32359985    8    32359985    32359985    1299:mobile_element_insertion:0    .    .    .    ID=6671164;Name=essv13157761;Alias=ALU_umary_ALU_6662_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616811;submitter_variant_call_id=ALU_umary_ALU_6662_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    32679959    32679959    8    32691258    32691258    1300:copy_number_loss:11299    .    .    .    ID=6674714;Name=essv13159970;Alias=SI_BD_8809_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616814;Start_range=32679638,32680055;End_range=32691209,32691581;submitter_variant_call_id=SI_BD_8809_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    34469658    34469658    8    34469658    34469658    1301:mobile_element_insertion:0    .    .    .    ID=6684968;Name=essv13164412;Alias=ALU_umary_ALU_6674_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616859;submitter_variant_call_id=ALU_umary_ALU_6674_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    34923041    34923041    8    34923041    34923041    1302:mobile_element_insertion:0    .    .    .    ID=6689374;Name=essv13165868;Alias=ALU_umary_ALU_6676_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616874;submitter_variant_call_id=ALU_umary_ALU_6676_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    35069036    35069036    8    35069036    35069036    1303:mobile_element_insertion:0    .    .    .    ID=6689987;Name=essv13167124;Alias=ALU_umary_ALU_6680_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616880;submitter_variant_call_id=ALU_umary_ALU_6680_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    38864076    38864076    8    38864076    38864076    1304:mobile_element_insertion:0    .    .    .    ID=6697178;Name=essv13170290;Alias=ALU_umary_ALU_6685_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616938;submitter_variant_call_id=ALU_umary_ALU_6685_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39195824    39195824    8    39389229    39389229    1305:copy_number_loss:193405    .    .    .    ID=6699600;Name=essv13171565;Alias=DUP_uwash_chr8_39195825_39389230_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616947;submitter_variant_call_id=DUP_uwash_chr8_39195825_39389230_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39232004    39232004    8    39287822    39287822    1306:copy_number_loss:55818    .    .    .    ID=6700694;Name=essv13172660;Alias=BI_GS_CNV_8_39232005_39287823_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616948;Start_range=39231505,39232005;End_range=39287823,39288323;submitter_variant_call_id=BI_GS_CNV_8_39232005_39287823_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39303972    39303972    8    39308305    39308305    1307:copy_number_loss:4333    .    .    .    ID=6702388;Name=essv13173756;Alias=BI_GS_DEL1_B5_P1438_306_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616949;Start_range=39303964,39303983;End_range=39308297,39308316;submitter_variant_call_id=BI_GS_DEL1_B5_P1438_306_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39306886    39306886    8    39312030    39312030    1308:copy_number_loss:5144    .    .    .    ID=6703348;Name=essv13174854;Alias=BI_GS_DEL1_B2_P1438_218_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616950;Start_range=39306871,39306903;End_range=39312015,39312047;submitter_variant_call_id=BI_GS_DEL1_B2_P1438_218_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39311275    39311275    8    39321580    39321580    1309:copy_number_loss:10305    .    .    .    ID=6703905;Name=essv13175949;Alias=YL_CN_LWK_1922_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616951;Start_range=39310276,39311776;End_range=39321081,39322581;submitter_variant_call_id=YL_CN_LWK_1922_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39700474    39700474    8    39700474    39700474    1310:mobile_element_insertion:0    .    .    .    ID=6711206;Name=essv13176936;Alias=ALU_umary_ALU_6690_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616961;submitter_variant_call_id=ALU_umary_ALU_6690_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    39885684    39885684    8    39890840    39890840    1311:copy_number_loss:5156    .    .    .    ID=6712119;Name=essv13177142;Alias=EM_DL_DEL95775_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616966;Start_range=39885535,39885835;End_range=39890691,39890991;submitter_variant_call_id=EM_DL_DEL95775_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    40469705    40469705    8    40470385    40470385    1312:copy_number_loss:680    .    .    .    ID=6712857;Name=essv13177937;Alias=BI_GS_DEL1_B5_P1439_593_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616975;Start_range=40469705,40469708;End_range=40470385,40470388;submitter_variant_call_id=BI_GS_DEL1_B5_P1439_593_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    40774596    40774596    8    40779781    40779781    1313:copy_number_loss:5185    .    .    .    ID=6715252;Name=essv13179361;Alias=SI_BD_8864_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3616978;Start_range=40774331,40774684;End_range=40779732,40780048;submitter_variant_call_id=SI_BD_8864_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    41270467    41270467    8    41270467    41270467    1314:mobile_element_insertion:0    .    .    .    ID=6720158;Name=essv13181656;Alias=ALU_umary_ALU_6696_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3616989;submitter_variant_call_id=ALU_umary_ALU_6696_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    42039905    42039905    8    42039905    42039905    1315:mobile_element_insertion:0    .    .    .    ID=6722944;Name=essv13183357;Alias=ALU_umary_ALU_6700_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617004;submitter_variant_call_id=ALU_umary_ALU_6700_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    42190386    42190386    8    42194351    42194351    1316:copy_number_loss:3965    .    .    .    ID=6726838;Name=essv13185213;Alias=EM_DL_DEL95835_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617008;Start_range=42190237,42190537;End_range=42194202,42194502;submitter_variant_call_id=EM_DL_DEL95835_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    46991404    46991404    8    46992653    46992653    1317:copy_number_loss:1249    .    .    .    ID=6738562;Name=essv13188320;Alias=YL_CN_CLM_1731_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617062;Start_range=46990405,46991905;End_range=46992154,46993654;submitter_variant_call_id=YL_CN_CLM_1731_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    46991585    46991585    8    46992439    46992439    1318:copy_number_loss:854    .    .    .    ID=6740059;Name=essv13189875;Alias=BI_GS_DEL1_B4_P1445_36_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617063;Start_range=46991586,46991586;End_range=46992440,46992440;submitter_variant_call_id=BI_GS_DEL1_B4_P1445_36_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    47405848    47405848    8    47407907    47407907    1319:copy_number_loss:2059    .    .    .    ID=6741925;Name=essv13191621;Alias=BI_GS_DEL1_B4_P1446_76_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617077;Start_range=47405845,47405853;End_range=47407904,47407912;submitter_variant_call_id=BI_GS_DEL1_B4_P1446_76_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    49093380    49093380    8    49093978    49093978    1320:copy_number_loss:598    .    .    .    ID=6747638;Name=essv13194569;Alias=BI_GS_DEL1_B4_P1448_23_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617116;Start_range=49093381,49093382;End_range=49093979,49093980;submitter_variant_call_id=BI_GS_DEL1_B4_P1448_23_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    52023760    52023760    8    52024036    52024036    1321:copy_number_loss:276    .    .    .    ID=6758132;Name=essv13199663;Alias=BI_GS_DEL1_B5_P1451_29_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617192;Start_range=52023761,52023761;End_range=52024037,52024037;submitter_variant_call_id=BI_GS_DEL1_B5_P1451_29_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    53791059    53791059    8    53791059    53791059    1322:mobile_element_insertion:0    .    .    .    ID=6762713;Name=essv13201471;Alias=ALU_umary_ALU_6732_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617222;submitter_variant_call_id=ALU_umary_ALU_6732_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    59615989    59615989    8    59615989    59615989    1323:mobile_element_insertion:0    .    .    .    ID=6774773;Name=essv13207325;Alias=ALU_umary_ALU_6760_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617344;submitter_variant_call_id=ALU_umary_ALU_6760_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    60797920    60797920    8    60797920    60797920    1324:mobile_element_insertion:0    .    .    .    ID=6778958;Name=essv13209487;Alias=ALU_umary_ALU_6766_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617364;submitter_variant_call_id=ALU_umary_ALU_6766_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    61526796    61526796    8    61526796    61526796    1325:mobile_element_insertion:0    .    .    .    ID=6780880;Name=essv13210825;Alias=ALU_umary_ALU_6769_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617377;submitter_variant_call_id=ALU_umary_ALU_6769_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    62115159    62115159    8    62115159    62115159    1326:mobile_element_insertion:0    .    .    .    ID=6782016;Name=essv13211198;Alias=L1_umary_LINE1_1669_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617381;submitter_variant_call_id=L1_umary_LINE1_1669_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    68981807    68981807    8    68981807    68981807    1327:mobile_element_insertion:0    .    .    .    ID=6795297;Name=essv13217684;Alias=ALU_umary_ALU_6795_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617518;submitter_variant_call_id=ALU_umary_ALU_6795_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    71914590    71914590    8    71914590    71914590    1328:mobile_element_insertion:0    .    .    .    ID=6803072;Name=essv13220498;Alias=ALU_umary_ALU_6806_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617579;submitter_variant_call_id=ALU_umary_ALU_6806_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    75362834    75362834    8    75366958    75366958    1329:copy_number_loss:4124    .    .    .    ID=6822223;Name=essv13228279;Alias=SI_BD_9058_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3617660;Start_range=75362571,75362885;End_range=75366909,75367223;submitter_variant_call_id=SI_BD_9058_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    75375345    75375345    8    75375345    75375345    1330:mobile_element_insertion:0    .    .    .    ID=6823569;Name=essv13230622;Alias=ALU_umary_ALU_6839_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617661;submitter_variant_call_id=ALU_umary_ALU_6839_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    75448822    75448822    8    75448822    75448822    1331:mobile_element_insertion:0    .    .    .    ID=6825558;Name=essv13231578;Alias=ALU_umary_ALU_6841_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617666;submitter_variant_call_id=ALU_umary_ALU_6841_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    80208267    80208267    8    80208267    80208267    1332:mobile_element_insertion:0    .    .    .    ID=6836231;Name=essv13237866;Alias=ALU_umary_ALU_6865_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617754;submitter_variant_call_id=ALU_umary_ALU_6865_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    83740692    83740692    8    83740692    83740692    1333:mobile_element_insertion:0    .    .    .    ID=6845202;Name=essv13241977;Alias=L1_umary_LINE1_1698_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617822;submitter_variant_call_id=L1_umary_LINE1_1698_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    85437273    85437273    8    85437273    85437273    1334:mobile_element_insertion:0    .    .    .    ID=6850820;Name=essv13245156;Alias=ALU_umary_ALU_6900_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617861;submitter_variant_call_id=ALU_umary_ALU_6900_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    87079636    87079636    8    87079636    87079636    1335:mobile_element_insertion:0    .    .    .    ID=6856276;Name=essv13246916;Alias=ALU_umary_ALU_6907_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617901;submitter_variant_call_id=ALU_umary_ALU_6907_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    87315039    87315039    8    87315039    87315039    1336:mobile_element_insertion:0    .    .    .    ID=6859006;Name=essv13249119;Alias=L1_umary_LINE1_1704_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617908;submitter_variant_call_id=L1_umary_LINE1_1704_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    87770102    87770102    8    87770102    87770102    1337:mobile_element_insertion:0    .    .    .    ID=6861156;Name=essv13249905;Alias=ALU_umary_ALU_6912_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617915;submitter_variant_call_id=ALU_umary_ALU_6912_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    90669904    90669904    8    90669904    90669904    1338:mobile_element_insertion:0    .    .    .    ID=6867082;Name=essv13253189;Alias=ALU_umary_ALU_6932_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3617985;submitter_variant_call_id=ALU_umary_ALU_6932_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    94072345    94072345    8    94077191    94077191    1339:copy_number_loss:4846    .    .    .    ID=6878567;Name=essv13258739;Alias=BI_GS_DEL1_B2_P1493_53_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618047;Start_range=94072346,94072346;End_range=94077192,94077192;submitter_variant_call_id=BI_GS_DEL1_B2_P1493_53_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    94162487    94162487    8    94162487    94162487    1340:mobile_element_insertion:0    .    .    .    ID=6879918;Name=essv13259757;Alias=ALU_umary_ALU_6951_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618049;submitter_variant_call_id=ALU_umary_ALU_6951_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    96467793    96467793    8    96467793    96467793    1341:mobile_element_insertion:0    .    .    .    ID=6887913;Name=essv13262105;Alias=ALU_umary_ALU_6960_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618100;submitter_variant_call_id=ALU_umary_ALU_6960_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    96783547    96783547    8    96783547    96783547    1342:mobile_element_insertion:0    .    .    .    ID=6891361;Name=essv13264749;Alias=ALU_umary_ALU_6967_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618111;submitter_variant_call_id=ALU_umary_ALU_6967_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    96875230    96875230    8    96879581    96879581    1343:copy_number_loss:4351    .    .    .    ID=6892570;Name=essv13265663;Alias=UW_VH_10394_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618113;Start_range=96874671,96875231;End_range=96879582,96880030;submitter_variant_call_id=UW_VH_10394_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    101890451    101890451    8    101890451    101890451    1344:indel:0    .    .    .    ID=6899143;Name=essv13268858;Alias=PHASE3_V1_SV_1079_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3618197;submitter_variant_call_id=PHASE3_V1_SV_1079_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    103554129    103554129    8    103554129    103554129    1345:mobile_element_insertion:0    .    .    .    ID=6902365;Name=essv13270531;Alias=ALU_umary_ALU_6990_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618225;submitter_variant_call_id=ALU_umary_ALU_6990_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    103994622    103994622    8    103996787    103996787    1346:copy_number_loss:2165    .    .    .    ID=6903644;Name=essv13271284;Alias=YL_CN_CEU_2599_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618242;Start_range=103993623,103995123;End_range=103996288,103997788;submitter_variant_call_id=YL_CN_CEU_2599_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    104990588    104990588    8    104990588    104990588    1347:indel:0    .    .    .    ID=6904893;Name=essv13271952;Alias=PHASE3_V1_SV_1082_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3618267;submitter_variant_call_id=PHASE3_V1_SV_1082_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    106664521    106664521    8    106664521    106664521    1348:mobile_element_insertion:0    .    .    .    ID=6912478;Name=essv13273772;Alias=ALU_umary_ALU_7006_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618289;submitter_variant_call_id=ALU_umary_ALU_7006_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    107207887    107207887    8    107207887    107207887    1349:mobile_element_insertion:0    .    .    .    ID=6915202;Name=essv13276337;Alias=ALU_umary_ALU_7009_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618301;submitter_variant_call_id=ALU_umary_ALU_7009_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    107532424    107532424    8    107532424    107532424    1350:indel:0    .    .    .    ID=6917919;Name=essv13278327;Alias=PHASE3_V1_SV_1083_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3618311;submitter_variant_call_id=PHASE3_V1_SV_1083_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    109135935    109135935    8    109135935    109135935    1351:mobile_element_insertion:0    .    .    .    ID=6923684;Name=essv13280584;Alias=SVA_umary_SVA_389_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618344;submitter_variant_call_id=SVA_umary_SVA_389_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    110101604    110101604    8    110101604    110101604    1352:mobile_element_insertion:0    .    .    .    ID=6929064;Name=essv13282646;Alias=ALU_umary_ALU_7037_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618367;submitter_variant_call_id=ALU_umary_ALU_7037_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    110234721    110234721    8    110235044    110235044    1353:copy_number_loss:323    .    .    .    ID=6930455;Name=essv13284109;Alias=BI_GS_DEL1_B3_P1509_10_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618370;Start_range=110234722,110234722;End_range=110235045,110235045;submitter_variant_call_id=BI_GS_DEL1_B3_P1509_10_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    110349309    110349309    8    110349309    110349309    1354:mobile_element_insertion:0    .    .    .    ID=6931117;Name=essv13284907;Alias=ALU_umary_ALU_7039_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618373;submitter_variant_call_id=ALU_umary_ALU_7039_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    110370885    110370885    8    110370885    110370885    1355:mobile_element_insertion:0    .    .    .    ID=6931788;Name=essv13285450;Alias=ALU_umary_ALU_7040_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618375;submitter_variant_call_id=ALU_umary_ALU_7040_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    112294056    112294056    8    112297141    112297141    1356:copy_number_loss:3085    .    .    .    ID=6936019;Name=essv13287462;Alias=UW_VH_3651_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618427;Start_range=112293625,112294057;End_range=112297142,112297668;submitter_variant_call_id=UW_VH_3651_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    114792928    114792928    8    114792928    114792928    1357:mobile_element_insertion:0    .    .    .    ID=6947627;Name=essv13290701;Alias=ALU_umary_ALU_7067_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618477;submitter_variant_call_id=ALU_umary_ALU_7067_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    114934390    114934390    8    114934682    114934682    1358:copy_number_loss:292    .    .    .    ID=6950579;Name=essv13292830;Alias=BI_GS_DEL1_B5_P1513_958_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618481;Start_range=114934391,114934391;End_range=114934683,114934683;submitter_variant_call_id=BI_GS_DEL1_B5_P1513_958_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    115079315    115079315    8    115080674    115080674    1359:copy_number_loss:1359    .    .    .    ID=6953050;Name=essv13293846;Alias=BI_GS_DEL1_B4_P1514_24_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618485;Start_range=115079316,115079316;End_range=115080675,115080675;submitter_variant_call_id=BI_GS_DEL1_B4_P1514_24_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    115997800    115997800    8    115998359    115998359    1360:copy_number_loss:559    .    .    .    ID=6957110;Name=essv13297802;Alias=BI_GS_DEL1_B2_P1514_605_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618513;Start_range=115997801,115997801;End_range=115998360,115998360;submitter_variant_call_id=BI_GS_DEL1_B2_P1514_605_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    117047018    117047018    8    117047018    117047018    1361:mobile_element_insertion:0    .    .    .    ID=6960556;Name=essv13299771;Alias=ALU_umary_ALU_7081_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618526;submitter_variant_call_id=ALU_umary_ALU_7081_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    118873793    118873793    8    118875588    118875588    1362:copy_number_loss:1795    .    .    .    ID=6964411;Name=essv13301296;Alias=UW_VH_2088_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618562;Start_range=118873455,118873794;End_range=118875589,118875873;submitter_variant_call_id=UW_VH_2088_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    120154533    120154533    8    120161209    120161209    1363:copy_number_loss:6676    .    .    .    ID=6969398;Name=essv13303482;Alias=BI_GS_DEL1_B2_P1519_123_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618592;Start_range=120154534,120154534;End_range=120161210,120161210;submitter_variant_call_id=BI_GS_DEL1_B2_P1519_123_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    122155286    122155286    8    122155286    122155286    1364:mobile_element_insertion:0    .    .    .    ID=6975734;Name=essv13305928;Alias=ALU_umary_ALU_7101_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618617;submitter_variant_call_id=ALU_umary_ALU_7101_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    122280603    122280603    8    122280603    122280603    1365:mobile_element_insertion:0    .    .    .    ID=6976344;Name=essv13306322;Alias=ALU_umary_ALU_7102_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618621;submitter_variant_call_id=ALU_umary_ALU_7102_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    125889969    125889969    8    125889969    125889969    1366:mobile_element_insertion:0    .    .    .    ID=6991550;Name=essv13313972;Alias=ALU_umary_ALU_7124_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618707;submitter_variant_call_id=ALU_umary_ALU_7124_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    126024118    126024118    8    126024118    126024118    1367:mobile_element_insertion:0    .    .    .    ID=6993024;Name=essv13315435;Alias=ALU_umary_ALU_7125_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618708;submitter_variant_call_id=ALU_umary_ALU_7125_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    127192195    127192195    8    127194568    127194568    1368:copy_number_loss:2373    .    .    .    ID=7000050;Name=essv13317391;Alias=UW_VH_14572_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618738;Start_range=127191748,127192196;End_range=127194569,127195108;submitter_variant_call_id=UW_VH_14572_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    127865478    127865478    8    127865478    127865478    1369:mobile_element_insertion:0    .    .    .    ID=7003053;Name=essv13319353;Alias=ALU_umary_ALU_7137_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618759;submitter_variant_call_id=ALU_umary_ALU_7137_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    128356666    128356666    8    128356666    128356666    1370:mobile_element_insertion:0    .    .    .    ID=7007057;Name=essv13321924;Alias=ALU_umary_ALU_7143_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618773;submitter_variant_call_id=ALU_umary_ALU_7143_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    131041234    131041234    8    131041234    131041234    1371:mobile_element_insertion:0    .    .    .    ID=7021077;Name=essv13328865;Alias=L1_umary_LINE1_1761_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618823;submitter_variant_call_id=L1_umary_LINE1_1761_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    131850719    131850719    8    131852722    131852722    1372:copy_number_loss:2003    .    .    .    ID=7026318;Name=essv13330414;Alias=BI_GS_DEL1_B2_P1530_662_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618837;Start_range=131850718,131850722;End_range=131852721,131852725;submitter_variant_call_id=BI_GS_DEL1_B2_P1530_662_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    132277656    132277656    8    132280534    132280534    1373:copy_number_loss:2878    .    .    .    ID=7028425;Name=essv13332833;Alias=UW_VH_4096_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618850;Start_range=132277225,132277657;End_range=132280535,132281139;submitter_variant_call_id=UW_VH_4096_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    132377887    132377887    8    132377887    132377887    1374:mobile_element_insertion:0    .    .    .    ID=7030311;Name=essv13333602;Alias=ALU_umary_ALU_7160_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618852;submitter_variant_call_id=ALU_umary_ALU_7160_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    133758624    133758624    8    133758624    133758624    1375:indel:0    .    .    .    ID=7036190;Name=essv13337307;Alias=PHASE3_V1_SV_1103_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3618881;submitter_variant_call_id=PHASE3_V1_SV_1103_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    137160270    137160270    8    137163813    137163813    1376:copy_number_loss:3543    .    .    .    ID=7044478;Name=essv13340747;Alias=DUP_gs_CNV_8_137160271_137163814_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618933;submitter_variant_call_id=DUP_gs_CNV_8_137160271_137163814_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    138295182    138295182    8    138295182    138295182    1377:mobile_element_insertion:0    .    .    .    ID=7054120;Name=essv13343116;Alias=ALU_umary_ALU_7184_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618955;submitter_variant_call_id=ALU_umary_ALU_7184_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    138742942    138742942    8    138743863    138743863    1378:copy_number_loss:921    .    .    .    ID=7058119;Name=essv13345175;Alias=UW_VH_752_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618963;Start_range=138742441,138742943;End_range=138743864,138744354;submitter_variant_call_id=UW_VH_752_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    138743346    138743346    8    138743802    138743802    1379:copy_number_loss:456    .    .    .    ID=7059296;Name=essv13347266;Alias=BI_GS_DEL1_B5_P1537_850_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3618964;Start_range=138743300,138743395;End_range=138743756,138743851;submitter_variant_call_id=BI_GS_DEL1_B5_P1537_850_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    139325978    139325978    8    139325978    139325978    1380:mobile_element_insertion:0    .    .    .    ID=7062629;Name=essv13350523;Alias=ALU_umary_ALU_7191_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3618983;submitter_variant_call_id=ALU_umary_ALU_7191_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    141209604    141209604    8    141209604    141209604    1381:indel:0    .    .    .    ID=7076859;Name=essv13356451;Alias=PHASE3_V1_SV_1108_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3619027;submitter_variant_call_id=PHASE3_V1_SV_1108_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    142940054    142940054    8    142940054    142940054    1382:mobile_element_insertion:0    .    .    .    ID=7085142;Name=essv13358951;Alias=ALU_umary_ALU_7202_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619071;submitter_variant_call_id=ALU_umary_ALU_7202_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    142953015    142953015    8    142953015    142953015    1383:indel:0    .    .    .    ID=7087516;Name=essv13360878;Alias=PHASE3_V1_SV_1109_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3619072;submitter_variant_call_id=PHASE3_V1_SV_1109_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    143494783    143494783    8    143495713    143495713    1384:copy_number_loss:930    .    .    .    ID=7090656;Name=essv13363692;Alias=SI_BD_9453_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619089;Start_range=143494514,143494834;End_range=143495664,143495984;submitter_variant_call_id=SI_BD_9453_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    144700480    144700480    8    144714695    144714695    1385:copy_number_loss:14215    .    .    .    ID=7097530;Name=essv13366237;Alias=BI_GS_DEL1_B1_P1543_443_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619113;Start_range=144700481,144700481;End_range=144714696,144714696;submitter_variant_call_id=BI_GS_DEL1_B1_P1543_443_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    144709681    144709681    8    144710110    144710110    1386:copy_number_loss:429    .    .    .    ID=7098929;Name=essv13367388;Alias=BI_GS_DEL1_B3_P1543_33_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619114;Start_range=144709645,144709719;End_range=144710074,144710148;submitter_variant_call_id=BI_GS_DEL1_B3_P1543_33_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
8    146057036    146057036    8    146057832    146057832    1387:copy_number_loss:796    .    .    .    ID=7105945;Name=essv13370407;Alias=UW_VH_754_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619142;Start_range=146056516,146057037;End_range=146057833,146058343;submitter_variant_call_id=UW_VH_754_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
8    146192868    146192868    8    146193179    146193179    1388:copy_number_loss:311    .    .    .    ID=7107798;Name=essv13372243;Alias=BI_GS_DEL1_B3_P1545_13_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619145;Start_range=146192869,146192869;End_range=146193180,146193180;submitter_variant_call_id=BI_GS_DEL1_B3_P1545_13_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    4376385    4376385    9    4377624    4377624    1389:copy_number_loss:1239    .    .    .    ID=7127881;Name=essv13382766;Alias=BI_GS_DEL1_B2_P1550_292_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619337;Start_range=4376384,4376389;End_range=4377623,4377628;submitter_variant_call_id=BI_GS_DEL1_B2_P1550_292_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    4814221    4814221    9    4814221    4814221    1390:mobile_element_insertion:0    .    .    .    ID=7129594;Name=essv13383766;Alias=ALU_umary_ALU_7241_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619359;submitter_variant_call_id=ALU_umary_ALU_7241_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    5641636    5641636    9    5642807    5642807    1391:copy_number_loss:1171    .    .    .    ID=7133198;Name=essv13385454;Alias=BI_GS_DEL1_B4_P1551_150_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619384;Start_range=5641637,5641637;End_range=5642808,5642808;submitter_variant_call_id=BI_GS_DEL1_B4_P1551_150_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    6290493    6290493    9    6290493    6290493    1392:mobile_element_insertion:0    .    .    .    ID=7134844;Name=essv13387320;Alias=L1_umary_LINE1_1783_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619397;submitter_variant_call_id=L1_umary_LINE1_1783_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    6729098    6729098    9    6730087    6730087    1393:copy_number_loss:989    .    .    .    ID=7141444;Name=essv13389926;Alias=BI_GS_DEL1_B2_P1552_450_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619435;Start_range=6729099,6729099;End_range=6730088,6730088;submitter_variant_call_id=BI_GS_DEL1_B2_P1552_450_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    6780328    6780328    9    6780328    6780328    1394:mobile_element_insertion:0    .    .    .    ID=7144302;Name=essv13390906;Alias=ALU_umary_ALU_7256_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619448;submitter_variant_call_id=ALU_umary_ALU_7256_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    7852537    7852537    9    7852537    7852537    1395:mobile_element_insertion:0    .    .    .    ID=7150116;Name=essv13393602;Alias=ALU_umary_ALU_7261_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619472;submitter_variant_call_id=ALU_umary_ALU_7261_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    8640831    8640831    9    8641675    8641675    1396:copy_number_loss:844    .    .    .    ID=7152485;Name=essv13394708;Alias=BI_GS_DEL1_B4_P1554_163_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619489;Start_range=8640823,8640841;End_range=8641667,8641685;submitter_variant_call_id=BI_GS_DEL1_B4_P1554_163_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    10404414    10404414    9    10405175    10405175    1397:copy_number_loss:761    .    .    .    ID=7159836;Name=essv13398534;Alias=EM_DL_DEL101111593_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619547;Start_range=10404265,10404565;End_range=10405026,10405326;submitter_variant_call_id=EM_DL_DEL101111593_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    10404561    10404561    9    10405090    10405090    1398:copy_number_loss:529    .    .    .    ID=7164794;Name=essv13400886;Alias=BI_GS_DEL1_B2_P1556_238_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619548;Start_range=10404562,10404562;End_range=10405091,10405091;submitter_variant_call_id=BI_GS_DEL1_B2_P1556_238_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    15815276    15815276    9    15821946    15821946    1399:copy_number_loss:6670    .    .    .    ID=7182326;Name=essv13409223;Alias=UW_VH_25180_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619796;Start_range=15814951,15815277;End_range=15821947,15822215;submitter_variant_call_id=UW_VH_25180_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    16682312    16682312    9    16682312    16682312    1400:mobile_element_insertion:0    .    .    .    ID=7184346;Name=essv13411091;Alias=ALU_umary_ALU_7311_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619819;submitter_variant_call_id=ALU_umary_ALU_7311_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    17909346    17909346    9    17912847    17912847    1401:copy_number_loss:3501    .    .    .    ID=7192981;Name=essv13414446;Alias=YL_CN_GWD_2944_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619859;Start_range=17908347,17909847;End_range=17912348,17913848;submitter_variant_call_id=YL_CN_GWD_2944_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    21038452    21038452    9    21038452    21038452    1402:mobile_element_insertion:0    .    .    .    ID=7197035;Name=essv13417364;Alias=ALU_umary_ALU_7331_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619946;submitter_variant_call_id=ALU_umary_ALU_7331_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    21261948    21261948    9    21261948    21261948    1403:mobile_element_insertion:0    .    .    .    ID=7202538;Name=essv13419585;Alias=ALU_umary_ALU_7336_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619960;submitter_variant_call_id=ALU_umary_ALU_7336_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    21738907    21738907    9    21738907    21738907    1404:indel:0    .    .    .    ID=7203680;Name=essv13420426;Alias=PHASE3_V1_SV_1123_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3619968;submitter_variant_call_id=PHASE3_V1_SV_1123_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    22288723    22288723    9    22288723    22288723    1405:mobile_element_insertion:0    .    .    .    ID=7206140;Name=essv13422276;Alias=ALU_umary_ALU_7339_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619977;submitter_variant_call_id=ALU_umary_ALU_7339_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    22395721    22395721    9    22395721    22395721    1406:mobile_element_insertion:0    .    .    .    ID=7210187;Name=essv13423490;Alias=ALU_umary_ALU_7341_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3619982;submitter_variant_call_id=ALU_umary_ALU_7341_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    22496524    22496524    9    22504349    22504349    1407:copy_number_loss:7825    .    .    .    ID=7213056;Name=essv13424484;Alias=UW_VH_766_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619987;Start_range=22496085,22496525;End_range=22504350,22504744;submitter_variant_call_id=UW_VH_766_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    22653358    22653358    9    22653767    22653767    1408:copy_number_loss:409    .    .    .    ID=7214470;Name=essv13425396;Alias=UW_VH_767_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3619990;Start_range=22652962,22653359;End_range=22653768,22654243;submitter_variant_call_id=UW_VH_767_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    22903891    22903891    9    22903891    22903891    1409:indel:0    .    .    .    ID=7216866;Name=essv13427697;Alias=PHASE3_V1_SV_1127_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620000;submitter_variant_call_id=PHASE3_V1_SV_1127_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    23362811    23362811    9    23377677    23377677    1410:copy_number_loss:14866    .    .    .    ID=7223359;Name=essv13429596;Alias=UW_VH_14741_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620012;Start_range=23362410,23362812;End_range=23377678,23378069;submitter_variant_call_id=UW_VH_14741_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    23370986    23370986    9    23372430    23372430    1411:copy_number_loss:1444    .    .    .    ID=7224323;Name=essv13430932;Alias=BI_GS_DEL1_B3_P1569_26_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620013;Start_range=23370987,23370988;End_range=23372431,23372432;submitter_variant_call_id=BI_GS_DEL1_B3_P1569_26_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    27670560    27670560    9    27670560    27670560    1412:indel:0    .    .    .    ID=7234020;Name=essv13435424;Alias=PHASE3_V1_SV_1133_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620136;submitter_variant_call_id=PHASE3_V1_SV_1133_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    28584919    28584919    9    28584919    28584919    1413:indel:0    .    .    .    ID=7239375;Name=essv13438443;Alias=PHASE3_V1_SV_1135_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620173;submitter_variant_call_id=PHASE3_V1_SV_1135_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    28960618    28960618    9    28960618    28960618    1414:mobile_element_insertion:0    .    .    .    ID=7244776;Name=essv13441294;Alias=ALU_umary_ALU_7371_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620203;submitter_variant_call_id=ALU_umary_ALU_7371_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    29092521    29092521    9    29098025    29098025    1415:copy_number_loss:5504    .    .    .    ID=7250142;Name=essv13442558;Alias=UW_VH_24937_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620205;Start_range=29092259,29092522;End_range=29098026,29098310;submitter_variant_call_id=UW_VH_24937_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    31291352    31291352    9    31292672    31292672    1416:copy_number_loss:1320    .    .    .    ID=7256744;Name=essv13446732;Alias=BI_GS_DEL1_B1_P1577_233_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620275;Start_range=31291353,31291353;End_range=31292673,31292673;submitter_variant_call_id=BI_GS_DEL1_B1_P1577_233_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    32463893    32463893    9    32463893    32463893    1417:mobile_element_insertion:0    .    .    .    ID=7263638;Name=essv13450688;Alias=L1_umary_LINE1_1822_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620298;submitter_variant_call_id=L1_umary_LINE1_1822_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    33213067    33213067    9    33213928    33213928    1418:copy_number_loss:861    .    .    .    ID=7273216;Name=essv13454065;Alias=EM_DL_DEL101120420_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620320;Start_range=33212918,33213218;End_range=33213779,33214079;submitter_variant_call_id=EM_DL_DEL101120420_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    33213124    33213124    9    33213402    33213402    1419:copy_number_loss:278    .    .    .    ID=7275474;Name=essv13455832;Alias=BI_GS_DEL1_B1_P1579_179_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620321;Start_range=33213103,33213147;End_range=33213381,33213425;submitter_variant_call_id=BI_GS_DEL1_B1_P1579_179_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    34703698    34703698    9    34703698    34703698    1420:mobile_element_insertion:0    .    .    .    ID=7281483;Name=essv13458745;Alias=SVA_umary_SVA_402_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620359;submitter_variant_call_id=SVA_umary_SVA_402_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    36362879    36362879    9    36364078    36364078    1421:copy_number_loss:1199    .    .    .    ID=7286149;Name=essv13461588;Alias=BI_GS_DEL1_B1_P1582_297_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620392;Start_range=36362880,36362880;End_range=36364079,36364079;submitter_variant_call_id=BI_GS_DEL1_B1_P1582_297_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    38767773    38767773    9    38767773    38767773    1422:mobile_element_insertion:0    .    .    .    ID=7296252;Name=essv13466793;Alias=ALU_umary_ALU_7428_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620441;submitter_variant_call_id=ALU_umary_ALU_7428_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    39002060    39002060    9    39024617    39024617    1423:copy_number_gain:22557    .    .    .    ID=7301045;Name=essv13468165;Alias=DUP_gs_CNV_9_39002061_39024618_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620445;submitter_variant_call_id=DUP_gs_CNV_9_39002061_39024618_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    39044748    39044748    9    39055763    39055763    1424:copy_number_gain:11015    .    .    .    ID=7301204;Name=essv13468220;Alias=DUP_gs_CNV_9_39044749_39055764_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620447;submitter_variant_call_id=DUP_gs_CNV_9_39044749_39055764_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    39089688    39089688    9    39125232    39125232    1425:copy_number_gain:35544    .    .    .    ID=7302102;Name=essv13468685;Alias=DUP_gs_CNV_9_39089689_39125233_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620450;submitter_variant_call_id=DUP_gs_CNV_9_39089689_39125233_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    39140765    39140765    9    39206558    39206558    1426:copy_number_gain:65793    .    .    .    ID=7302173;Name=essv13468707;Alias=DUP_gs_CNV_9_39140766_39206559_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620452;submitter_variant_call_id=DUP_gs_CNV_9_39140766_39206559_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    40609333    40609333    9    40609333    40609333    1427:mobile_element_insertion:0    .    .    .    ID=7304352;Name=essv13469543;Alias=ALU_umary_ALU_7431_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620454;submitter_variant_call_id=ALU_umary_ALU_7431_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    43392404    43392404    9    43404179    43404179    1428:copy_number_gain:11775    .    .    .    ID=7327235;Name=essv13474844;Alias=DUP_gs_CNV_9_43392405_43404180_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620465;submitter_variant_call_id=DUP_gs_CNV_9_43392405_43404180_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    43612171    43612171    9    43623149    43623149    1429:copy_number_loss:10978    .    .    .    ID=7332963;Name=essv13480513;Alias=DUP_gs_CNV_9_43612172_43623150_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620475;submitter_variant_call_id=DUP_gs_CNV_9_43612172_43623150_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    44235868    44235868    9    44252310    44252310    1430:copy_number_loss:16442    .    .    .    ID=7336290;Name=essv13483831;Alias=DUP_gs_CNV_9_44235869_44252311_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620488;submitter_variant_call_id=DUP_gs_CNV_9_44235869_44252311_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    44235868    44235868    9    44252310    44252310    1431:copy_number_gain:16442    .    .    .    ID=7337800;Name=essv13485341;Alias=DUP_gs_CNV_9_44235869_44252311_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620489;submitter_variant_call_id=DUP_gs_CNV_9_44235869_44252311_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    44255189    44255189    9    44276470    44276470    1432:copy_number_loss:21281    .    .    .    ID=7338336;Name=essv13487216;Alias=DUP_gs_CNV_9_44255190_44276471_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620490;submitter_variant_call_id=DUP_gs_CNV_9_44255190_44276471_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    45700959    45700959    9    45715410    45715410    1433:copy_number_gain:14451    .    .    .    ID=7344678;Name=essv13493180;Alias=DUP_gs_CNV_9_45700960_45715411_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620504;submitter_variant_call_id=DUP_gs_CNV_9_45700960_45715411_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    66497882    66497882    9    66537263    66537263    1434:copy_number_gain:39381    .    .    .    ID=7362127;Name=essv13497468;Alias=DUP_gs_CNV_9_66497883_66537264_A4_NA12878;variant_call_so_id=SO:0001742;parent=esv3620518;submitter_variant_call_id=DUP_gs_CNV_9_66497883_66537264_A4_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    66497882    66497882    9    66537263    66537263    1435:copy_number_gain:39381    .    .    .    ID=7363003;Name=essv13496547;Alias=DUP_gs_CNV_9_66497883_66537264_A3_NA12878;variant_call_so_id=SO:0001742;parent=esv3620517;submitter_variant_call_id=DUP_gs_CNV_9_66497883_66537264_A3_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    68354130    68354130    9    68388435    68388435    1436:copy_number_gain:34305    .    .    .    ID=7369759;Name=essv13500856;Alias=DUP_gs_CNV_9_68354131_68388436_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3620531;submitter_variant_call_id=DUP_gs_CNV_9_68354131_68388436_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    69794965    69794965    9    69839047    69839047    1437:copy_number_gain:44082    .    .    .    ID=7380603;Name=essv13503966;Alias=DUP_gs_CNV_9_69794966_69839048_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3620538;submitter_variant_call_id=DUP_gs_CNV_9_69794966_69839048_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    69794965    69794965    9    69839047    69839047    1438:copy_number_gain:44082    .    .    .    ID=7381430;Name=essv13504839;Alias=DUP_gs_CNV_9_69794966_69839048_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3620539;submitter_variant_call_id=DUP_gs_CNV_9_69794966_69839048_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    71738118    71738118    9    71743358    71743358    1439:copy_number_loss:5240    .    .    .    ID=7385373;Name=essv13506569;Alias=BI_GS_DEL1_B1_P1617_688_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620552;Start_range=71738119,71738119;End_range=71743359,71743359;submitter_variant_call_id=BI_GS_DEL1_B1_P1617_688_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    71804519    71804519    9    71804996    71804996    1440:copy_number_loss:477    .    .    .    ID=7387003;Name=essv13508406;Alias=BI_GS_DEL1_B1_P1617_739_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620554;Start_range=71804520,71804520;End_range=71804997,71804997;submitter_variant_call_id=BI_GS_DEL1_B1_P1617_739_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    71895337    71895337    9    71896536    71896536    1441:copy_number_loss:1199    .    .    .    ID=7389892;Name=essv13510587;Alias=SI_BD_9796_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620556;Start_range=71895046,71895389;End_range=71896487,71896829;submitter_variant_call_id=SI_BD_9796_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    74544791    74544791    9    74544791    74544791    1442:mobile_element_insertion:0    .    .    .    ID=7405508;Name=essv13515311;Alias=ALU_umary_ALU_7458_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620618;submitter_variant_call_id=ALU_umary_ALU_7458_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    75542984    75542984    9    75542984    75542984    1443:mobile_element_insertion:0    .    .    .    ID=7409712;Name=essv13518155;Alias=ALU_umary_ALU_7470_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620654;submitter_variant_call_id=ALU_umary_ALU_7470_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    76238786    76238786    9    76238786    76238786    1444:mobile_element_insertion:0    .    .    .    ID=7412466;Name=essv13519968;Alias=ALU_umary_ALU_7477_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620677;submitter_variant_call_id=ALU_umary_ALU_7477_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    76723956    76723956    9    76723956    76723956    1445:indel:0    .    .    .    ID=7414742;Name=essv13521820;Alias=PHASE3_V1_SV_1146_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620691;submitter_variant_call_id=PHASE3_V1_SV_1146_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    76860921    76860921    9    76860921    76860921    1446:indel:0    .    .    .    ID=7419157;Name=essv13524134;Alias=PHASE3_V1_SV_1147_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620696;submitter_variant_call_id=PHASE3_V1_SV_1147_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    78952064    78952064    9    78952064    78952064    1447:mobile_element_insertion:0    .    .    .    ID=7427098;Name=essv13528187;Alias=ALU_umary_ALU_7493_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620742;submitter_variant_call_id=ALU_umary_ALU_7493_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    79770017    79770017    9    79778661    79778661    1448:copy_number_gain:8644    .    .    .    ID=7432424;Name=essv13531828;Alias=DUP_gs_CNV_9_79770018_79778662_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3620765;submitter_variant_call_id=DUP_gs_CNV_9_79770018_79778662_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    82082792    82082792    9    82082792    82082792    1449:mobile_element_insertion:0    .    .    .    ID=7439230;Name=essv13535005;Alias=L1_umary_LINE1_1854_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3620831;submitter_variant_call_id=L1_umary_LINE1_1854_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    83071619    83071619    9    83072068    83072068    1450:copy_number_loss:449    .    .    .    ID=7440134;Name=essv13535708;Alias=UW_VH_11701_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620851;Start_range=83071251,83071620;End_range=83072069,83072467;submitter_variant_call_id=UW_VH_11701_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    83967914    83967914    9    83970681    83970681    1451:copy_number_loss:2767    .    .    .    ID=7445797;Name=essv13538286;Alias=BI_GS_DEL1_B2_P1629_629_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620869;Start_range=83967915,83967915;End_range=83970682,83970682;submitter_variant_call_id=BI_GS_DEL1_B2_P1629_629_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    85846104    85846104    9    85846104    85846104    1452:indel:0    .    .    .    ID=7448942;Name=essv13540476;Alias=PHASE3_V1_SV_1154_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3620897;submitter_variant_call_id=PHASE3_V1_SV_1154_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    89154575    89154575    9    89155911    89155911    1453:copy_number_loss:1336    .    .    .    ID=7460509;Name=essv13545978;Alias=SI_BD_9886_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3620958;Start_range=89154358,89154626;End_range=89155862,89156130;submitter_variant_call_id=SI_BD_9886_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    93057521    93057521    9    93057521    93057521    1454:mobile_element_insertion:0    .    .    .    ID=7477583;Name=essv13553470;Alias=ALU_umary_ALU_7554_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621042;submitter_variant_call_id=ALU_umary_ALU_7554_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    93194543    93194543    9    93194543    93194543    1455:mobile_element_insertion:0    .    .    .    ID=7479264;Name=essv13555076;Alias=ALU_umary_ALU_7555_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621047;submitter_variant_call_id=ALU_umary_ALU_7555_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    94397333    94397333    9    94397333    94397333    1456:indel:0    .    .    .    ID=7492487;Name=essv13558343;Alias=PHASE3_V1_SV_1160_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621068;submitter_variant_call_id=PHASE3_V1_SV_1160_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    94416768    94416768    9    94416768    94416768    1457:mobile_element_insertion:0    .    .    .    ID=7493173;Name=essv13559204;Alias=L1_umary_LINE1_1864_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621069;submitter_variant_call_id=L1_umary_LINE1_1864_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    95680507    95680507    9    95680507    95680507    1458:mobile_element_insertion:0    .    .    .    ID=7495855;Name=essv13559835;Alias=ALU_umary_ALU_7563_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621093;submitter_variant_call_id=ALU_umary_ALU_7563_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    96500166    96500166    9    96503036    96503036    1459:copy_number_loss:2870    .    .    .    ID=7503823;Name=essv13566882;Alias=UW_VH_794_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621108;Start_range=96499748,96500167;End_range=96503037,96503508;submitter_variant_call_id=UW_VH_794_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    97042260    97042260    9    97244348    97244348    1460:copy_number_gain:202088    .    .    .    ID=7506779;Name=essv13569045;Alias=DUP_uwash_chr9_97042261_97244349_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3621117;submitter_variant_call_id=DUP_uwash_chr9_97042261_97244349_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    97314255    97314255    9    97314255    97314255    1461:mobile_element_insertion:0    .    .    .    ID=7507994;Name=essv13570529;Alias=ALU_umary_ALU_7569_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621131;submitter_variant_call_id=ALU_umary_ALU_7569_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    100675549    100675549    9    100675549    100675549    1462:mobile_element_insertion:0    .    .    .    ID=7519733;Name=essv13574152;Alias=L1_umary_LINE1_1867_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621196;submitter_variant_call_id=L1_umary_LINE1_1867_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    101309041    101309041    9    101311667    101311667    1463:copy_number_loss:2626    .    .    .    ID=7523018;Name=essv13576839;Alias=BI_GS_DEL1_B1_P1647_344_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621211;Start_range=101309042,101309042;End_range=101311668,101311668;submitter_variant_call_id=BI_GS_DEL1_B1_P1647_344_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    101347966    101347966    9    101348321    101348321    1464:copy_number_loss:355    .    .    .    ID=7523997;Name=essv13578629;Alias=BI_GS_DEL1_B5_P1647_467_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621213;Start_range=101347966,101347968;End_range=101348321,101348323;submitter_variant_call_id=BI_GS_DEL1_B5_P1647_467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    103223412    103223412    9    103223412    103223412    1465:mobile_element_insertion:0    .    .    .    ID=7534805;Name=essv13580614;Alias=ALU_umary_ALU_7595_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621230;submitter_variant_call_id=ALU_umary_ALU_7595_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    104219698    104219698    9    104220377    104220377    1466:copy_number_loss:679    .    .    .    ID=7539661;Name=essv13583356;Alias=BI_GS_DEL1_B3_P1650_12_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621252;Start_range=104219699,104219699;End_range=104220378,104220378;submitter_variant_call_id=BI_GS_DEL1_B3_P1650_12_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    104223874    104223874    9    104223874    104223874    1467:mobile_element_insertion:0    .    .    .    ID=7540369;Name=essv13584277;Alias=ALU_umary_ALU_7606_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621253;submitter_variant_call_id=ALU_umary_ALU_7606_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    104714843    104714843    9    104724481    104724481    1468:copy_number_loss:9638    .    .    .    ID=7541750;Name=essv13585235;Alias=BI_GS_DEL1_B2_P1650_582_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621266;Start_range=104714844,104714844;End_range=104724482,104724482;submitter_variant_call_id=BI_GS_DEL1_B2_P1650_582_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    105450618    105450618    9    105450618    105450618    1469:mobile_element_insertion:0    .    .    .    ID=7545011;Name=essv13587569;Alias=ALU_umary_ALU_7615_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621288;submitter_variant_call_id=ALU_umary_ALU_7615_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    105834214    105834214    9    105834214    105834214    1470:indel:0    .    .    .    ID=7547131;Name=essv13589140;Alias=PHASE3_V1_SV_1168_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621305;submitter_variant_call_id=PHASE3_V1_SV_1168_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    106568285    106568285    9    106569742    106569742    1471:copy_number_loss:1457    .    .    .    ID=7549306;Name=essv13591024;Alias=BI_GS_DEL1_B1_P1652_412_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621323;Start_range=106568286,106568286;End_range=106569743,106569743;submitter_variant_call_id=BI_GS_DEL1_B1_P1652_412_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    109235273    109235273    9    109235273    109235273    1472:mobile_element_insertion:0    .    .    .    ID=7554179;Name=essv13593835;Alias=ALU_umary_ALU_7630_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621380;submitter_variant_call_id=ALU_umary_ALU_7630_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    113491535    113491535    9    113491535    113491535    1473:mobile_element_insertion:0    .    .    .    ID=7572109;Name=essv13600326;Alias=ALU_umary_ALU_7654_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621471;submitter_variant_call_id=ALU_umary_ALU_7654_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    113571249    113571249    9    113571249    113571249    1474:mobile_element_insertion:0    .    .    .    ID=7572526;Name=essv13600868;Alias=ALU_umary_ALU_7655_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621472;submitter_variant_call_id=ALU_umary_ALU_7655_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    114736428    114736428    9    114736428    114736428    1475:indel:0    .    .    .    ID=7576520;Name=essv13604581;Alias=PHASE3_V1_SV_1174_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621499;submitter_variant_call_id=PHASE3_V1_SV_1174_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    117928280    117928280    9    117928280    117928280    1476:mobile_element_insertion:0    .    .    .    ID=7586218;Name=essv13608493;Alias=ALU_umary_ALU_7672_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621566;submitter_variant_call_id=ALU_umary_ALU_7672_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    118509751    118509751    9    118509751    118509751    1477:mobile_element_insertion:0    .    .    .    ID=7586805;Name=essv13609090;Alias=ALU_umary_ALU_7676_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621576;submitter_variant_call_id=ALU_umary_ALU_7676_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    123055183    123055183    9    123055183    123055183    1478:mobile_element_insertion:0    .    .    .    ID=7597512;Name=essv13614626;Alias=ALU_umary_ALU_7688_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621649;submitter_variant_call_id=ALU_umary_ALU_7688_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    131412055    131412055    9    131413975    131413975    1479:copy_number_loss:1920    .    .    .    ID=7621098;Name=essv13624334;Alias=EM_DL_DEL101148848_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621812;Start_range=131411906,131412206;End_range=131413826,131414126;submitter_variant_call_id=EM_DL_DEL101148848_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    131700956    131700956    9    131702149    131702149    1480:copy_number_loss:1193    .    .    .    ID=7624891;Name=essv13625844;Alias=UW_VH_1515_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621821;Start_range=131700494,131700957;End_range=131702150,131702685;submitter_variant_call_id=UW_VH_1515_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    132026729    132026729    9    132028135    132028135    1481:copy_number_loss:1406    .    .    .    ID=7626658;Name=essv13627613;Alias=SI_BD_10130_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621828;Start_range=132026405,132026827;End_range=132028045,132028461;submitter_variant_call_id=SI_BD_10130_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    133030639    133030639    9    133034804    133034804    1482:copy_number_loss:4165    .    .    .    ID=7634221;Name=essv13629476;Alias=BI_GS_DEL1_B1_P1679_29_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621858;Start_range=133030640,133030640;End_range=133034805,133034805;submitter_variant_call_id=BI_GS_DEL1_B1_P1679_29_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    133305014    133305014    9    133305014    133305014    1483:indel:0    .    .    .    ID=7634820;Name=essv13629731;Alias=PHASE3_V1_SV_1186_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621861;submitter_variant_call_id=PHASE3_V1_SV_1186_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    134289810    134289810    9    134289810    134289810    1484:mobile_element_insertion:0    .    .    .    ID=7639523;Name=essv13632240;Alias=SVA_umary_SVA_430_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3621886;submitter_variant_call_id=SVA_umary_SVA_430_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    135296997    135296997    9    135296997    135296997    1485:indel:0    .    .    .    ID=7647947;Name=essv13635166;Alias=PHASE3_V1_SV_1190_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621914;submitter_variant_call_id=PHASE3_V1_SV_1190_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    135687917    135687917    9    135687917    135687917    1486:indel:0    .    .    .    ID=7656857;Name=essv13637716;Alias=PHASE3_V1_SV_1193_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621924;submitter_variant_call_id=PHASE3_V1_SV_1193_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    136625166    136625166    9    136626267    136626267    1487:copy_number_loss:1101    .    .    .    ID=7663690;Name=essv13640621;Alias=UW_VH_25134_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621943;Start_range=136624918,136625167;End_range=136626268,136626655;submitter_variant_call_id=UW_VH_25134_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    137268432    137268432    9    137268432    137268432    1488:indel:0    .    .    .    ID=7665735;Name=essv13643068;Alias=PHASE3_V1_SV_1199_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621960;submitter_variant_call_id=PHASE3_V1_SV_1199_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    137684703    137684703    9    137684703    137684703    1489:indel:0    .    .    .    ID=7670872;Name=essv13645147;Alias=PHASE3_V1_SV_1200_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621968;submitter_variant_call_id=PHASE3_V1_SV_1200_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    137690415    137690415    9    137690415    137690415    1490:indel:0    .    .    .    ID=7673907;Name=essv13647358;Alias=PHASE3_V1_SV_1201_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621969;submitter_variant_call_id=PHASE3_V1_SV_1201_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
9    138207941    138207941    9    138207941    138207941    1491:indel:0    .    .    .    ID=7678955;Name=essv13649405;Alias=PHASE3_V1_SV_1203_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3621982;submitter_variant_call_id=PHASE3_V1_SV_1203_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    138214059    138214059    9    138217602    138217602    1492:copy_number_loss:3543    .    .    .    ID=7681126;Name=essv13650999;Alias=UW_VH_17355_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621983;Start_range=138213516,138214060;End_range=138217603,138218135;submitter_variant_call_id=UW_VH_17355_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    138479099    138479099    9    138480203    138480203    1493:copy_number_loss:1104    .    .    .    ID=7682292;Name=essv13653699;Alias=BI_GS_DEL1_B1_P1684_388_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3621995;Start_range=138479100,138479100;End_range=138480204,138480204;submitter_variant_call_id=BI_GS_DEL1_B1_P1684_388_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    140253526    140253526    9    140255972    140255972    1494:copy_number_loss:2446    .    .    .    ID=7689017;Name=essv13659706;Alias=UW_VH_816_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622030;Start_range=140253104,140253527;End_range=140255973,140256400;submitter_variant_call_id=UW_VH_816_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
9    141075378    141075378    9    141075378    141075378    1495:mobile_element_insertion:0    .    .    .    ID=7692782;Name=essv13663226;Alias=L1_umary_LINE1_1896_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622060;submitter_variant_call_id=L1_umary_LINE1_1896_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    2077559    2077559    10    2077559    2077559    1496:mobile_element_insertion:0    .    .    .    ID=7701062;Name=essv13667160;Alias=ALU_umary_ALU_7741_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622121;submitter_variant_call_id=ALU_umary_ALU_7741_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    2241010    2241010    10    2241010    2241010    1497:mobile_element_insertion:0    .    .    .    ID=7702955;Name=essv13668274;Alias=ALU_umary_ALU_7742_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622123;submitter_variant_call_id=ALU_umary_ALU_7742_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    2519717    2519717    10    2519717    2519717    1498:indel:0    .    .    .    ID=7709001;Name=essv13670998;Alias=PHASE3_V1_SV_1209_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622129;submitter_variant_call_id=PHASE3_V1_SV_1209_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    2568716    2568716    10    2568716    2568716    1499:indel:0    .    .    .    ID=7712267;Name=essv13672866;Alias=PHASE3_V1_SV_1210_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622131;submitter_variant_call_id=PHASE3_V1_SV_1210_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    3128004    3128004    10    3128004    3128004    1500:indel:0    .    .    .    ID=7723446;Name=essv13678161;Alias=PHASE3_V1_SV_1212_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622162;submitter_variant_call_id=PHASE3_V1_SV_1212_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    3569024    3569024    10    3569024    3569024    1501:mobile_element_insertion:0    .    .    .    ID=7727020;Name=essv13680043;Alias=ALU_umary_ALU_7750_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622179;submitter_variant_call_id=ALU_umary_ALU_7750_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    4290057    4290057    10    4291689    4291689    1502:copy_number_loss:1632    .    .    .    ID=7731252;Name=essv13682173;Alias=UW_VH_11588_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622189;Start_range=4289514,4290058;End_range=4291690,4292172;submitter_variant_call_id=UW_VH_11588_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    4708522    4708522    10    4710519    4710519    1503:copy_number_loss:1997    .    .    .    ID=7734738;Name=essv13684583;Alias=BI_GS_DEL1_B1_P1692_679_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622204;Start_range=4708523,4708523;End_range=4710520,4710520;submitter_variant_call_id=BI_GS_DEL1_B1_P1692_679_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    5889588    5889588    10    5892806    5892806    1504:copy_number_loss:3218    .    .    .    ID=7740346;Name=essv13686719;Alias=UW_VH_818_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622236;Start_range=5889016,5889589;End_range=5892807,5893300;submitter_variant_call_id=UW_VH_818_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    7077040    7077040    10    7078302    7078302    1505:copy_number_loss:1262    .    .    .    ID=7744546;Name=essv13689048;Alias=BI_GS_DEL1_B2_P1695_66_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622263;Start_range=7077041,7077041;End_range=7078303,7078303;submitter_variant_call_id=BI_GS_DEL1_B2_P1695_66_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    9474854    9474854    10    9474854    9474854    1506:mobile_element_insertion:0    .    .    .    ID=7752022;Name=essv13691319;Alias=ALU_umary_ALU_7778_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622306;submitter_variant_call_id=ALU_umary_ALU_7778_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    9510993    9510993    10    9510993    9510993    1507:mobile_element_insertion:0    .    .    .    ID=7753703;Name=essv13693339;Alias=ALU_umary_ALU_7779_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622310;submitter_variant_call_id=ALU_umary_ALU_7779_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    9904406    9904406    10    9904406    9904406    1508:mobile_element_insertion:0    .    .    .    ID=7756064;Name=essv13694914;Alias=ALU_umary_ALU_7781_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622318;submitter_variant_call_id=ALU_umary_ALU_7781_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    12457218    12457218    10    12457218    12457218    1509:mobile_element_insertion:0    .    .    .    ID=7759768;Name=essv13696526;Alias=ALU_umary_ALU_7792_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622372;submitter_variant_call_id=ALU_umary_ALU_7792_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    12596182    12596182    10    12596569    12596569    1510:copy_number_loss:387    .    .    .    ID=7761253;Name=essv13697412;Alias=BI_GS_DEL1_B5_P1700_571_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622381;Start_range=12596183,12596184;End_range=12596570,12596571;submitter_variant_call_id=BI_GS_DEL1_B5_P1700_571_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    13104901    13104901    10    13105296    13105296    1511:inversion:395    .    .    .    ID=7765494;Name=essv13699478;Alias=INV_delly_INV00010543_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3622398;Start_range=13104682,13105122;End_range=13105077,13105517;submitter_variant_call_id=INV_delly_INV00010543_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    14396697    14396697    10    14396697    14396697    1512:mobile_element_insertion:0    .    .    .    ID=7769548;Name=essv13701247;Alias=ALU_umary_ALU_7798_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622421;submitter_variant_call_id=ALU_umary_ALU_7798_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    14484813    14484813    10    14484813    14484813    1513:mobile_element_insertion:0    .    .    .    ID=7772862;Name=essv13702736;Alias=ALU_umary_ALU_7799_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622423;submitter_variant_call_id=ALU_umary_ALU_7799_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    18503072    18503072    10    18503588    18503588    1514:copy_number_loss:516    .    .    .    ID=7785717;Name=essv13709607;Alias=BI_GS_DEL1_B1_P1706_255_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622503;Start_range=18503073,18503073;End_range=18503589,18503589;submitter_variant_call_id=BI_GS_DEL1_B1_P1706_255_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    19996543    19996543    10    19998178    19998178    1515:copy_number_loss:1635    .    .    .    ID=7794242;Name=essv13713353;Alias=YL_CN_PEL_2120_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622545;Start_range=19995544,19997044;End_range=19997679,19999179;submitter_variant_call_id=YL_CN_PEL_2120_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    21688238    21688238    10    21688238    21688238    1516:mobile_element_insertion:0    .    .    .    ID=7797941;Name=essv13715375;Alias=ALU_umary_ALU_7832_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622580;submitter_variant_call_id=ALU_umary_ALU_7832_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    22867587    22867587    10    22867587    22867587    1517:mobile_element_insertion:0    .    .    .    ID=7798742;Name=essv13715523;Alias=ALU_umary_ALU_7836_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622596;submitter_variant_call_id=ALU_umary_ALU_7836_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    24376837    24376837    10    24378444    24378444    1518:copy_number_loss:1607    .    .    .    ID=7803803;Name=essv13718484;Alias=BI_GS_DEL1_B2_P1712_268_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622628;Start_range=24376838,24376838;End_range=24378445,24378445;submitter_variant_call_id=BI_GS_DEL1_B2_P1712_268_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    25035186    25035186    10    25035186    25035186    1519:indel:0    .    .    .    ID=7809426;Name=essv13720685;Alias=PHASE3_V1_SV_1223_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622651;submitter_variant_call_id=PHASE3_V1_SV_1223_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    25707714    25707714    10    25707714    25707714    1520:mobile_element_insertion:0    .    .    .    ID=7816859;Name=essv13723940;Alias=L1_umary_LINE1_1934_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622667;submitter_variant_call_id=L1_umary_LINE1_1934_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    26163400    26163400    10    26163400    26163400    1521:indel:0    .    .    .    ID=7823134;Name=essv13727413;Alias=PHASE3_V1_SV_1224_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622678;submitter_variant_call_id=PHASE3_V1_SV_1224_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    26225948    26225948    10    26225948    26225948    1522:mobile_element_insertion:0    .    .    .    ID=7824193;Name=essv13728366;Alias=ALU_umary_ALU_7856_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622683;submitter_variant_call_id=ALU_umary_ALU_7856_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    27224090    27224090    10    27228167    27228167    1523:copy_number_loss:4077    .    .    .    ID=7831840;Name=essv13732088;Alias=YL_CN_STU_2356_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622704;Start_range=27223091,27224591;End_range=27227668,27229168;submitter_variant_call_id=YL_CN_STU_2356_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    27929927    27929927    10    27929927    27929927    1524:mobile_element_insertion:0    .    .    .    ID=7839790;Name=essv13734617;Alias=ALU_umary_ALU_7862_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622730;submitter_variant_call_id=ALU_umary_ALU_7862_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    27945178    27945178    10    27945178    27945178    1525:indel:0    .    .    .    ID=7841877;Name=essv13736815;Alias=PHASE3_V1_SV_1226_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622731;submitter_variant_call_id=PHASE3_V1_SV_1226_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    29102540    29102540    10    29102540    29102540    1526:mobile_element_insertion:0    .    .    .    ID=7849570;Name=essv13740115;Alias=ALU_umary_ALU_7873_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622757;submitter_variant_call_id=ALU_umary_ALU_7873_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    29105297    29105297    10    29105297    29105297    1527:mobile_element_insertion:0    .    .    .    ID=7851779;Name=essv13741615;Alias=ALU_umary_ALU_7874_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622758;submitter_variant_call_id=ALU_umary_ALU_7874_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    29742212    29742212    10    29742934    29742934    1528:copy_number_loss:722    .    .    .    ID=7855516;Name=essv13742922;Alias=BI_GS_DEL1_B3_P1717_26_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622773;Start_range=29742202,29742225;End_range=29742924,29742947;submitter_variant_call_id=BI_GS_DEL1_B3_P1717_26_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    29883209    29883209    10    29883209    29883209    1529:indel:0    .    .    .    ID=7856907;Name=essv13744253;Alias=PHASE3_V1_SV_1228_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3622776;submitter_variant_call_id=PHASE3_V1_SV_1228_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    31246747    31246747    10    31251765    31251765    1530:copy_number_loss:5018    .    .    .    ID=7862869;Name=essv13746285;Alias=BI_GS_DEL1_B3_P1719_13_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622800;Start_range=31246748,31246749;End_range=31251766,31251767;submitter_variant_call_id=BI_GS_DEL1_B3_P1719_13_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    31443353    31443353    10    31444867    31444867    1531:copy_number_loss:1514    .    .    .    ID=7863579;Name=essv13747382;Alias=BI_GS_DEL1_B2_P1719_373_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622802;Start_range=31443354,31443354;End_range=31444868,31444868;submitter_variant_call_id=BI_GS_DEL1_B2_P1719_373_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    31443803    31443803    10    31444138    31444138    1532:copy_number_loss:335    .    .    .    ID=7865049;Name=essv13748781;Alias=BI_GS_DEL1_B1_P1719_399_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3622803;Start_range=31443749,31443860;End_range=31444084,31444195;submitter_variant_call_id=BI_GS_DEL1_B1_P1719_399_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    35995067    35995067    10    35995067    35995067    1533:mobile_element_insertion:0    .    .    .    ID=7875627;Name=essv13753472;Alias=ALU_umary_ALU_7906_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622904;submitter_variant_call_id=ALU_umary_ALU_7906_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    36593633    36593633    10    36593633    36593633    1534:mobile_element_insertion:0    .    .    .    ID=7880500;Name=essv13756044;Alias=ALU_umary_ALU_7910_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622919;submitter_variant_call_id=ALU_umary_ALU_7910_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    42674016    42674016    10    42674016    42674016    1535:mobile_element_insertion:0    .    .    .    ID=7891182;Name=essv13759192;Alias=ALU_umary_ALU_7920_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3622999;submitter_variant_call_id=ALU_umary_ALU_7920_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    42701552    42701552    10    42716790    42716790    1536:copy_number_loss:15238    .    .    .    ID=7892804;Name=essv13760714;Alias=BI_GS_DEL1_B1_P1730_64_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623000;Start_range=42701553,42701553;End_range=42716791,42716791;submitter_variant_call_id=BI_GS_DEL1_B1_P1730_64_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    42857630    42857630    10    42929900    42929900    1537:copy_number_gain:72270    .    .    .    ID=7895243;Name=essv13763097;Alias=DUP_uwash_chr10_42857631_42929901_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623004;submitter_variant_call_id=DUP_uwash_chr10_42857631_42929901_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    45570008    45570008    10    45804480    45804480    1538:copy_number_gain:234472    .    .    .    ID=7904443;Name=essv13766898;Alias=DUP_uwash_chr10_45570009_45804481_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623082;submitter_variant_call_id=DUP_uwash_chr10_45570009_45804481_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    45601387    45601387    10    45646801    45646801    1539:copy_number_gain:45414    .    .    .    ID=7907847;Name=essv13769402;Alias=DUP_uwash_chr10_45601388_45646802_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623083;submitter_variant_call_id=DUP_uwash_chr10_45601388_45646802_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    46262156    46262156    10    46305351    46305351    1540:copy_number_gain:43195    .    .    .    ID=7920192;Name=essv13772713;Alias=DUP_uwash_chr10_46262157_46305352_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623107;submitter_variant_call_id=DUP_uwash_chr10_46262157_46305352_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    46551271    46551271    10    46693057    46693057    1541:copy_number_gain:141786    .    .    .    ID=7927863;Name=essv13775272;Alias=DUP_uwash_chr10_46551272_46693058_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623110;submitter_variant_call_id=DUP_uwash_chr10_46551272_46693058_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    46976291    46976291    10    47023560    47023560    1542:copy_number_gain:47269    .    .    .    ID=7936484;Name=essv13777835;Alias=DUP_gs_CNV_10_46976292_47023561_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623112;submitter_variant_call_id=DUP_gs_CNV_10_46976292_47023561_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    47007969    47007969    10    47086709    47086709    1543:copy_number_gain:78740    .    .    .    ID=7939508;Name=essv13780736;Alias=DUP_gs_CNV_10_47007970_47086710_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623115;submitter_variant_call_id=DUP_gs_CNV_10_47007970_47086710_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    47089971    47089971    10    47150812    47150812    1544:copy_number_gain:60841    .    .    .    ID=7941828;Name=essv13783632;Alias=DUP_gs_CNV_10_47089972_47150813_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623118;submitter_variant_call_id=DUP_gs_CNV_10_47089972_47150813_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    47894774    47894774    10    47999750    47999750    1545:copy_number_gain:104976    .    .    .    ID=7948164;Name=essv13787723;Alias=DUP_uwash_chr10_47894775_47999751_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623137;submitter_variant_call_id=DUP_uwash_chr10_47894775_47999751_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    48419951    48419951    10    48419951    48419951    1546:mobile_element_insertion:0    .    .    .    ID=7953055;Name=essv13790488;Alias=ALU_umary_ALU_7936_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623143;submitter_variant_call_id=ALU_umary_ALU_7936_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    48751828    48751828    10    48880553    48880553    1547:copy_number_gain:128725    .    .    .    ID=7955883;Name=essv13792632;Alias=DUP_uwash_chr10_48751828_48880554_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623147;submitter_variant_call_id=DUP_uwash_chr10_48751828_48880554_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    49289918    49289918    10    49390674    49390674    1548:copy_number_gain:100756    .    .    .    ID=7958696;Name=essv13795232;Alias=DUP_uwash_chr10_49289919_49390675_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623149;submitter_variant_call_id=DUP_uwash_chr10_49289919_49390675_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    51300881    51300881    10    51397653    51397653    1549:copy_number_gain:96772    .    .    .    ID=7967480;Name=essv13798908;Alias=DUP_uwash_chr10_51300882_51397654_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623182;submitter_variant_call_id=DUP_uwash_chr10_51300882_51397654_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    51600128    51600128    10    51694239    51694239    1550:copy_number_gain:94111    .    .    .    ID=7971987;Name=essv13801666;Alias=DUP_uwash_chr10_51600129_51694240_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3623189;submitter_variant_call_id=DUP_uwash_chr10_51600129_51694240_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    53203692    53203692    10    53214226    53214226    1551:copy_number_loss:10534    .    .    .    ID=7983466;Name=essv13803827;Alias=BI_GS_DEL1_B3_P1741_9_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623233;Start_range=53203673,53203714;End_range=53214207,53214248;submitter_variant_call_id=BI_GS_DEL1_B3_P1741_9_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    53828729    53828729    10    53828729    53828729    1552:indel:0    .    .    .    ID=7985534;Name=essv13805490;Alias=PHASE3_V1_SV_1240_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3623240;submitter_variant_call_id=PHASE3_V1_SV_1240_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    54466941    54466941    10    54466941    54466941    1553:mobile_element_insertion:0    .    .    .    ID=7993758;Name=essv13810349;Alias=ALU_umary_ALU_7961_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623254;submitter_variant_call_id=ALU_umary_ALU_7961_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    54805969    54805969    10    54805969    54805969    1554:mobile_element_insertion:0    .    .    .    ID=7996466;Name=essv13813507;Alias=ALU_umary_ALU_7967_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623278;submitter_variant_call_id=ALU_umary_ALU_7967_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    56140322    56140322    10    56140322    56140322    1555:mobile_element_insertion:0    .    .    .    ID=8004446;Name=essv13817195;Alias=ALU_umary_ALU_7971_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623310;submitter_variant_call_id=ALU_umary_ALU_7971_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    56181260    56181260    10    56181260    56181260    1556:mobile_element_insertion:0    .    .    .    ID=8004869;Name=essv13817669;Alias=ALU_umary_ALU_7972_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623313;submitter_variant_call_id=ALU_umary_ALU_7972_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    56664658    56664658    10    56664658    56664658    1557:mobile_element_insertion:0    .    .    .    ID=8008290;Name=essv13818254;Alias=ALU_umary_ALU_7975_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623325;submitter_variant_call_id=ALU_umary_ALU_7975_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    56902377    56902377    10    56902377    56902377    1558:mobile_element_insertion:0    .    .    .    ID=8011405;Name=essv13820844;Alias=ALU_umary_ALU_7977_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623332;submitter_variant_call_id=ALU_umary_ALU_7977_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    57974631    57974631    10    57974631    57974631    1559:mobile_element_insertion:0    .    .    .    ID=8016840;Name=essv13823014;Alias=ALU_umary_ALU_7984_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623379;submitter_variant_call_id=ALU_umary_ALU_7984_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    59209792    59209792    10    59211847    59211847    1560:copy_number_loss:2055    .    .    .    ID=8021640;Name=essv13826415;Alias=UW_VH_846_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623420;Start_range=59209237,59209793;End_range=59211848,59212295;submitter_variant_call_id=UW_VH_846_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    59256851    59256851    10    59258099    59258099    1561:copy_number_loss:1248    .    .    .    ID=8024407;Name=essv13828278;Alias=YL_CN_TSI_2347_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623422;Start_range=59255852,59257352;End_range=59257600,59259100;submitter_variant_call_id=YL_CN_TSI_2347_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    60984920    60984920    10    60984920    60984920    1562:mobile_element_insertion:0    .    .    .    ID=8028733;Name=essv13830583;Alias=ALU_umary_ALU_8005_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623448;submitter_variant_call_id=ALU_umary_ALU_8005_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    62124857    62124857    10    62124857    62124857    1563:mobile_element_insertion:0    .    .    .    ID=8032262;Name=essv13832749;Alias=ALU_umary_ALU_8012_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623465;submitter_variant_call_id=ALU_umary_ALU_8012_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    65509250    65509250    10    65511404    65511404    1564:copy_number_loss:2154    .    .    .    ID=8041446;Name=essv13835733;Alias=BI_GS_DEL1_B1_P1753_367_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623512;Start_range=65509251,65509251;End_range=65511405,65511405;submitter_variant_call_id=BI_GS_DEL1_B1_P1753_367_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    67431002    67431002    10    67431002    67431002    1565:mobile_element_insertion:0    .    .    .    ID=8053454;Name=essv13841817;Alias=ALU_umary_ALU_8038_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623579;submitter_variant_call_id=ALU_umary_ALU_8038_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    68084664    68084664    10    68084664    68084664    1566:mobile_element_insertion:0    .    .    .    ID=8057508;Name=essv13842423;Alias=ALU_umary_ALU_8044_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623604;submitter_variant_call_id=ALU_umary_ALU_8044_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    69486468    69486468    10    69486468    69486468    1567:indel:0    .    .    .    ID=8069878;Name=essv13847842;Alias=PHASE3_V1_SV_1248_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3623692;submitter_variant_call_id=PHASE3_V1_SV_1248_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    69994905    69994905    10    69994905    69994905    1568:mobile_element_insertion:0    .    .    .    ID=8075239;Name=essv13850135;Alias=ALU_umary_ALU_8067_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623709;submitter_variant_call_id=ALU_umary_ALU_8067_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    70361601    70361601    10    70361601    70361601    1569:mobile_element_insertion:0    .    .    .    ID=8076580;Name=essv13851445;Alias=ALU_umary_ALU_8070_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623724;submitter_variant_call_id=ALU_umary_ALU_8070_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    70973333    70973333    10    70973333    70973333    1570:mobile_element_insertion:0    .    .    .    ID=8080921;Name=essv13854908;Alias=SVA_umary_SVA_452_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623738;submitter_variant_call_id=SVA_umary_SVA_452_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    71280916    71280916    10    71291283    71291283    1571:copy_number_loss:10367    .    .    .    ID=8081601;Name=essv13855543;Alias=YL_CN_GWD_3366_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623747;Start_range=71279917,71281417;End_range=71290784,71292284;submitter_variant_call_id=YL_CN_GWD_3366_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    71308747    71308747    10    71308747    71308747    1572:mobile_element_insertion:0    .    .    .    ID=8082327;Name=essv13856202;Alias=ALU_umary_ALU_8074_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623748;submitter_variant_call_id=ALU_umary_ALU_8074_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    71610174    71610174    10    71610174    71610174    1573:mobile_element_insertion:0    .    .    .    ID=8084316;Name=essv13857898;Alias=ALU_umary_ALU_8076_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623756;submitter_variant_call_id=ALU_umary_ALU_8076_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    72448734    72448734    10    72451342    72451342    1574:copy_number_loss:2608    .    .    .    ID=8086948;Name=essv13859021;Alias=UW_VH_24123_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623768;Start_range=72448518,72448735;End_range=72451343,72451561;submitter_variant_call_id=UW_VH_24123_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    73193546    73193546    10    73193546    73193546    1575:mobile_element_insertion:0    .    .    .    ID=8088666;Name=essv13860474;Alias=ALU_umary_ALU_8081_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623775;submitter_variant_call_id=ALU_umary_ALU_8081_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    73662005    73662005    10    73662005    73662005    1576:mobile_element_insertion:0    .    .    .    ID=8091455;Name=essv13861354;Alias=ALU_umary_ALU_8083_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3623784;submitter_variant_call_id=ALU_umary_ALU_8083_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    78255574    78255574    10    78261020    78261020    1577:copy_number_loss:5446    .    .    .    ID=8098524;Name=essv13865855;Alias=BI_GS_DEL1_B2_P1766_196_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623867;Start_range=78255575,78255575;End_range=78261021,78261021;submitter_variant_call_id=BI_GS_DEL1_B2_P1766_196_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    81474560    81474560    10    81502395    81502395    1578:copy_number_loss:27835    .    .    .    ID=8110849;Name=essv13869555;Alias=DUP_gs_CNV_10_81474561_81502396_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623922;submitter_variant_call_id=DUP_gs_CNV_10_81474561_81502396_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    82904659    82904659    10    82904913    82904913    1579:copy_number_loss:254    .    .    .    ID=8119802;Name=essv13873466;Alias=BI_GS_DEL1_B3_P1770_31_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3623969;Start_range=82904660,82904660;End_range=82904914,82904914;submitter_variant_call_id=BI_GS_DEL1_B3_P1770_31_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    85917627    85917627    10    85917627    85917627    1580:mobile_element_insertion:0    .    .    .    ID=8130632;Name=essv13880932;Alias=ALU_umary_ALU_8116_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624027;submitter_variant_call_id=ALU_umary_ALU_8116_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    89275801    89275801    10    89276560    89276560    1581:copy_number_loss:759    .    .    .    ID=8143958;Name=essv13885776;Alias=BI_GS_DEL1_B1_P1777_50_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624110;Start_range=89275802,89275802;End_range=89276561,89276561;submitter_variant_call_id=BI_GS_DEL1_B1_P1777_50_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    89373680    89373680    10    89373680    89373680    1582:mobile_element_insertion:0    .    .    .    ID=8145087;Name=essv13886983;Alias=ALU_umary_ALU_8136_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624112;submitter_variant_call_id=ALU_umary_ALU_8136_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    90795114    90795114    10    90800285    90800285    1583:copy_number_gain:5171    .    .    .    ID=8152206;Name=essv13890561;Alias=DUP_gs_CNV_10_90795115_90800286_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3624148;submitter_variant_call_id=DUP_gs_CNV_10_90795115_90800286_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    92215071    92215071    10    92215071    92215071    1584:mobile_element_insertion:0    .    .    .    ID=8156449;Name=essv13892580;Alias=ALU_umary_ALU_8154_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624180;submitter_variant_call_id=ALU_umary_ALU_8154_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    92227510    92227510    10    92227510    92227510    1585:mobile_element_insertion:0    .    .    .    ID=8157408;Name=essv13893431;Alias=ALU_umary_ALU_8156_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624182;submitter_variant_call_id=ALU_umary_ALU_8156_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    93633332    93633332    10    93634562    93634562    1586:copy_number_loss:1230    .    .    .    ID=8163553;Name=essv13895874;Alias=BI_GS_DEL1_B1_P1781_567_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624211;Start_range=93633333,93633333;End_range=93634563,93634563;submitter_variant_call_id=BI_GS_DEL1_B1_P1781_567_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    94134431    94134431    10    94137765    94137765    1587:copy_number_loss:3334    .    .    .    ID=8166732;Name=essv13898276;Alias=YL_CN_ACB_2804_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624222;Start_range=94133432,94134932;End_range=94137266,94138766;submitter_variant_call_id=YL_CN_ACB_2804_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    94571332    94571332    10    94571332    94571332    1588:mobile_element_insertion:0    .    .    .    ID=8168755;Name=essv13899169;Alias=ALU_umary_ALU_8168_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624228;submitter_variant_call_id=ALU_umary_ALU_8168_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    95545480    95545480    10    95546491    95546491    1589:copy_number_loss:1011    .    .    .    ID=8173585;Name=essv13901233;Alias=UW_VH_1955_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624243;Start_range=95544937,95545481;End_range=95546492,95546917;submitter_variant_call_id=UW_VH_1955_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    97668537    97668537    10    97668537    97668537    1590:mobile_element_insertion:0    .    .    .    ID=8181881;Name=essv13905345;Alias=ALU_umary_ALU_8182_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624286;submitter_variant_call_id=ALU_umary_ALU_8182_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    99034740    99034740    10    99037237    99037237    1591:copy_number_loss:2497    .    .    .    ID=8186283;Name=essv13907426;Alias=SI_BD_10860_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624311;Start_range=99034521,99034868;End_range=99037188,99037458;submitter_variant_call_id=SI_BD_10860_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    99417568    99417568    10    99417568    99417568    1592:indel:0    .    .    .    ID=8188358;Name=essv13908642;Alias=PHASE3_V1_SV_1264_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624318;submitter_variant_call_id=PHASE3_V1_SV_1264_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    100025124    100025124    10    100025463    100025463    1593:copy_number_loss:339    .    .    .    ID=8189897;Name=essv13909878;Alias=BI_GS_DEL1_B5_P1788_39_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624332;Start_range=100025125,100025125;End_range=100025464,100025464;submitter_variant_call_id=BI_GS_DEL1_B5_P1788_39_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    100688638    100688638    10    100702030    100702030    1594:copy_number_loss:13392    .    .    .    ID=8192614;Name=essv13911911;Alias=BI_GS_CNV_10_100688639_100702031_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624344;Start_range=100688139,100688639;End_range=100702031,100702531;submitter_variant_call_id=BI_GS_CNV_10_100688639_100702031_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    103255611    103255611    10    103255611    103255611    1595:mobile_element_insertion:0    .    .    .    ID=8194968;Name=essv13913237;Alias=SVA_umary_SVA_467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624381;submitter_variant_call_id=SVA_umary_SVA_467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    104808360    104808360    10    104808360    104808360    1596:mobile_element_insertion:0    .    .    .    ID=8199898;Name=essv13913923;Alias=ALU_umary_ALU_8201_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624405;submitter_variant_call_id=ALU_umary_ALU_8201_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    105053206    105053206    10    105054214    105054214    1597:copy_number_loss:1008    .    .    .    ID=8200417;Name=essv13914429;Alias=UW_VH_6806_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624409;Start_range=105052651,105053207;End_range=105054215,105054659;submitter_variant_call_id=UW_VH_6806_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    105817213    105817213    10    105817213    105817213    1598:mobile_element_insertion:0    .    .    .    ID=8205882;Name=essv13916660;Alias=ALU_umary_ALU_8203_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624425;submitter_variant_call_id=ALU_umary_ALU_8203_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    107252996    107252996    10    107253347    107253347    1599:copy_number_loss:351    .    .    .    ID=8219079;Name=essv13920796;Alias=BI_GS_DEL1_B3_P1795_12_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624447;Start_range=107252997,107252997;End_range=107253348,107253348;submitter_variant_call_id=BI_GS_DEL1_B3_P1795_12_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    107891560    107891560    10    107891560    107891560    1600:mobile_element_insertion:0    .    .    .    ID=8224206;Name=essv13923317;Alias=ALU_umary_ALU_8215_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624458;submitter_variant_call_id=ALU_umary_ALU_8215_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    107950651    107950651    10    107951599    107951599    1601:copy_number_loss:948    .    .    .    ID=8226415;Name=essv13925400;Alias=UW_VH_863_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624462;Start_range=107950184,107950652;End_range=107951600,107952192;submitter_variant_call_id=UW_VH_863_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    108030303    108030303    10    108032574    108032574    1602:copy_number_loss:2271    .    .    .    ID=8228235;Name=essv13927285;Alias=SI_BD_10899_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624465;Start_range=108030018,108030434;End_range=108032422,108032861;submitter_variant_call_id=SI_BD_10899_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    108991283    108991283    10    108991283    108991283    1603:mobile_element_insertion:0    .    .    .    ID=8230270;Name=essv13929669;Alias=ALU_umary_ALU_8222_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624484;submitter_variant_call_id=ALU_umary_ALU_8222_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    109124155    109124155    10    109124155    109124155    1604:indel:0    .    .    .    ID=8231725;Name=essv13932032;Alias=PHASE3_V1_SV_1270_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624486;submitter_variant_call_id=PHASE3_V1_SV_1270_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    114073873    114073873    10    114073873    114073873    1605:mobile_element_insertion:0    .    .    .    ID=8246921;Name=essv13937310;Alias=ALU_umary_ALU_8239_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624579;submitter_variant_call_id=ALU_umary_ALU_8239_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    114112178    114112178    10    114116658    114116658    1606:copy_number_loss:4480    .    .    .    ID=8248500;Name=essv13938987;Alias=BI_GS_DEL1_B2_P1802_90_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624582;Start_range=114112179,114112179;End_range=114116659,114116659;submitter_variant_call_id=BI_GS_DEL1_B2_P1802_90_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    117006341    117006341    10    117006341    117006341    1607:mobile_element_insertion:0    .    .    .    ID=8256801;Name=essv13942902;Alias=ALU_umary_ALU_8258_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624633;submitter_variant_call_id=ALU_umary_ALU_8258_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    117703765    117703765    10    117703765    117703765    1608:mobile_element_insertion:0    .    .    .    ID=8258839;Name=essv13943940;Alias=ALU_umary_ALU_8264_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624646;submitter_variant_call_id=ALU_umary_ALU_8264_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    117711612    117711612    10    117711998    117711998    1609:copy_number_loss:386    .    .    .    ID=8260322;Name=essv13945288;Alias=BI_GS_DEL1_B5_P1805_734_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624647;Start_range=117711613,117711613;End_range=117711999,117711999;submitter_variant_call_id=BI_GS_DEL1_B5_P1805_734_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    122226690    122226690    10    122228856    122228856    1610:copy_number_loss:2166    .    .    .    ID=8272609;Name=essv13950110;Alias=SI_BD_10957_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624729;Start_range=122226360,122226741;End_range=122228756,122229188;submitter_variant_call_id=SI_BD_10957_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    122701142    122701142    10    122701436    122701436    1611:copy_number_loss:294    .    .    .    ID=8278230;Name=essv13952206;Alias=BI_GS_DEL1_B5_P1810_938_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624743;Start_range=122701143,122701143;End_range=122701437,122701437;submitter_variant_call_id=BI_GS_DEL1_B5_P1810_938_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    124455230    124455230    10    124455230    124455230    1612:mobile_element_insertion:0    .    .    .    ID=8288718;Name=essv13957203;Alias=L1_umary_LINE1_2033_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624783;submitter_variant_call_id=L1_umary_LINE1_2033_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    124736003    124736003    10    124736003    124736003    1613:mobile_element_insertion:0    .    .    .    ID=8291491;Name=essv13959497;Alias=ALU_umary_ALU_8297_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624791;submitter_variant_call_id=ALU_umary_ALU_8297_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    125664376    125664376    10    125664376    125664376    1614:indel:0    .    .    .    ID=8296076;Name=essv13962580;Alias=PHASE3_V1_SV_1277_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624802;submitter_variant_call_id=PHASE3_V1_SV_1277_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    128616068    128616068    10    128616068    128616068    1615:mobile_element_insertion:0    .    .    .    ID=8306984;Name=essv13967477;Alias=ALU_umary_ALU_8306_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3624867;submitter_variant_call_id=ALU_umary_ALU_8306_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
10    132635395    132635395    10    132638413    132638413    1616:copy_number_loss:3018    .    .    .    ID=8327922;Name=essv13975779;Alias=BI_GS_CNV_10_132635396_132638414_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624943;Start_range=132634896,132635396;End_range=132638414,132638914;submitter_variant_call_id=BI_GS_CNV_10_132635396_132638414_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    132909081    132909081    10    132912780    132912780    1617:copy_number_loss:3699    .    .    .    ID=8328948;Name=essv13976595;Alias=DUP_gs_CNV_10_132909082_132912781_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624951;submitter_variant_call_id=DUP_gs_CNV_10_132909082_132912781_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    132988696    132988696    10    132991195    132991195    1618:copy_number_loss:2499    .    .    .    ID=8329848;Name=essv13977307;Alias=BI_GS_DEL1_B5_P1820_1173_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3624953;Start_range=132988697,132988697;End_range=132991196,132991196;submitter_variant_call_id=BI_GS_DEL1_B5_P1820_1173_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    133310699    133310699    10    133310699    133310699    1619:indel:0    .    .    .    ID=8331816;Name=essv13979083;Alias=PHASE3_V1_SV_1286_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624961;submitter_variant_call_id=PHASE3_V1_SV_1286_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    133572775    133572775    10    133572775    133572775    1620:indel:0    .    .    .    ID=8334345;Name=essv13981022;Alias=PHASE3_V1_SV_1287_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624974;submitter_variant_call_id=PHASE3_V1_SV_1287_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    133954073    133954073    10    133954073    133954073    1621:indel:0    .    .    .    ID=8338903;Name=essv13982251;Alias=PHASE3_V1_SV_1288_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3624983;submitter_variant_call_id=PHASE3_V1_SV_1288_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    134865269    134865269    10    134865269    134865269    1622:indel:0    .    .    .    ID=8340983;Name=essv13984225;Alias=PHASE3_V1_SV_1295_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625024;submitter_variant_call_id=PHASE3_V1_SV_1295_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
10    135502721    135502721    10    135502721    135502721    1623:indel:0    .    .    .    ID=8342655;Name=essv13986865;Alias=PHASE3_V1_SV_1297_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625059;submitter_variant_call_id=PHASE3_V1_SV_1297_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    428026    428026    11    428026    428026    1624:mobile_element_insertion:0    .    .    .    ID=8347542;Name=essv13989183;Alias=ALU_umary_ALU_8333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625067;submitter_variant_call_id=ALU_umary_ALU_8333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    677312    677312    11    677768    677768    1625:copy_number_loss:456    .    .    .    ID=8350444;Name=essv13991494;Alias=BI_GS_DEL1_B5_P1824_334_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625075;Start_range=677313,677313;End_range=677769,677769;submitter_variant_call_id=BI_GS_DEL1_B5_P1824_334_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    3267808    3267808    11    3267808    3267808    1626:mobile_element_insertion:0    .    .    .    ID=8359864;Name=essv13995357;Alias=ALU_umary_ALU_8337_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625138;submitter_variant_call_id=ALU_umary_ALU_8337_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4248264    4248264    11    4353228    4353228    1627:copy_number_loss:104964    .    .    .    ID=8364585;Name=essv13997186;Alias=YL_CN_BEB_2150_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625166;Start_range=4247265,4248765;End_range=4352729,4354229;submitter_variant_call_id=YL_CN_BEB_2150_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4255505    4255505    11    4278146    4278146    1628:copy_number_loss:22641    .    .    .    ID=8365072;Name=essv13997501;Alias=DUP_gs_CNV_11_4255506_4278147_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625167;submitter_variant_call_id=DUP_gs_CNV_11_4255506_4278147_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4264091    4264091    11    4309729    4309729    1629:copy_number_loss:45638    .    .    .    ID=8365637;Name=essv13997969;Alias=YL_CN_GWD_3492_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625170;Start_range=4263092,4264592;End_range=4309230,4310730;submitter_variant_call_id=YL_CN_GWD_3492_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4272148    4272148    11    4327510    4327510    1630:copy_number_loss:55362    .    .    .    ID=8365769;Name=essv13998194;Alias=BI_GS_DEL1_B4_P1828_52_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625171;Start_range=4272146,4272152;End_range=4327508,4327514;submitter_variant_call_id=BI_GS_DEL1_B4_P1828_52_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4907962    4907962    11    4907962    4907962    1631:mobile_element_insertion:0    .    .    .    ID=8368846;Name=essv13999829;Alias=ALU_umary_ALU_8343_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625196;submitter_variant_call_id=ALU_umary_ALU_8343_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4968455    4968455    11    4975834    4975834    1632:copy_number_loss:7379    .    .    .    ID=8373247;Name=essv14001020;Alias=DUP_gs_CNV_11_4968456_4975835_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625200;submitter_variant_call_id=DUP_gs_CNV_11_4968456_4975835_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    4972925    4972925    11    4973836    4973836    1633:copy_number_loss:911    .    .    .    ID=8374654;Name=essv14002478;Alias=EM_DL_DEL10154711_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625202;Start_range=4972776,4973076;End_range=4973687,4973987;submitter_variant_call_id=EM_DL_DEL10154711_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    5760085    5760085    11    5762365    5762365    1634:copy_number_loss:2280    .    .    .    ID=8380585;Name=essv14005614;Alias=BI_GS_DEL1_B1_P1829_635_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625248;Start_range=5760086,5760086;End_range=5762366,5762366;submitter_variant_call_id=BI_GS_DEL1_B1_P1829_635_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    5885148    5885148    11    5885148    5885148    1635:mobile_element_insertion:0    .    .    .    ID=8387114;Name=essv14008574;Alias=ALU_umary_ALU_8351_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625256;submitter_variant_call_id=ALU_umary_ALU_8351_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    6881401    6881401    11    6881921    6881921    1636:copy_number_loss:520    .    .    .    ID=8391064;Name=essv14010468;Alias=BI_GS_DEL1_B1_P1830_837_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625273;Start_range=6881402,6881402;End_range=6881922,6881922;submitter_variant_call_id=BI_GS_DEL1_B1_P1830_837_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    7352461    7352461    11    7352461    7352461    1637:mobile_element_insertion:0    .    .    .    ID=8397947;Name=essv14013968;Alias=ALU_umary_ALU_8361_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625288;submitter_variant_call_id=ALU_umary_ALU_8361_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    7612696    7612696    11    7612696    7612696    1638:mobile_element_insertion:0    .    .    .    ID=8400498;Name=essv14015225;Alias=ALU_umary_ALU_8363_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625295;submitter_variant_call_id=ALU_umary_ALU_8363_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    7790354    7790354    11    7791993    7791993    1639:copy_number_loss:1639    .    .    .    ID=8403697;Name=essv14016842;Alias=UW_VH_10823_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625300;Start_range=7789869,7790355;End_range=7791994,7792363;submitter_variant_call_id=UW_VH_10823_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    8839662    8839662    11    8839662    8839662    1640:mobile_element_insertion:0    .    .    .    ID=8407845;Name=essv14019209;Alias=SVA_umary_SVA_486_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625319;submitter_variant_call_id=SVA_umary_SVA_486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    9525771    9525771    11    9526789    9526789    1641:copy_number_loss:1018    .    .    .    ID=8419408;Name=essv14024678;Alias=BI_GS_DEL1_B1_P1833_389_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625336;Start_range=9525772,9525772;End_range=9526790,9526790;submitter_variant_call_id=BI_GS_DEL1_B1_P1833_389_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    10260035    10260035    11    10261328    10261328    1642:copy_number_loss:1293    .    .    .    ID=8422484;Name=essv14026343;Alias=UW_VH_2100_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625350;Start_range=10259660,10260036;End_range=10261329,10261685;submitter_variant_call_id=UW_VH_2100_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    10292737    10292737    11    10293841    10293841    1643:copy_number_loss:1104    .    .    .    ID=8424731;Name=essv14027589;Alias=BI_GS_DEL1_B3_P1834_13_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625353;Start_range=10292738,10292738;End_range=10293842,10293842;submitter_variant_call_id=BI_GS_DEL1_B3_P1834_13_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    11875572    11875572    11    11876538    11876538    1644:copy_number_loss:966    .    .    .    ID=8432325;Name=essv14031189;Alias=BI_GS_DEL1_B4_P1835_228_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625382;Start_range=11875573,11875574;End_range=11876539,11876540;submitter_variant_call_id=BI_GS_DEL1_B4_P1835_228_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    13813033    13813033    11    13813033    13813033    1645:mobile_element_insertion:0    .    .    .    ID=8436399;Name=essv14033153;Alias=ALU_umary_ALU_8390_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625414;submitter_variant_call_id=ALU_umary_ALU_8390_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    14500026    14500026    11    14500026    14500026    1646:mobile_element_insertion:0    .    .    .    ID=8437516;Name=essv14033936;Alias=ALU_umary_ALU_8392_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625422;submitter_variant_call_id=ALU_umary_ALU_8392_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    16905547    16905547    11    16905547    16905547    1647:indel:0    .    .    .    ID=8443936;Name=essv14036981;Alias=PHASE3_V1_SV_1308_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625458;submitter_variant_call_id=PHASE3_V1_SV_1308_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    16996172    16996172    11    16996598    16996598    1648:copy_number_loss:426    .    .    .    ID=8448562;Name=essv14038997;Alias=BI_GS_DEL1_B2_P1840_657_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625463;Start_range=16996173,16996173;End_range=16996599,16996599;submitter_variant_call_id=BI_GS_DEL1_B2_P1840_657_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    18290363    18290363    11    18290363    18290363    1649:indel:0    .    .    .    ID=8454502;Name=essv14042425;Alias=PHASE3_V1_SV_1312_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625494;submitter_variant_call_id=PHASE3_V1_SV_1312_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    22010475    22010475    11    22010475    22010475    1650:indel:0    .    .    .    ID=8469313;Name=essv14049274;Alias=PHASE3_V1_SV_1317_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625604;submitter_variant_call_id=PHASE3_V1_SV_1317_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    22470784    22470784    11    22472849    22472849    1651:copy_number_loss:2065    .    .    .    ID=8471539;Name=essv14050660;Alias=BI_GS_DEL1_B3_P1846_24_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625618;Start_range=22470766,22470805;End_range=22472831,22472870;submitter_variant_call_id=BI_GS_DEL1_B3_P1846_24_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    23113312    23113312    11    23113312    23113312    1652:indel:0    .    .    .    ID=8475861;Name=essv14052463;Alias=PHASE3_V1_SV_1318_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625632;submitter_variant_call_id=PHASE3_V1_SV_1318_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    23358516    23358516    11    23358516    23358516    1653:mobile_element_insertion:0    .    .    .    ID=8480726;Name=essv14055036;Alias=ALU_umary_ALU_8439_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625641;submitter_variant_call_id=ALU_umary_ALU_8439_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    23522803    23522803    11    23522803    23522803    1654:mobile_element_insertion:0    .    .    .    ID=8484478;Name=essv14056863;Alias=ALU_umary_ALU_8440_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625645;submitter_variant_call_id=ALU_umary_ALU_8440_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    24792958    24792958    11    24792958    24792958    1655:mobile_element_insertion:0    .    .    .    ID=8493575;Name=essv14061373;Alias=ALU_umary_ALU_8450_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625682;submitter_variant_call_id=ALU_umary_ALU_8450_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    25605137    25605137    11    25605137    25605137    1656:mobile_element_insertion:0    .    .    .    ID=8500667;Name=essv14064927;Alias=ALU_umary_ALU_8456_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625714;submitter_variant_call_id=ALU_umary_ALU_8456_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    25653709    25653709    11    25653709    25653709    1657:mobile_element_insertion:0    .    .    .    ID=8502282;Name=essv14065841;Alias=ALU_umary_ALU_8457_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625719;submitter_variant_call_id=ALU_umary_ALU_8457_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    26293272    26293272    11    26293272    26293272    1658:mobile_element_insertion:0    .    .    .    ID=8507859;Name=essv14068688;Alias=ALU_umary_ALU_8467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625747;submitter_variant_call_id=ALU_umary_ALU_8467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    26601648    26601648    11    26601648    26601648    1659:mobile_element_insertion:0    .    .    .    ID=8510439;Name=essv14069824;Alias=ALU_umary_ALU_8468_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625752;submitter_variant_call_id=ALU_umary_ALU_8468_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    27039981    27039981    11    27039981    27039981    1660:mobile_element_insertion:0    .    .    .    ID=8513525;Name=essv14071558;Alias=ALU_umary_ALU_8472_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625762;submitter_variant_call_id=ALU_umary_ALU_8472_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    27657261    27657261    11    27657595    27657595    1661:copy_number_loss:334    .    .    .    ID=8516801;Name=essv14072860;Alias=BI_GS_DEL1_B4_P1851_138_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625773;Start_range=27657262,27657262;End_range=27657596,27657596;submitter_variant_call_id=BI_GS_DEL1_B4_P1851_138_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    29007142    29007142    11    29012765    29012765    1662:copy_number_loss:5623    .    .    .    ID=8521022;Name=essv14074729;Alias=UW_VH_21255_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625787;Start_range=29006840,29007143;End_range=29012766,29013153;submitter_variant_call_id=UW_VH_21255_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    29139369    29139369    11    29140326    29140326    1663:copy_number_loss:957    .    .    .    ID=8522796;Name=essv14076234;Alias=EM_DL_DEL10165565_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625790;Start_range=29139220,29139520;End_range=29140177,29140477;submitter_variant_call_id=EM_DL_DEL10165565_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    29715873    29715873    11    29715873    29715873    1664:indel:0    .    .    .    ID=8524321;Name=essv14076865;Alias=PHASE3_V1_SV_1325_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3625805;submitter_variant_call_id=PHASE3_V1_SV_1325_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    29967581    29967581    11    29968469    29968469    1665:copy_number_loss:888    .    .    .    ID=8526829;Name=essv14077903;Alias=BI_GS_DEL1_B5_P1853_1126_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625809;Start_range=29967582,29967582;End_range=29968470,29968470;submitter_variant_call_id=BI_GS_DEL1_B5_P1853_1126_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    31393767    31393767    11    31397649    31397649    1666:copy_number_loss:3882    .    .    .    ID=8529048;Name=essv14079282;Alias=UW_VH_889_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625827;Start_range=31393385,31393768;End_range=31397650,31398137;submitter_variant_call_id=UW_VH_889_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    33624792    33624792    11    33624792    33624792    1667:mobile_element_insertion:0    .    .    .    ID=8542867;Name=essv14085945;Alias=ALU_umary_ALU_8496_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625891;submitter_variant_call_id=ALU_umary_ALU_8496_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    33670137    33670137    11    33670137    33670137    1668:mobile_element_insertion:0    .    .    .    ID=8545896;Name=essv14087496;Alias=L1_umary_LINE1_2087_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625892;submitter_variant_call_id=L1_umary_LINE1_2087_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    33675483    33675483    11    33675483    33675483    1669:mobile_element_insertion:0    .    .    .    ID=8547299;Name=essv14088295;Alias=ALU_umary_ALU_8497_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625893;submitter_variant_call_id=ALU_umary_ALU_8497_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    34728118    34728118    11    34728612    34728612    1670:copy_number_loss:494    .    .    .    ID=8550707;Name=essv14089853;Alias=BI_GS_DEL1_B5_P1858_904_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3625914;Start_range=34728119,34728119;End_range=34728613,34728613;submitter_variant_call_id=BI_GS_DEL1_B5_P1858_904_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    37706294    37706294    11    37706294    37706294    1671:mobile_element_insertion:0    .    .    .    ID=8560126;Name=essv14094225;Alias=ALU_umary_ALU_8520_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3625986;submitter_variant_call_id=ALU_umary_ALU_8520_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    38801074    38801074    11    38801074    38801074    1672:mobile_element_insertion:0    .    .    .    ID=8564482;Name=essv14096873;Alias=ALU_umary_ALU_8526_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626018;submitter_variant_call_id=ALU_umary_ALU_8526_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    39186996    39186996    11    39186996    39186996    1673:indel:0    .    .    .    ID=8571954;Name=essv14099877;Alias=PHASE3_V1_SV_1333_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626031;submitter_variant_call_id=PHASE3_V1_SV_1333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    39785905    39785905    11    39785905    39785905    1674:indel:0    .    .    .    ID=8576573;Name=essv14102399;Alias=PHASE3_V1_SV_1334_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626049;submitter_variant_call_id=PHASE3_V1_SV_1334_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    40494017    40494017    11    40494017    40494017    1675:mobile_element_insertion:0    .    .    .    ID=8579104;Name=essv14104073;Alias=ALU_umary_ALU_8539_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626065;submitter_variant_call_id=ALU_umary_ALU_8539_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    41818198    41818198    11    41819024    41819024    1676:copy_number_loss:826    .    .    .    ID=8587610;Name=essv14107215;Alias=BI_GS_DEL1_B1_P1865_721_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626094;Start_range=41818199,41818199;End_range=41819025,41819025;submitter_variant_call_id=BI_GS_DEL1_B1_P1865_721_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    41831809    41831809    11    41831809    41831809    1677:mobile_element_insertion:0    .    .    .    ID=8588279;Name=essv14108783;Alias=L1_umary_LINE1_2104_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626097;submitter_variant_call_id=L1_umary_LINE1_2104_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    43191342    43191342    11    43191342    43191342    1678:mobile_element_insertion:0    .    .    .    ID=8596323;Name=essv14112764;Alias=ALU_umary_ALU_8557_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626140;submitter_variant_call_id=ALU_umary_ALU_8557_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    43356954    43356954    11    43356954    43356954    1679:mobile_element_insertion:0    .    .    .    ID=8597563;Name=essv14113163;Alias=L1_umary_LINE1_2111_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626144;submitter_variant_call_id=L1_umary_LINE1_2111_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    43909602    43909602    11    43909910    43909910    1680:copy_number_loss:308    .    .    .    ID=8603610;Name=essv14115820;Alias=BI_GS_DEL1_B5_P1867_1112_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626155;Start_range=43909603,43909603;End_range=43909911,43909911;submitter_variant_call_id=BI_GS_DEL1_B5_P1867_1112_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    45429847    45429847    11    45431614    45431614    1681:copy_number_loss:1767    .    .    .    ID=8607683;Name=essv14117931;Alias=BI_GS_DEL1_B1_P1869_437_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626174;Start_range=45429848,45429848;End_range=45431615,45431615;submitter_variant_call_id=BI_GS_DEL1_B1_P1869_437_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    47057587    47057587    11    47063699    47063699    1682:copy_number_loss:6112    .    .    .    ID=8611292;Name=essv14119793;Alias=EM_DL_DEL14776_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626195;Start_range=47057438,47057738;End_range=47063550,47063850;submitter_variant_call_id=EM_DL_DEL14776_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    48600856    48600856    11    48604285    48604285    1683:copy_number_loss:3429    .    .    .    ID=8622288;Name=essv14125100;Alias=BI_GS_DEL1_B5_P1872_669_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626247;Start_range=48600857,48600857;End_range=48604286,48604286;submitter_variant_call_id=BI_GS_DEL1_B5_P1872_669_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    48734743    48734743    11    48736962    48736962    1684:copy_number_loss:2219    .    .    .    ID=8631576;Name=essv14129645;Alias=BI_GS_DEL1_B4_P1872_149_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626258;Start_range=48734743,48734745;End_range=48736962,48736964;submitter_variant_call_id=BI_GS_DEL1_B4_P1872_149_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    48880633    48880633    11    48881843    48881843    1685:copy_number_loss:1210    .    .    .    ID=8639253;Name=essv14133476;Alias=YL_CN_ACB_2931_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626272;Start_range=48879634,48881134;End_range=48881344,48882844;submitter_variant_call_id=YL_CN_ACB_2931_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    48928942    48928942    11    48929252    48929252    1686:copy_number_loss:310    .    .    .    ID=8645272;Name=essv14135393;Alias=BI_GS_DEL1_B3_P1872_39_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626276;Start_range=48928943,48928943;End_range=48929253,48929253;submitter_variant_call_id=BI_GS_DEL1_B3_P1872_39_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    48933124    48933124    11    48933124    48933124    1687:mobile_element_insertion:0    .    .    .    ID=8647628;Name=essv14137568;Alias=ALU_umary_ALU_8570_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626278;submitter_variant_call_id=ALU_umary_ALU_8570_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    49655823    49655823    11    49655823    49655823    1688:mobile_element_insertion:0    .    .    .    ID=8654836;Name=essv14141767;Alias=ALU_umary_ALU_8574_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626309;submitter_variant_call_id=ALU_umary_ALU_8574_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    49883570    49883570    11    49883574    49883574    1689:insertion:4    .    .    .    ID=8660449;Name=essv14144203;Alias=NUMT_umich_24_A1_NA12878;variant_call_so_id=SO:0000667;parent=esv3626324;Start_range=49883571,49883576;End_range=49883570,49883575;submitter_variant_call_id=NUMT_umich_24_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    50345848    50345848    11    50404923    50404923    1690:copy_number_gain:59075    .    .    .    ID=8661180;Name=essv14144811;Alias=DUP_gs_CNV_11_50345849_50404924_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3626335;submitter_variant_call_id=DUP_gs_CNV_11_50345849_50404924_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    50640268    50640268    11    50641123    50641123    1691:copy_number_loss:855    .    .    .    ID=8664175;Name=essv14147239;Alias=BI_GS_DEL1_B4_P1874_88_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626359;Start_range=50640269,50640270;End_range=50641124,50641125;submitter_variant_call_id=BI_GS_DEL1_B4_P1874_88_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    51341173    51341173    11    51362975    51362975    1692:copy_number_loss:21802    .    .    .    ID=8669796;Name=essv14149991;Alias=BI_GS_DEL1_B5_P1875_51_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626381;Start_range=51341174,51341175;End_range=51362976,51362977;submitter_variant_call_id=BI_GS_DEL1_B5_P1875_51_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    51346695    51346695    11    51348981    51348981    1693:copy_number_loss:2286    .    .    .    ID=8670919;Name=essv14151745;Alias=YL_CN_GWD_3605_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626383;Start_range=51345696,51347196;End_range=51348482,51349982;submitter_variant_call_id=YL_CN_GWD_3605_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    51353223    51353223    11    51367674    51367674    1694:copy_number_loss:14451    .    .    .    ID=8673376;Name=essv14153386;Alias=DUP_gs_CNV_11_51353224_51367675_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626384;submitter_variant_call_id=DUP_gs_CNV_11_51353224_51367675_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    51577839    51577839    11    51581764    51581764    1695:copy_number_loss:3925    .    .    .    ID=8673914;Name=essv14154227;Alias=BI_GS_DEL1_B4_P1875_48_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626401;Start_range=51577819,51577862;End_range=51581744,51581787;submitter_variant_call_id=BI_GS_DEL1_B4_P1875_48_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    55368371    55368371    11    55426968    55426968    1696:copy_number_loss:58597    .    .    .    ID=8692547;Name=essv14161238;Alias=DUP_gs_CNV_11_55368372_55426969_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626445;submitter_variant_call_id=DUP_gs_CNV_11_55368372_55426969_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    55391324    55391324    11    55395115    55395115    1697:copy_number_loss:3791    .    .    .    ID=8693552;Name=essv14162308;Alias=UW_VH_7177_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626447;Start_range=55391013,55391325;End_range=55395116,55395394;submitter_variant_call_id=UW_VH_7177_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    55434291    55434291    11    55443934    55443934    1698:copy_number_loss:9643    .    .    .    ID=8695542;Name=essv14164037;Alias=DUP_gs_CNV_11_55434292_55443935_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626449;submitter_variant_call_id=DUP_gs_CNV_11_55434292_55443935_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    55445714    55445714    11    55457585    55457585    1699:copy_number_loss:11871    .    .    .    ID=8696565;Name=essv14165126;Alias=DUP_gs_CNV_11_55445715_55457586_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626451;submitter_variant_call_id=DUP_gs_CNV_11_55445715_55457586_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    56303362    56303362    11    56303362    56303362    1700:mobile_element_insertion:0    .    .    .    ID=8705597;Name=essv14167544;Alias=ALU_umary_ALU_8590_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626480;submitter_variant_call_id=ALU_umary_ALU_8590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    57774120    57774120    11    57774120    57774120    1701:mobile_element_insertion:0    .    .    .    ID=8710001;Name=essv14169724;Alias=ALU_umary_ALU_8595_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626513;submitter_variant_call_id=ALU_umary_ALU_8595_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    58166964    58166964    11    58168145    58168145    1702:copy_number_loss:1181    .    .    .    ID=8713105;Name=essv14170973;Alias=BI_GS_DEL1_B3_P1882_5_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626515;Start_range=58166965,58166966;End_range=58168146,58168147;submitter_variant_call_id=BI_GS_DEL1_B3_P1882_5_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    58587132    58587132    11    58587987    58587987    1703:copy_number_loss:855    .    .    .    ID=8715695;Name=essv14172344;Alias=BI_GS_DEL1_B4_P1882_125_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626522;Start_range=58587133,58587133;End_range=58587988,58587988;submitter_variant_call_id=BI_GS_DEL1_B4_P1882_125_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    58594194    58594194    11    58596026    58596026    1704:copy_number_loss:1832    .    .    .    ID=8716031;Name=essv14173418;Alias=BI_GS_DEL1_B2_P1882_468_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626523;Start_range=58594195,58594195;End_range=58596027,58596027;submitter_variant_call_id=BI_GS_DEL1_B2_P1882_468_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    61145213    61145213    11    61145213    61145213    1705:mobile_element_insertion:0    .    .    .    ID=8725454;Name=essv14177897;Alias=ALU_umary_ALU_8609_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626579;submitter_variant_call_id=ALU_umary_ALU_8609_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    61944784    61944784    11    61945081    61945081    1706:copy_number_loss:297    .    .    .    ID=8729755;Name=essv14179160;Alias=BI_GS_DEL1_B1_P1885_701_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626596;Start_range=61944785,61944785;End_range=61945082,61945082;submitter_variant_call_id=BI_GS_DEL1_B1_P1885_701_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    62551480    62551480    11    62551480    62551480    1707:indel:0    .    .    .    ID=8732070;Name=essv14181406;Alias=PHASE3_V1_SV_1342_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626614;submitter_variant_call_id=PHASE3_V1_SV_1342_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    64268439    64268439    11    64268439    64268439    1708:indel:0    .    .    .    ID=8743579;Name=essv14186584;Alias=PHASE3_V1_SV_1345_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626663;submitter_variant_call_id=PHASE3_V1_SV_1345_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    64526485    64526485    11    64526485    64526485    1709:indel:0    .    .    .    ID=8747545;Name=essv14188991;Alias=PHASE3_V1_SV_1346_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626665;submitter_variant_call_id=PHASE3_V1_SV_1346_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    65503488    65503488    11    65503488    65503488    1710:mobile_element_insertion:0    .    .    .    ID=8752802;Name=essv14190802;Alias=ALU_umary_ALU_8620_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626678;submitter_variant_call_id=ALU_umary_ALU_8620_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    65642107    65642107    11    65643519    65643519    1711:copy_number_loss:1412    .    .    .    ID=8754772;Name=essv14192738;Alias=BI_GS_DEL1_B1_P1889_466_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626683;Start_range=65642108,65642108;End_range=65643520,65643520;submitter_variant_call_id=BI_GS_DEL1_B1_P1889_466_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    66162113    66162113    11    66162113    66162113    1712:mobile_element_insertion:0    .    .    .    ID=8761118;Name=essv14195464;Alias=SVA_umary_SVA_503_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626694;submitter_variant_call_id=SVA_umary_SVA_503_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    66711478    66711478    11    66713551    66713551    1713:copy_number_loss:2073    .    .    .    ID=8764960;Name=essv14196868;Alias=YL_CN_MXL_2241_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626701;Start_range=66710479,66711979;End_range=66713052,66714552;submitter_variant_call_id=YL_CN_MXL_2241_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    67422479    67422479    11    67422479    67422479    1714:mobile_element_insertion:0    .    .    .    ID=8767948;Name=essv14198180;Alias=ALU_umary_ALU_8625_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626716;submitter_variant_call_id=ALU_umary_ALU_8625_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    67642221    67642221    11    67644906    67644906    1715:copy_number_loss:2685    .    .    .    ID=8769896;Name=essv14199951;Alias=UW_VH_1849_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626725;Start_range=67641865,67642222;End_range=67644907,67645264;submitter_variant_call_id=UW_VH_1849_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    68183088    68183088    11    68183403    68183403    1716:copy_number_loss:315    .    .    .    ID=8774276;Name=essv14201810;Alias=BI_GS_DEL1_B5_P1892_152_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626737;Start_range=68183089,68183089;End_range=68183404,68183404;submitter_variant_call_id=BI_GS_DEL1_B5_P1892_152_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    68859848    68859848    11    68859848    68859848    1717:indel:0    .    .    .    ID=8779260;Name=essv14204237;Alias=PHASE3_V1_SV_1348_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626742;submitter_variant_call_id=PHASE3_V1_SV_1348_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    69400833    69400833    11    69401398    69401398    1718:copy_number_loss:565    .    .    .    ID=8782617;Name=essv14205979;Alias=BI_GS_DEL1_B2_P1893_325_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626749;Start_range=69400834,69400834;End_range=69401399,69401399;submitter_variant_call_id=BI_GS_DEL1_B2_P1893_325_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    70849125    70849125    11    70849125    70849125    1719:indel:0    .    .    .    ID=8789103;Name=essv14209685;Alias=PHASE3_V1_SV_1350_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3626772;submitter_variant_call_id=PHASE3_V1_SV_1350_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    72320921    72320921    11    72320921    72320921    1720:mobile_element_insertion:0    .    .    .    ID=8795125;Name=essv14211756;Alias=ALU_umary_ALU_8634_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3626805;submitter_variant_call_id=ALU_umary_ALU_8634_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    81856333    81856333    11    81862980    81862980    1721:copy_number_loss:6647    .    .    .    ID=8809133;Name=essv14218375;Alias=DUP_gs_CNV_11_81856334_81862981_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626983;submitter_variant_call_id=DUP_gs_CNV_11_81856334_81862981_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    81860297    81860297    11    81861051    81861051    1722:copy_number_loss:754    .    .    .    ID=8809463;Name=essv14218650;Alias=EM_DL_DEL10186783_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3626985;Start_range=81860148,81860448;End_range=81860902,81861202;submitter_variant_call_id=EM_DL_DEL10186783_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    85542983    85542983    11    85542983    85542983    1723:mobile_element_insertion:0    .    .    .    ID=8816258;Name=essv14221666;Alias=ALU_umary_ALU_8698_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627076;submitter_variant_call_id=ALU_umary_ALU_8698_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    88379773    88379773    11    88379773    88379773    1724:mobile_element_insertion:0    .    .    .    ID=8821968;Name=essv14224550;Alias=ALU_umary_ALU_8715_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627150;submitter_variant_call_id=ALU_umary_ALU_8715_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    91746591    91746591    11    91746591    91746591    1725:mobile_element_insertion:0    .    .    .    ID=8841464;Name=essv14234003;Alias=ALU_umary_ALU_8741_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627264;submitter_variant_call_id=ALU_umary_ALU_8741_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    92608490    92608490    11    92608490    92608490    1726:mobile_element_insertion:0    .    .    .    ID=8842570;Name=essv14235684;Alias=ALU_umary_ALU_8745_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627281;submitter_variant_call_id=ALU_umary_ALU_8745_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    93679227    93679227    11    93681404    93681404    1727:copy_number_loss:2177    .    .    .    ID=8851455;Name=essv14240672;Alias=SI_BD_11632_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3627298;Start_range=93678937,93679278;End_range=93681355,93681696;submitter_variant_call_id=SI_BD_11632_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    94684368    94684368    11    94684368    94684368    1728:mobile_element_insertion:0    .    .    .    ID=8857794;Name=essv14242854;Alias=L1_umary_LINE1_2163_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627337;submitter_variant_call_id=L1_umary_LINE1_2163_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    98774701    98774701    11    98774701    98774701    1729:mobile_element_insertion:0    .    .    .    ID=8871592;Name=essv14249234;Alias=ALU_umary_ALU_8781_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627448;submitter_variant_call_id=ALU_umary_ALU_8781_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    100781392    100781392    11    100781392    100781392    1730:mobile_element_insertion:0    .    .    .    ID=8876487;Name=essv14251460;Alias=ALU_umary_ALU_8788_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627500;submitter_variant_call_id=ALU_umary_ALU_8788_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    102169771    102169771    11    102169771    102169771    1731:mobile_element_insertion:0    .    .    .    ID=8879742;Name=essv14253283;Alias=ALU_umary_ALU_8792_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627524;submitter_variant_call_id=ALU_umary_ALU_8792_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    102348325    102348325    11    102348325    102348325    1732:mobile_element_insertion:0    .    .    .    ID=8882102;Name=essv14254433;Alias=ALU_umary_ALU_8793_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627529;submitter_variant_call_id=ALU_umary_ALU_8793_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    102751101    102751101    11    102752803    102752803    1733:copy_number_loss:1702    .    .    .    ID=8885613;Name=essv14256026;Alias=UW_VH_13336_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3627538;Start_range=102750696,102751102;End_range=102752804,102753315;submitter_variant_call_id=UW_VH_13336_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    103201279    103201279    11    103201279    103201279    1734:mobile_element_insertion:0    .    .    .    ID=8888066;Name=essv14257610;Alias=ALU_umary_ALU_8801_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627552;submitter_variant_call_id=ALU_umary_ALU_8801_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    104267741    104267741    11    104273235    104273235    1735:copy_number_loss:5494    .    .    .    ID=8899223;Name=essv14263919;Alias=UW_VH_2159_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3627584;Start_range=104267267,104267742;End_range=104273236,104273784;submitter_variant_call_id=UW_VH_2159_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    104556129    104556129    11    104556129    104556129    1736:mobile_element_insertion:0    .    .    .    ID=8904546;Name=essv14265701;Alias=L1_umary_LINE1_2179_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627593;submitter_variant_call_id=L1_umary_LINE1_2179_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    104786607    104786607    11    104786607    104786607    1737:mobile_element_insertion:0    .    .    .    ID=8907717;Name=essv14267454;Alias=ALU_umary_ALU_8813_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627600;submitter_variant_call_id=ALU_umary_ALU_8813_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    105836050    105836050    11    105836050    105836050    1738:mobile_element_insertion:0    .    .    .    ID=8911656;Name=essv14269034;Alias=ALU_umary_ALU_8817_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627621;submitter_variant_call_id=ALU_umary_ALU_8817_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    106044580    106044580    11    106044580    106044580    1739:mobile_element_insertion:0    .    .    .    ID=8914008;Name=essv14270575;Alias=ALU_umary_ALU_8820_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627629;submitter_variant_call_id=ALU_umary_ALU_8820_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    106170480    106170480    11    106170480    106170480    1740:mobile_element_insertion:0    .    .    .    ID=8916045;Name=essv14272582;Alias=ALU_umary_ALU_8821_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627631;submitter_variant_call_id=ALU_umary_ALU_8821_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    107158610    107158610    11    107158610    107158610    1741:indel:0    .    .    .    ID=8923827;Name=essv14275195;Alias=PHASE3_V1_SV_1380_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627646;submitter_variant_call_id=PHASE3_V1_SV_1380_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    109056951    109056951    11    109056951    109056951    1742:indel:0    .    .    .    ID=8932873;Name=essv14279910;Alias=PHASE3_V1_SV_1381_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627697;submitter_variant_call_id=PHASE3_V1_SV_1381_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    109930919    109930919    11    109930919    109930919    1743:indel:0    .    .    .    ID=8937070;Name=essv14282209;Alias=PHASE3_V1_SV_1382_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627714;submitter_variant_call_id=PHASE3_V1_SV_1382_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    110026838    110026838    11    110026838    110026838    1744:indel:0    .    .    .    ID=8939550;Name=essv14284539;Alias=PHASE3_V1_SV_1383_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627715;submitter_variant_call_id=PHASE3_V1_SV_1383_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    110377893    110377893    11    110377893    110377893    1745:mobile_element_insertion:0    .    .    .    ID=8946212;Name=essv14286526;Alias=L1_umary_LINE1_2187_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627721;submitter_variant_call_id=L1_umary_LINE1_2187_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    114397160    114397160    11    114397160    114397160    1746:indel:0    .    .    .    ID=8951231;Name=essv14289238;Alias=PHASE3_V1_SV_1385_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627790;submitter_variant_call_id=PHASE3_V1_SV_1385_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    117500230    117500230    11    117500230    117500230    1747:indel:0    .    .    .    ID=8960097;Name=essv14292737;Alias=PHASE3_V1_SV_1388_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627858;submitter_variant_call_id=PHASE3_V1_SV_1388_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    117683505    117683505    11    117683505    117683505    1748:mobile_element_insertion:0    .    .    .    ID=8960275;Name=essv14293047;Alias=ALU_umary_ALU_8864_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627860;submitter_variant_call_id=ALU_umary_ALU_8864_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    122053567    122053567    11    122053567    122053567    1749:mobile_element_insertion:0    .    .    .    ID=8966295;Name=essv14295773;Alias=ALU_umary_ALU_8882_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3627938;submitter_variant_call_id=ALU_umary_ALU_8882_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    122707245    122707245    11    122707245    122707245    1750:indel:0    .    .    .    ID=8969280;Name=essv14298392;Alias=PHASE3_V1_SV_1392_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627948;submitter_variant_call_id=PHASE3_V1_SV_1392_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    123230019    123230019    11    123230019    123230019    1751:indel:0    .    .    .    ID=8974099;Name=essv14300260;Alias=PHASE3_V1_SV_1394_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3627954;submitter_variant_call_id=PHASE3_V1_SV_1394_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    124775003    124775003    11    124778379    124778379    1752:copy_number_loss:3376    .    .    .    ID=8979611;Name=essv14302551;Alias=UW_VH_2613_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3627990;Start_range=124774625,124775004;End_range=124778380,124778717;submitter_variant_call_id=UW_VH_2613_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    126941132    126941132    11    126941132    126941132    1753:mobile_element_insertion:0    .    .    .    ID=8982787;Name=essv14304722;Alias=ALU_umary_ALU_8900_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628014;submitter_variant_call_id=ALU_umary_ALU_8900_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    127997834    127997834    11    127997834    127997834    1754:mobile_element_insertion:0    .    .    .    ID=8989156;Name=essv14307297;Alias=ALU_umary_ALU_8906_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628040;submitter_variant_call_id=ALU_umary_ALU_8906_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    128997479    128997479    11    128997479    128997479    1755:mobile_element_insertion:0    .    .    .    ID=8993628;Name=essv14309567;Alias=ALU_umary_ALU_8911_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628058;submitter_variant_call_id=ALU_umary_ALU_8911_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    130048287    130048287    11    130048287    130048287    1756:indel:0    .    .    .    ID=8998495;Name=essv14311982;Alias=PHASE3_V1_SV_1398_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3628077;submitter_variant_call_id=PHASE3_V1_SV_1398_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    130675923    130675923    11    130675923    130675923    1757:mobile_element_insertion:0    .    .    .    ID=9001178;Name=essv14313918;Alias=ALU_umary_ALU_8918_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628092;submitter_variant_call_id=ALU_umary_ALU_8918_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    131178182    131178182    11    131178182    131178182    1758:indel:0    .    .    .    ID=9005816;Name=essv14316071;Alias=PHASE3_V1_SV_1400_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3628103;submitter_variant_call_id=PHASE3_V1_SV_1400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    133519916    133519916    11    133519916    133519916    1759:indel:0    .    .    .    ID=9012416;Name=essv14319589;Alias=PHASE3_V1_SV_1403_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3628153;submitter_variant_call_id=PHASE3_V1_SV_1403_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    134305646    134305646    11    134305646    134305646    1760:mobile_element_insertion:0    .    .    .    ID=9015841;Name=essv14321936;Alias=L1_umary_LINE1_2218_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628171;submitter_variant_call_id=L1_umary_LINE1_2218_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
11    134601919    134601919    11    134607016    134607016    1761:copy_number_loss:5097    .    .    .    ID=9021382;Name=essv14323172;Alias=DUP_gs_CNV_11_134601920_134607017_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628185;submitter_variant_call_id=DUP_gs_CNV_11_134601920_134607017_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
11    134803511    134803511    11    134805506    134805506    1762:copy_number_loss:1995    .    .    .    ID=9025046;Name=essv14326391;Alias=YL_CN_GWD_3795_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628203;Start_range=134802512,134804012;End_range=134805007,134806507;submitter_variant_call_id=YL_CN_GWD_3795_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    292171    292171    12    297978    297978    1763:copy_number_loss:5807    .    .    .    ID=9033591;Name=essv14329472;Alias=UW_VH_18821_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628227;Start_range=292054,292172;End_range=297979,298192;submitter_variant_call_id=UW_VH_18821_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    377418    377418    12    384771    384771    1764:copy_number_loss:7353    .    .    .    ID=9033608;Name=essv14329480;Alias=BI_GS_DEL1_B4_P1960_65_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628230;Start_range=377380,377459;End_range=384733,384812;submitter_variant_call_id=BI_GS_DEL1_B4_P1960_65_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    1028763    1028763    12    1029615    1029615    1765:copy_number_loss:852    .    .    .    ID=9039117;Name=essv14332016;Alias=SI_BD_11875_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628262;Start_range=1028424,1028898;End_range=1029566,1029956;submitter_variant_call_id=SI_BD_11875_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    1864003    1864003    12    1864319    1864319    1766:copy_number_loss:316    .    .    .    ID=9046610;Name=essv14335666;Alias=BI_GS_DEL1_B1_P1961_685_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628293;Start_range=1864004,1864004;End_range=1864320,1864320;submitter_variant_call_id=BI_GS_DEL1_B1_P1961_685_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    2089855    2089855    12    2089855    2089855    1767:mobile_element_insertion:0    .    .    .    ID=9048917;Name=essv14336876;Alias=ALU_umary_ALU_8951_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628299;submitter_variant_call_id=ALU_umary_ALU_8951_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    4770884    4770884    12    4770884    4770884    1768:mobile_element_insertion:0    .    .    .    ID=9061314;Name=essv14343103;Alias=ALU_umary_ALU_8958_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628364;submitter_variant_call_id=ALU_umary_ALU_8958_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    4843853    4843853    12    4843853    4843853    1769:mobile_element_insertion:0    .    .    .    ID=9062051;Name=essv14343609;Alias=ALU_umary_ALU_8960_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628366;submitter_variant_call_id=ALU_umary_ALU_8960_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    5769608    5769608    12    5769608    5769608    1770:mobile_element_insertion:0    .    .    .    ID=9065196;Name=essv14345143;Alias=ALU_umary_ALU_8965_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628390;submitter_variant_call_id=ALU_umary_ALU_8965_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    7603982    7603982    12    7603982    7603982    1771:mobile_element_insertion:0    .    .    .    ID=9070855;Name=essv14347782;Alias=ALU_umary_ALU_8978_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628425;submitter_variant_call_id=ALU_umary_ALU_8978_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    8558500    8558500    12    8568268    8568268    1772:copy_number_loss:9768    .    .    .    ID=9086543;Name=essv14353378;Alias=SI_BD_11938_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628468;Start_range=8558280,8558551;End_range=8568219,8568490;submitter_variant_call_id=SI_BD_11938_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    8558617    8558617    12    8591534    8591534    1773:copy_number_loss:32917    .    .    .    ID=9089950;Name=essv14355807;Alias=YL_CN_GWD_3813_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628469;Start_range=8557618,8559118;End_range=8591035,8592535;submitter_variant_call_id=YL_CN_GWD_3813_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    8568919    8568919    12    8587026    8587026    1774:copy_number_loss:18107    .    .    .    ID=9091494;Name=essv14358255;Alias=DUP_gs_CNV_12_8568920_8587027_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628470;submitter_variant_call_id=DUP_gs_CNV_12_8568920_8587027_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    9016852    9016852    12    9017887    9017887    1775:copy_number_loss:1035    .    .    .    ID=9097118;Name=essv14361029;Alias=SI_BD_11943_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628484;Start_range=9016535,9016903;End_range=9017838,9018206;submitter_variant_call_id=SI_BD_11943_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    9369238    9369238    12    9369238    9369238    1776:mobile_element_insertion:0    .    .    .    ID=9103303;Name=essv14362837;Alias=ALU_umary_ALU_8984_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628494;submitter_variant_call_id=ALU_umary_ALU_8984_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    9480763    9480763    12    9480763    9480763    1777:indel:0    .    .    .    ID=9105854;Name=essv14365044;Alias=PHASE3_V1_SV_2163_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3628498;submitter_variant_call_id=PHASE3_V1_SV_2163_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    9635127    9635127    12    9688880    9688880    1778:copy_number_loss:53753    .    .    .    ID=9113333;Name=essv14368000;Alias=BI_GS_CNV_12_9635128_9688881_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628506;Start_range=9634628,9635128;End_range=9688881,9689381;submitter_variant_call_id=BI_GS_CNV_12_9635128_9688881_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    9722036    9722036    12    9723010    9723010    1779:copy_number_loss:974    .    .    .    ID=9116369;Name=essv14370219;Alias=UW_VH_934_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628507;Start_range=9721487,9722037;End_range=9723011,9723513;submitter_variant_call_id=UW_VH_934_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    9871161    9871161    12    9871161    9871161    1780:mobile_element_insertion:0    .    .    .    ID=9118246;Name=essv14371613;Alias=ALU_umary_ALU_8988_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628515;submitter_variant_call_id=ALU_umary_ALU_8988_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    10234201    10234201    12    10234201    10234201    1781:mobile_element_insertion:0    .    .    .    ID=9121899;Name=essv14373342;Alias=ALU_umary_ALU_8992_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628523;submitter_variant_call_id=ALU_umary_ALU_8992_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    11222190    11222190    12    11249670    11249670    1782:copy_number_loss:27480    .    .    .    ID=9136742;Name=essv14380298;Alias=DUP_gs_CNV_12_11222191_11249671_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628561;submitter_variant_call_id=DUP_gs_CNV_12_11222191_11249671_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    11288103    11288103    12    11288103    11288103    1783:indel:0    .    .    .    ID=9138471;Name=essv14381699;Alias=PHASE3_V1_SV_1408_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3628564;submitter_variant_call_id=PHASE3_V1_SV_1408_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    11515722    11515722    12    11544431    11544431    1784:copy_number_loss:28709    .    .    .    ID=9141337;Name=essv14382509;Alias=DUP_gs_CNV_12_11515723_11544432_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628575;submitter_variant_call_id=DUP_gs_CNV_12_11515723_11544432_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    12544791    12544791    12    12546606    12546606    1785:inversion:1815    .    .    .    ID=9151863;Name=essv14387633;Alias=INV_delly_INV00021200_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3628610;Start_range=12544771,12544813;End_range=12546586,12546628;submitter_variant_call_id=INV_delly_INV00021200_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    12933702    12933702    12    12933702    12933702    1786:mobile_element_insertion:0    .    .    .    ID=9155395;Name=essv14390086;Alias=L1_umary_LINE1_2231_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628625;submitter_variant_call_id=L1_umary_LINE1_2231_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    13725911    13725911    12    13726561    13726561    1787:copy_number_loss:650    .    .    .    ID=9157757;Name=essv14391158;Alias=BI_GS_DEL1_B1_P1973_763_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628635;Start_range=13725912,13725912;End_range=13726562,13726562;submitter_variant_call_id=BI_GS_DEL1_B1_P1973_763_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    14052328    14052328    12    14052821    14052821    1788:copy_number_loss:493    .    .    .    ID=9159848;Name=essv14391602;Alias=BI_GS_DEL1_B5_P1974_79_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628638;Start_range=14052328,14052330;End_range=14052821,14052823;submitter_variant_call_id=BI_GS_DEL1_B5_P1974_79_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    14173878    14173878    12    14173878    14173878    1789:mobile_element_insertion:0    .    .    .    ID=9162117;Name=essv14392599;Alias=ALU_umary_ALU_9012_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628640;submitter_variant_call_id=ALU_umary_ALU_9012_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    15104646    15104646    12    15104646    15104646    1790:mobile_element_insertion:0    .    .    .    ID=9164899;Name=essv14394704;Alias=ALU_umary_ALU_9019_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628658;submitter_variant_call_id=ALU_umary_ALU_9019_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    16420131    16420131    12    16421287    16421287    1791:copy_number_loss:1156    .    .    .    ID=9170248;Name=essv14397375;Alias=UW_VH_25172_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628688;Start_range=16419716,16420132;End_range=16421288,16421623;submitter_variant_call_id=UW_VH_25172_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    18751603    18751603    12    18751603    18751603    1792:mobile_element_insertion:0    .    .    .    ID=9177870;Name=essv14401056;Alias=ALU_umary_ALU_9040_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628739;submitter_variant_call_id=ALU_umary_ALU_9040_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    20908684    20908684    12    20908684    20908684    1793:mobile_element_insertion:0    .    .    .    ID=9186431;Name=essv14405216;Alias=ALU_umary_ALU_9054_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628790;submitter_variant_call_id=ALU_umary_ALU_9054_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    22085954    22085954    12    22085954    22085954    1794:mobile_element_insertion:0    .    .    .    ID=9192210;Name=essv14407176;Alias=ALU_umary_ALU_9062_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628816;submitter_variant_call_id=ALU_umary_ALU_9062_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    22123795    22123795    12    22123795    22123795    1795:mobile_element_insertion:0    .    .    .    ID=9194813;Name=essv14409025;Alias=ALU_umary_ALU_9064_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628821;submitter_variant_call_id=ALU_umary_ALU_9064_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    23939445    23939445    12    23940211    23940211    1796:copy_number_loss:766    .    .    .    ID=9197331;Name=essv14410691;Alias=BI_GS_DEL1_B2_P1983_661_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628853;Start_range=23939416,23939476;End_range=23940182,23940242;submitter_variant_call_id=BI_GS_DEL1_B2_P1983_661_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    24451730    24451730    12    24451730    24451730    1797:mobile_element_insertion:0    .    .    .    ID=9201502;Name=essv14411278;Alias=ALU_umary_ALU_9073_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628864;submitter_variant_call_id=ALU_umary_ALU_9073_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    24460411    24460411    12    24460700    24460700    1798:copy_number_loss:289    .    .    .    ID=9202449;Name=essv14412898;Alias=BI_GS_DEL1_B5_P1984_559_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3628866;Start_range=24460412,24460412;End_range=24460701,24460701;submitter_variant_call_id=BI_GS_DEL1_B5_P1984_559_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    25462948    25462948    12    25462948    25462948    1799:mobile_element_insertion:0    .    .    .    ID=9207507;Name=essv14415708;Alias=ALU_umary_ALU_9083_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628894;submitter_variant_call_id=ALU_umary_ALU_9083_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    26697611    26697611    12    26697611    26697611    1800:mobile_element_insertion:0    .    .    .    ID=9209919;Name=essv14416972;Alias=ALU_umary_ALU_9091_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628920;submitter_variant_call_id=ALU_umary_ALU_9091_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    27864810    27864810    12    27864810    27864810    1801:mobile_element_insertion:0    .    .    .    ID=9213888;Name=essv14418924;Alias=ALU_umary_ALU_9100_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628945;submitter_variant_call_id=ALU_umary_ALU_9100_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    28274590    28274590    12    28274590    28274590    1802:mobile_element_insertion:0    .    .    .    ID=9217871;Name=essv14420492;Alias=ALU_umary_ALU_9105_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3628960;submitter_variant_call_id=ALU_umary_ALU_9105_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    30371299    30371299    12    30371727    30371727    1803:copy_number_loss:428    .    .    .    ID=9231332;Name=essv14425900;Alias=BI_GS_DEL1_B1_P1990_361_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629005;Start_range=30371300,30371300;End_range=30371728,30371728;submitter_variant_call_id=BI_GS_DEL1_B1_P1990_361_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    30420656    30420656    12    30420656    30420656    1804:mobile_element_insertion:0    .    .    .    ID=9233514;Name=essv14427290;Alias=ALU_umary_ALU_9119_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629009;submitter_variant_call_id=ALU_umary_ALU_9119_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    31120729    31120729    12    31120729    31120729    1805:mobile_element_insertion:0    .    .    .    ID=9241069;Name=essv14432190;Alias=ALU_umary_ALU_9123_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629030;submitter_variant_call_id=ALU_umary_ALU_9123_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    31406648    31406648    12    31406648    31406648    1806:mobile_element_insertion:0    .    .    .    ID=9244093;Name=essv14433697;Alias=ALU_umary_ALU_9125_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629039;submitter_variant_call_id=ALU_umary_ALU_9125_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    32076426    32076426    12    32076426    32076426    1807:mobile_element_insertion:0    .    .    .    ID=9248879;Name=essv14436476;Alias=ALU_umary_ALU_9129_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629061;submitter_variant_call_id=ALU_umary_ALU_9129_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    34845066    34845066    12    34849182    34849182    1808:copy_number_loss:4116    .    .    .    ID=9268135;Name=essv14445883;Alias=BI_GS_DEL1_B1_P1994_431_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629175;Start_range=34845036,34845098;End_range=34849152,34849214;submitter_variant_call_id=BI_GS_DEL1_B1_P1994_431_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    37991226    37991226    12    37994636    37994636    1809:copy_number_loss:3410    .    .    .    ID=9272242;Name=essv14446798;Alias=BI_GS_DEL1_B4_P1997_17_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629182;Start_range=37991217,37991237;End_range=37994627,37994647;submitter_variant_call_id=BI_GS_DEL1_B4_P1997_17_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    38009952    38009952    12    38018210    38018210    1810:copy_number_loss:8258    .    .    .    ID=9273037;Name=essv14447515;Alias=YL_CN_CHB_2813_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629184;Start_range=38008953,38010453;End_range=38017711,38019211;submitter_variant_call_id=YL_CN_CHB_2813_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    38084721    38084721    12    38086523    38086523    1811:copy_number_loss:1802    .    .    .    ID=9274020;Name=essv14448424;Alias=YL_CN_CEU_3494_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629195;Start_range=38083722,38085222;End_range=38086024,38087524;submitter_variant_call_id=YL_CN_CEU_3494_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    39378254    39378254    12    39378254    39378254    1812:mobile_element_insertion:0    .    .    .    ID=9276871;Name=essv14449994;Alias=ALU_umary_ALU_9150_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629246;submitter_variant_call_id=ALU_umary_ALU_9150_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    41183192    41183192    12    41183502    41183502    1813:copy_number_loss:310    .    .    .    ID=9287998;Name=essv14455710;Alias=UW_VH_951_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629301;Start_range=41182656,41183193;End_range=41183503,41183962;submitter_variant_call_id=UW_VH_951_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    43256993    43256993    12    43256993    43256993    1814:mobile_element_insertion:0    .    .    .    ID=9300542;Name=essv14461816;Alias=L1_umary_LINE1_2278_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629337;submitter_variant_call_id=L1_umary_LINE1_2278_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    43717939    43717939    12    43717939    43717939    1815:mobile_element_insertion:0    .    .    .    ID=9304784;Name=essv14463957;Alias=ALU_umary_ALU_9177_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629345;submitter_variant_call_id=ALU_umary_ALU_9177_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    44313664    44313664    12    44313664    44313664    1816:mobile_element_insertion:0    .    .    .    ID=9308137;Name=essv14465316;Alias=SVA_umary_SVA_540_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629357;submitter_variant_call_id=SVA_umary_SVA_540_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    45419554    45419554    12    45419554    45419554    1817:mobile_element_insertion:0    .    .    .    ID=9314556;Name=essv14468914;Alias=ALU_umary_ALU_9188_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629379;submitter_variant_call_id=ALU_umary_ALU_9188_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    45903206    45903206    12    45909946    45909946    1818:copy_number_loss:6740    .    .    .    ID=9320685;Name=essv14470447;Alias=UW_VH_955_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629387;Start_range=45902717,45903207;End_range=45909947,45910464;submitter_variant_call_id=UW_VH_955_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    46046308    46046308    12    46046308    46046308    1819:mobile_element_insertion:0    .    .    .    ID=9321831;Name=essv14471162;Alias=ALU_umary_ALU_9192_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629390;submitter_variant_call_id=ALU_umary_ALU_9192_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    46175165    46175165    12    46175165    46175165    1820:mobile_element_insertion:0    .    .    .    ID=9324005;Name=essv14472981;Alias=ALU_umary_ALU_9193_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629392;submitter_variant_call_id=ALU_umary_ALU_9193_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    46648124    46648124    12    46648124    46648124    1821:mobile_element_insertion:0    .    .    .    ID=9325672;Name=essv14474097;Alias=ALU_umary_ALU_9196_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629400;submitter_variant_call_id=ALU_umary_ALU_9196_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    48312489    48312489    12    48312489    48312489    1822:mobile_element_insertion:0    .    .    .    ID=9327715;Name=essv14475336;Alias=ALU_umary_ALU_9207_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629427;submitter_variant_call_id=ALU_umary_ALU_9207_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    48708486    48708486    12    48711017    48711017    1823:copy_number_loss:2531    .    .    .    ID=9329498;Name=essv14476061;Alias=YL_CN_FIN_2635_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629434;Start_range=48707487,48708987;End_range=48710518,48712018;submitter_variant_call_id=YL_CN_FIN_2635_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    51216447    51216447    12    51218461    51218461    1824:copy_number_loss:2014    .    .    .    ID=9337163;Name=essv14479969;Alias=UW_VH_4157_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629490;Start_range=51216182,51216448;End_range=51218462,51218780;submitter_variant_call_id=UW_VH_4157_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    51796889    51796889    12    51796889    51796889    1825:indel:0    .    .    .    ID=9338673;Name=essv14480803;Alias=PHASE3_V1_SV_1440_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3629503;submitter_variant_call_id=PHASE3_V1_SV_1440_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    55127306    55127306    12    55127306    55127306    1826:indel:0    .    .    .    ID=9347040;Name=essv14484286;Alias=PHASE3_V1_SV_1444_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3629558;submitter_variant_call_id=PHASE3_V1_SV_1444_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    58083277    58083277    12    58083277    58083277    1827:mobile_element_insertion:0    .    .    .    ID=9358085;Name=essv14488685;Alias=ALU_umary_ALU_9233_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629616;submitter_variant_call_id=ALU_umary_ALU_9233_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    58359070    58359070    12    58359070    58359070    1828:mobile_element_insertion:0    .    .    .    ID=9359934;Name=essv14490232;Alias=ALU_umary_ALU_9234_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629618;submitter_variant_call_id=ALU_umary_ALU_9234_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    58458222    58458222    12    58458222    58458222    1829:mobile_element_insertion:0    .    .    .    ID=9361740;Name=essv14491895;Alias=ALU_umary_ALU_9236_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629621;submitter_variant_call_id=ALU_umary_ALU_9236_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    59219061    59219061    12    59219061    59219061    1830:mobile_element_insertion:0    .    .    .    ID=9369974;Name=essv14495841;Alias=ALU_umary_ALU_9241_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629633;submitter_variant_call_id=ALU_umary_ALU_9241_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    61704146    61704146    12    61704146    61704146    1831:mobile_element_insertion:0    .    .    .    ID=9392424;Name=essv14506979;Alias=ALU_umary_ALU_9263_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629717;submitter_variant_call_id=ALU_umary_ALU_9263_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    62880051    62880051    12    62880051    62880051    1832:mobile_element_insertion:0    .    .    .    ID=9397636;Name=essv14509979;Alias=ALU_umary_ALU_9268_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629737;submitter_variant_call_id=ALU_umary_ALU_9268_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    64069041    64069041    12    64136499    64136499    1833:copy_number_gain:67458    .    .    .    ID=9404620;Name=essv14513719;Alias=DUP_uwash_chr12_64069042_64136500_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3629759;submitter_variant_call_id=DUP_uwash_chr12_64069042_64136500_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    67011587    67011587    12    67011587    67011587    1834:mobile_element_insertion:0    .    .    .    ID=9414405;Name=essv14518427;Alias=ALU_umary_ALU_9291_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3629810;submitter_variant_call_id=ALU_umary_ALU_9291_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    67678491    67678491    12    67678491    67678491    1835:indel:0    .    .    .    ID=9416491;Name=essv14519386;Alias=PHASE3_V1_SV_1450_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3629826;submitter_variant_call_id=PHASE3_V1_SV_1450_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    71602362    71602362    12    71604479    71604479    1836:copy_number_loss:2117    .    .    .    ID=9432782;Name=essv14527232;Alias=BI_GS_DEL1_B2_P2031_416_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629910;Start_range=71602363,71602363;End_range=71604480,71604480;submitter_variant_call_id=BI_GS_DEL1_B2_P2031_416_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    71939912    71939912    12    71941571    71941571    1837:inversion:1659    .    .    .    ID=9435807;Name=essv14528072;Alias=INV_delly_INV00023100_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3629913;Start_range=71939748,71940078;End_range=71941407,71941737;submitter_variant_call_id=INV_delly_INV00023100_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    72356516    72356516    12    72358156    72358156    1838:copy_number_loss:1640    .    .    .    ID=9442231;Name=essv14531423;Alias=YL_CN_BEB_2395_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3629922;Start_range=72355517,72357017;End_range=72357657,72359157;submitter_variant_call_id=YL_CN_BEB_2395_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    72739802    72739802    12    72739802    72739802    1839:indel:0    .    .    .    ID=9444578;Name=essv14533457;Alias=PHASE3_V1_SV_1454_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3629928;submitter_variant_call_id=PHASE3_V1_SV_1454_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    75931100    75931100    12    75931100    75931100    1840:mobile_element_insertion:0    .    .    .    ID=9456118;Name=essv14539048;Alias=ALU_umary_ALU_9345_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630015;submitter_variant_call_id=ALU_umary_ALU_9345_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    76823057    76823057    12    76823057    76823057    1841:mobile_element_insertion:0    .    .    .    ID=9458182;Name=essv14539947;Alias=ALU_umary_ALU_9348_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630029;submitter_variant_call_id=ALU_umary_ALU_9348_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    77275729    77275729    12    77275729    77275729    1842:mobile_element_insertion:0    .    .    .    ID=9458968;Name=essv14540252;Alias=ALU_umary_ALU_9350_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630036;submitter_variant_call_id=ALU_umary_ALU_9350_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    78084543    78084543    12    78084543    78084543    1843:indel:0    .    .    .    ID=9466892;Name=essv14542861;Alias=PHASE3_V1_SV_1456_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630047;submitter_variant_call_id=PHASE3_V1_SV_1456_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    80153370    80153370    12    80162647    80162647    1844:copy_number_gain:9277    .    .    .    ID=9473426;Name=essv14547024;Alias=DUP_gs_CNV_12_80153371_80162648_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3630088;submitter_variant_call_id=DUP_gs_CNV_12_80153371_80162648_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    84593114    84593114    12    84596019    84596019    1845:copy_number_loss:2905    .    .    .    ID=9488890;Name=essv14554115;Alias=BI_GS_DEL1_B1_P2044_422_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630211;Start_range=84593115,84593115;End_range=84596020,84596020;submitter_variant_call_id=BI_GS_DEL1_B1_P2044_422_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    86653627    86653627    12    86653627    86653627    1846:mobile_element_insertion:0    .    .    .    ID=9499139;Name=essv14559743;Alias=ALU_umary_ALU_9399_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630260;submitter_variant_call_id=ALU_umary_ALU_9399_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    87444048    87444048    12    87444048    87444048    1847:indel:0    .    .    .    ID=9500867;Name=essv14560908;Alias=PHASE3_V1_SV_1465_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630280;submitter_variant_call_id=PHASE3_V1_SV_1465_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    87870822    87870822    12    87870822    87870822    1848:mobile_element_insertion:0    .    .    .    ID=9503962;Name=essv14562770;Alias=ALU_umary_ALU_9405_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630288;submitter_variant_call_id=ALU_umary_ALU_9405_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    88338169    88338169    12    88338169    88338169    1849:mobile_element_insertion:0    .    .    .    ID=9508129;Name=essv14564815;Alias=ALU_umary_ALU_9409_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630298;submitter_variant_call_id=ALU_umary_ALU_9409_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    90487030    90487030    12    90491707    90491707    1850:copy_number_loss:4677    .    .    .    ID=9512807;Name=essv14566729;Alias=UW_VH_21853_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630327;Start_range=90486980,90487031;End_range=90491708,90491926;submitter_variant_call_id=UW_VH_21853_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    95244022    95244022    12    95244448    95244448    1851:copy_number_loss:426    .    .    .    ID=9526328;Name=essv14573341;Alias=BI_GS_DEL1_B3_P2055_4_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630423;Start_range=95244023,95244023;End_range=95244449,95244449;submitter_variant_call_id=BI_GS_DEL1_B3_P2055_4_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    96010453    96010453    12    96012413    96012413    1852:copy_number_loss:1960    .    .    .    ID=9532090;Name=essv14574942;Alias=BI_GS_DEL1_B1_P2056_4_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630434;Start_range=96010454,96010454;End_range=96012414,96012414;submitter_variant_call_id=BI_GS_DEL1_B1_P2056_4_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    96233489    96233489    12    96236775    96236775    1853:copy_number_loss:3286    .    .    .    ID=9533275;Name=essv14577277;Alias=YL_CN_PUR_3473_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630438;Start_range=96232490,96233990;End_range=96236276,96237776;submitter_variant_call_id=YL_CN_PUR_3473_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    97495357    97495357    12    97495357    97495357    1854:mobile_element_insertion:0    .    .    .    ID=9542475;Name=essv14580532;Alias=ALU_umary_ALU_9450_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630468;submitter_variant_call_id=ALU_umary_ALU_9450_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    97701799    97701799    12    97701799    97701799    1855:indel:0    .    .    .    ID=9545515;Name=essv14582895;Alias=PHASE3_V1_SV_1470_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630472;submitter_variant_call_id=PHASE3_V1_SV_1470_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    98669929    98669929    12    98672100    98672100    1856:copy_number_loss:2171    .    .    .    ID=9550281;Name=essv14585082;Alias=UW_VH_12527_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630503;Start_range=98669555,98669930;End_range=98672101,98672344;submitter_variant_call_id=UW_VH_12527_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    98884580    98884580    12    98884580    98884580    1857:mobile_element_insertion:0    .    .    .    ID=9550746;Name=essv14585563;Alias=ALU_umary_ALU_9458_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630508;submitter_variant_call_id=ALU_umary_ALU_9458_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    98955381    98955381    12    98959031    98959031    1858:copy_number_loss:3650    .    .    .    ID=9551041;Name=essv14585816;Alias=UW_VH_2529_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630509;Start_range=98955078,98955382;End_range=98959032,98959483;submitter_variant_call_id=UW_VH_2529_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    99781651    99781651    12    99781651    99781651    1859:mobile_element_insertion:0    .    .    .    ID=9552717;Name=essv14586331;Alias=ALU_umary_ALU_9465_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630524;submitter_variant_call_id=ALU_umary_ALU_9465_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    99793930    99793930    12    99802771    99802771    1860:copy_number_loss:8841    .    .    .    ID=9553103;Name=essv14586746;Alias=BI_GS_DEL1_B5_P2059_1020_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630526;Start_range=99793916,99793947;End_range=99802757,99802788;submitter_variant_call_id=BI_GS_DEL1_B5_P2059_1020_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    100288336    100288336    12    100291778    100291778    1861:copy_number_loss:3442    .    .    .    ID=9553843;Name=essv14587166;Alias=BI_GS_DEL1_B4_P2060_70_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630542;Start_range=100288335,100288340;End_range=100291777,100291782;submitter_variant_call_id=BI_GS_DEL1_B4_P2060_70_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    102102409    102102409    12    102107114    102107114    1862:copy_number_loss:4705    .    .    .    ID=9560978;Name=essv14590509;Alias=UW_VH_8768_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3630579;Start_range=102102100,102102410;End_range=102107115,102107486;submitter_variant_call_id=UW_VH_8768_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    102855259    102855259    12    102855259    102855259    1863:mobile_element_insertion:0    .    .    .    ID=9561826;Name=essv14591221;Alias=ALU_umary_ALU_9474_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630592;submitter_variant_call_id=ALU_umary_ALU_9474_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    103261864    103261864    12    103261864    103261864    1864:indel:0    .    .    .    ID=9566253;Name=essv14593008;Alias=PHASE3_V1_SV_1476_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630603;submitter_variant_call_id=PHASE3_V1_SV_1476_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    103954145    103954145    12    103954145    103954145    1865:indel:0    .    .    .    ID=9572045;Name=essv14595881;Alias=PHASE3_V1_SV_1478_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630616;submitter_variant_call_id=PHASE3_V1_SV_1478_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    104015097    104015097    12    104015097    104015097    1866:mobile_element_insertion:0    .    .    .    ID=9572822;Name=essv14596639;Alias=ALU_umary_ALU_9482_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630618;submitter_variant_call_id=ALU_umary_ALU_9482_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    105438377    105438377    12    105438377    105438377    1867:mobile_element_insertion:0    .    .    .    ID=9579890;Name=essv14598842;Alias=ALU_umary_ALU_9487_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630658;submitter_variant_call_id=ALU_umary_ALU_9487_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    105774772    105774772    12    105774772    105774772    1868:indel:0    .    .    .    ID=9580684;Name=essv14599746;Alias=PHASE3_V1_SV_1481_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630664;submitter_variant_call_id=PHASE3_V1_SV_1481_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    109887636    109887636    12    109887636    109887636    1869:indel:0    .    .    .    ID=9587362;Name=essv14603856;Alias=PHASE3_V1_SV_1484_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630718;submitter_variant_call_id=PHASE3_V1_SV_1484_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    115731092    115731092    12    115731092    115731092    1870:mobile_element_insertion:0    .    .    .    ID=9598935;Name=essv14609456;Alias=ALU_umary_ALU_9524_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630826;submitter_variant_call_id=ALU_umary_ALU_9524_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    117814459    117814459    12    117814459    117814459    1871:mobile_element_insertion:0    .    .    .    ID=9607907;Name=essv14612805;Alias=L1_umary_LINE1_2365_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630866;submitter_variant_call_id=L1_umary_LINE1_2365_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    120201093    120201093    12    120201093    120201093    1872:indel:0    .    .    .    ID=9615346;Name=essv14617780;Alias=PHASE3_V1_SV_1493_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3630912;submitter_variant_call_id=PHASE3_V1_SV_1493_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    122722287    122722287    12    122722287    122722287    1873:mobile_element_insertion:0    .    .    .    ID=9622672;Name=essv14620968;Alias=ALU_umary_ALU_9546_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3630971;submitter_variant_call_id=ALU_umary_ALU_9546_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    124863563    124863563    12    124863563    124863563    1874:indel:0    .    .    .    ID=9627203;Name=essv14623353;Alias=PHASE3_V1_SV_1496_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631015;submitter_variant_call_id=PHASE3_V1_SV_1496_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    125433317    125433317    12    125433317    125433317    1875:indel:0    .    .    .    ID=9628752;Name=essv14624070;Alias=PHASE3_V1_SV_1497_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631031;submitter_variant_call_id=PHASE3_V1_SV_1497_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    126802942    126802942    12    126802942    126802942    1876:mobile_element_insertion:0    .    .    .    ID=9632454;Name=essv14625429;Alias=L1_umary_LINE1_2369_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631061;submitter_variant_call_id=L1_umary_LINE1_2369_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    127947266    127947266    12    127947266    127947266    1877:indel:0    .    .    .    ID=9638672;Name=essv14628850;Alias=PHASE3_V1_SV_1499_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631115;submitter_variant_call_id=PHASE3_V1_SV_1499_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    130283241    130283241    12    130283241    130283241    1878:indel:0    .    .    .    ID=9649958;Name=essv14632260;Alias=PHASE3_V1_SV_1501_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631183;submitter_variant_call_id=PHASE3_V1_SV_1501_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    130539584    130539584    12    130539584    130539584    1879:indel:0    .    .    .    ID=9654791;Name=essv14636596;Alias=PHASE3_V1_SV_1503_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631195;submitter_variant_call_id=PHASE3_V1_SV_1503_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    131424223    131424223    12    131424223    131424223    1880:mobile_element_insertion:0    .    .    .    ID=9662581;Name=essv14639490;Alias=ALU_umary_ALU_9582_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631213;submitter_variant_call_id=ALU_umary_ALU_9582_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    131582691    131582691    12    131582691    131582691    1881:indel:0    .    .    .    ID=9664157;Name=essv14640823;Alias=PHASE3_V1_SV_1507_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631221;submitter_variant_call_id=PHASE3_V1_SV_1507_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
12    132349664    132349664    12    132349664    132349664    1882:indel:0    .    .    .    ID=9674926;Name=essv14646136;Alias=PHASE3_V1_SV_1511_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631279;submitter_variant_call_id=PHASE3_V1_SV_1511_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
12    132836536    132836536    12    132836536    132836536    1883:indel:0    .    .    .    ID=9679020;Name=essv14648409;Alias=PHASE3_V1_SV_1513_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631289;submitter_variant_call_id=PHASE3_V1_SV_1513_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    19423391    19423391    13    19423391    19423391    1884:mobile_element_insertion:0    .    .    .    ID=9693326;Name=essv14655350;Alias=ALU_umary_ALU_9591_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631365;submitter_variant_call_id=ALU_umary_ALU_9591_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    20342594    20342594    13    20343471    20343471    1885:copy_number_loss:877    .    .    .    ID=9696821;Name=essv14657464;Alias=UW_VH_2898_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631401;Start_range=20342202,20342595;End_range=20343472,20343865;submitter_variant_call_id=UW_VH_2898_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    21894779    21894779    13    21894779    21894779    1886:mobile_element_insertion:0    .    .    .    ID=9705405;Name=essv14660523;Alias=ALU_umary_ALU_9602_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631460;submitter_variant_call_id=ALU_umary_ALU_9602_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    22188493    22188493    13    22188493    22188493    1887:mobile_element_insertion:0    .    .    .    ID=9711154;Name=essv14663719;Alias=ALU_umary_ALU_9605_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631466;submitter_variant_call_id=ALU_umary_ALU_9605_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    23632423    23632423    13    23637292    23637292    1888:copy_number_loss:4869    .    .    .    ID=9718781;Name=essv14668142;Alias=UW_VH_2689_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631510;Start_range=23632063,23632424;End_range=23637293,23637604;submitter_variant_call_id=UW_VH_2689_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    24620694    24620694    13    24620694    24620694    1889:mobile_element_insertion:0    .    .    .    ID=9723192;Name=essv14670555;Alias=ALU_umary_ALU_9625_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631543;submitter_variant_call_id=ALU_umary_ALU_9625_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    26816263    26816263    13    26816263    26816263    1890:mobile_element_insertion:0    .    .    .    ID=9731079;Name=essv14674192;Alias=ALU_umary_ALU_9639_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631597;submitter_variant_call_id=ALU_umary_ALU_9639_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    28268150    28268150    13    28269059    28269059    1891:copy_number_loss:909    .    .    .    ID=9737762;Name=essv14678054;Alias=BI_GS_DEL1_B1_P2122_265_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631623;Start_range=28268150,28268153;End_range=28269059,28269062;submitter_variant_call_id=BI_GS_DEL1_B1_P2122_265_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    31043600    31043600    13    31043824    31043824    1892:copy_number_loss:224    .    .    .    ID=9745596;Name=essv14682081;Alias=BI_GS_DEL1_B4_P2125_9_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631676;Start_range=31043601,31043601;End_range=31043825,31043825;submitter_variant_call_id=BI_GS_DEL1_B4_P2125_9_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    31703503    31703503    13    31705691    31705691    1893:copy_number_loss:2188    .    .    .    ID=9747829;Name=essv14682703;Alias=UW_VH_3367_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631691;Start_range=31703311,31703504;End_range=31705692,31705922;submitter_variant_call_id=UW_VH_3367_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    31892044    31892044    13    31892044    31892044    1894:mobile_element_insertion:0    .    .    .    ID=9748139;Name=essv14683068;Alias=ALU_umary_ALU_9663_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631695;submitter_variant_call_id=ALU_umary_ALU_9663_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    34192593    34192593    13    34193334    34193334    1895:copy_number_loss:741    .    .    .    ID=9756746;Name=essv14687035;Alias=UW_VH_3220_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631743;Start_range=34192280,34192594;End_range=34193335,34193634;submitter_variant_call_id=UW_VH_3220_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    34738965    34738965    13    34738965    34738965    1896:mobile_element_insertion:0    .    .    .    ID=9757216;Name=essv14687843;Alias=ALU_umary_ALU_9683_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631750;submitter_variant_call_id=ALU_umary_ALU_9683_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    36325341    36325341    13    36325341    36325341    1897:mobile_element_insertion:0    .    .    .    ID=9762159;Name=essv14689415;Alias=SVA_umary_SVA_566_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631770;submitter_variant_call_id=SVA_umary_SVA_566_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    36818914    36818914    13    36818914    36818914    1898:indel:0    .    .    .    ID=9763149;Name=essv14691081;Alias=PHASE3_V1_SV_1527_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631779;submitter_variant_call_id=PHASE3_V1_SV_1527_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    37414450    37414450    13    37414778    37414778    1899:copy_number_loss:328    .    .    .    ID=9768643;Name=essv14693083;Alias=BI_GS_DEL1_B4_P2131_83_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631787;Start_range=37414451,37414451;End_range=37414779,37414779;submitter_variant_call_id=BI_GS_DEL1_B4_P2131_83_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    39057316    39057316    13    39060203    39060203    1900:copy_number_loss:2887    .    .    .    ID=9780572;Name=essv14698863;Alias=BI_GS_DEL1_B5_P2133_62_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631820;Start_range=39057317,39057317;End_range=39060204,39060204;submitter_variant_call_id=BI_GS_DEL1_B5_P2133_62_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    39499636    39499636    13    39499636    39499636    1901:mobile_element_insertion:0    .    .    .    ID=9784679;Name=essv14700461;Alias=ALU_umary_ALU_9708_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631827;submitter_variant_call_id=ALU_umary_ALU_9708_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    39934235    39934235    13    39935551    39935551    1902:copy_number_loss:1316    .    .    .    ID=9786059;Name=essv14702395;Alias=SI_BD_12828_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631831;Start_range=39933906,39934286;End_range=39935429,39935882;submitter_variant_call_id=SI_BD_12828_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    41453836    41453836    13    41453836    41453836    1903:indel:0    .    .    .    ID=9790670;Name=essv14704262;Alias=PHASE3_V1_SV_1529_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3631860;submitter_variant_call_id=PHASE3_V1_SV_1529_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    42571559    42571559    13    42571559    42571559    1904:mobile_element_insertion:0    .    .    .    ID=9797833;Name=essv14706124;Alias=ALU_umary_ALU_9724_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631885;submitter_variant_call_id=ALU_umary_ALU_9724_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    42771402    42771402    13    42771402    42771402    1905:mobile_element_insertion:0    .    .    .    ID=9799154;Name=essv14707466;Alias=L1_umary_LINE1_2401_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631891;submitter_variant_call_id=L1_umary_LINE1_2401_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    42940087    42940087    13    42940087    42940087    1906:mobile_element_insertion:0    .    .    .    ID=9799832;Name=essv14708638;Alias=ALU_umary_ALU_9727_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3631892;submitter_variant_call_id=ALU_umary_ALU_9727_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    45042428    45042428    13    45043105    45043105    1907:copy_number_loss:677    .    .    .    ID=9802951;Name=essv14710496;Alias=BI_GS_DEL1_B5_P2139_55_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3631934;Start_range=45042429,45042429;End_range=45043106,45043106;submitter_variant_call_id=BI_GS_DEL1_B5_P2139_55_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    48856685    48856685    13    48856685    48856685    1908:mobile_element_insertion:0    .    .    .    ID=9815426;Name=essv14716504;Alias=L1_umary_LINE1_2406_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632023;submitter_variant_call_id=L1_umary_LINE1_2406_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    50042774    50042774    13    50042774    50042774    1909:mobile_element_insertion:0    .    .    .    ID=9831256;Name=essv14723461;Alias=ALU_umary_ALU_9774_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632049;submitter_variant_call_id=ALU_umary_ALU_9774_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    50122999    50122999    13    50122999    50122999    1910:mobile_element_insertion:0    .    .    .    ID=9832084;Name=essv14724292;Alias=ALU_umary_ALU_9775_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632051;submitter_variant_call_id=ALU_umary_ALU_9775_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    50912088    50912088    13    50912088    50912088    1911:mobile_element_insertion:0    .    .    .    ID=9837631;Name=essv14726427;Alias=ALU_umary_ALU_9780_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632065;submitter_variant_call_id=ALU_umary_ALU_9780_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    51069346    51069346    13    51075081    51075081    1912:copy_number_loss:5735    .    .    .    ID=9839883;Name=essv14728352;Alias=BI_GS_DEL1_B1_P2145_60_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632068;Start_range=51069347,51069347;End_range=51075082,51075082;submitter_variant_call_id=BI_GS_DEL1_B1_P2145_60_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    52852411    52852411    13    52864556    52864556    1913:copy_number_gain:12145    .    .    .    ID=9844731;Name=essv14730679;Alias=DUP_gs_CNV_13_52852412_52864557_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3632087;submitter_variant_call_id=DUP_gs_CNV_13_52852412_52864557_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    53433791    53433791    13    53433791    53433791    1914:mobile_element_insertion:0    .    .    .    ID=9847179;Name=essv14732525;Alias=ALU_umary_ALU_9789_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632107;submitter_variant_call_id=ALU_umary_ALU_9789_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    54606528    54606528    13    54606528    54606528    1915:mobile_element_insertion:0    .    .    .    ID=9850287;Name=essv14733944;Alias=ALU_umary_ALU_9795_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632129;submitter_variant_call_id=ALU_umary_ALU_9795_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    55941165    55941165    13    55941468    55941468    1916:copy_number_loss:303    .    .    .    ID=9859797;Name=essv14736448;Alias=BI_GS_DEL1_B5_P2149_924_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632157;Start_range=55941166,55941167;End_range=55941469,55941470;submitter_variant_call_id=BI_GS_DEL1_B5_P2149_924_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    55952595    55952595    13    55952595    55952595    1917:indel:0    .    .    .    ID=9861368;Name=essv14738552;Alias=PHASE3_V1_SV_1540_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632158;submitter_variant_call_id=PHASE3_V1_SV_1540_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    56186575    56186575    13    56186575    56186575    1918:mobile_element_insertion:0    .    .    .    ID=9864279;Name=essv14740578;Alias=ALU_umary_ALU_9803_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632165;submitter_variant_call_id=ALU_umary_ALU_9803_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    58621065    58621065    13    58621065    58621065    1919:mobile_element_insertion:0    .    .    .    ID=9885553;Name=essv14750935;Alias=ALU_umary_ALU_9813_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632258;submitter_variant_call_id=ALU_umary_ALU_9813_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    58761424    58761424    13    58761424    58761424    1920:mobile_element_insertion:0    .    .    .    ID=9886595;Name=essv14752002;Alias=ALU_umary_ALU_9815_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632262;submitter_variant_call_id=ALU_umary_ALU_9815_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    59396894    59396894    13    59396894    59396894    1921:mobile_element_insertion:0    .    .    .    ID=9892926;Name=essv14755297;Alias=ALU_umary_ALU_9821_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632276;submitter_variant_call_id=ALU_umary_ALU_9821_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    61162471    61162471    13    61162471    61162471    1922:mobile_element_insertion:0    .    .    .    ID=9904413;Name=essv14756872;Alias=ALU_umary_ALU_9834_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632302;submitter_variant_call_id=ALU_umary_ALU_9834_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    61462343    61462343    13    61462343    61462343    1923:mobile_element_insertion:0    .    .    .    ID=9909192;Name=essv14760313;Alias=L1_umary_LINE1_2422_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632316;submitter_variant_call_id=L1_umary_LINE1_2422_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    61465028    61465028    13    61465028    61465028    1924:indel:0    .    .    .    ID=9911177;Name=essv14762085;Alias=PHASE3_V1_SV_1544_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632317;submitter_variant_call_id=PHASE3_V1_SV_1544_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    61734496    61734496    13    61734496    61734496    1925:mobile_element_insertion:0    .    .    .    ID=9913101;Name=essv14764623;Alias=L1_umary_LINE1_2424_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632330;submitter_variant_call_id=L1_umary_LINE1_2424_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    62721073    62721073    13    62721073    62721073    1926:mobile_element_insertion:0    .    .    .    ID=9919710;Name=essv14768241;Alias=ALU_umary_ALU_9849_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632364;submitter_variant_call_id=ALU_umary_ALU_9849_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    65637800    65637800    13    65638215    65638215    1927:copy_number_loss:415    .    .    .    ID=9932682;Name=essv14774078;Alias=UW_VH_1004_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632463;Start_range=65637264,65637801;End_range=65638216,65638701;submitter_variant_call_id=UW_VH_1004_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    66014521    66014521    13    66014521    66014521    1928:mobile_element_insertion:0    .    .    .    ID=9934377;Name=essv14775347;Alias=ALU_umary_ALU_9869_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632477;submitter_variant_call_id=ALU_umary_ALU_9869_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    66620356    66620356    13    66620356    66620356    1929:indel:0    .    .    .    ID=9937771;Name=essv14776680;Alias=PHASE3_V1_SV_1552_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632495;submitter_variant_call_id=PHASE3_V1_SV_1552_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    67174779    67174779    13    67177424    67177424    1930:copy_number_loss:2645    .    .    .    ID=9939325;Name=essv14777980;Alias=BI_GS_DEL1_B2_P2161_105_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632513;Start_range=67174780,67174780;End_range=67177425,67177425;submitter_variant_call_id=BI_GS_DEL1_B2_P2161_105_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    67903470    67903470    13    67903470    67903470    1931:mobile_element_insertion:0    .    .    .    ID=9944238;Name=essv14779835;Alias=ALU_umary_ALU_9886_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632542;submitter_variant_call_id=ALU_umary_ALU_9886_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    69670763    69670763    13    69670763    69670763    1932:mobile_element_insertion:0    .    .    .    ID=9954402;Name=essv14785304;Alias=ALU_umary_ALU_9898_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632610;submitter_variant_call_id=ALU_umary_ALU_9898_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    70056960    70056960    13    70056960    70056960    1933:mobile_element_insertion:0    .    .    .    ID=9956621;Name=essv14786259;Alias=ALU_umary_ALU_9901_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632621;submitter_variant_call_id=ALU_umary_ALU_9901_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    72477263    72477263    13    72480579    72480579    1934:copy_number_loss:3316    .    .    .    ID=9967017;Name=essv14790733;Alias=BI_GS_DEL1_B1_P2166_364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632679;Start_range=72477264,72477264;End_range=72480580,72480580;submitter_variant_call_id=BI_GS_DEL1_B1_P2166_364_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    72807611    72807611    13    72812360    72812360    1935:copy_number_loss:4749    .    .    .    ID=9968879;Name=essv14791676;Alias=DUP_gs_CNV_13_72807612_72812361_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632689;submitter_variant_call_id=DUP_gs_CNV_13_72807612_72812361_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    72843030    72843030    13    72846922    72846922    1936:copy_number_loss:3892    .    .    .    ID=9970283;Name=essv14793052;Alias=UW_VH_1012_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632692;Start_range=72842599,72843031;End_range=72846923,72847371;submitter_variant_call_id=UW_VH_1012_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    72851438    72851438    13    72851438    72851438    1937:mobile_element_insertion:0    .    .    .    ID=9970633;Name=essv14793527;Alias=ALU_umary_ALU_9920_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632693;submitter_variant_call_id=ALU_umary_ALU_9920_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    74383630    74383630    13    74383630    74383630    1938:indel:0    .    .    .    ID=9974978;Name=essv14795774;Alias=PHASE3_V1_SV_1560_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632716;submitter_variant_call_id=PHASE3_V1_SV_1560_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    76345681    76345681    13    76345681    76345681    1939:indel:0    .    .    .    ID=9983758;Name=essv14800060;Alias=PHASE3_V1_SV_1562_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632753;submitter_variant_call_id=PHASE3_V1_SV_1562_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    78584670    78584670    13    78584670    78584670    1940:mobile_element_insertion:0    .    .    .    ID=9992826;Name=essv14802796;Alias=ALU_umary_ALU_9941_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632789;submitter_variant_call_id=ALU_umary_ALU_9941_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    78651686    78651686    13    78651686    78651686    1941:mobile_element_insertion:0    .    .    .    ID=9994601;Name=essv14804473;Alias=ALU_umary_ALU_9943_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632791;submitter_variant_call_id=ALU_umary_ALU_9943_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    78997597    78997597    13    78998714    78998714    1942:copy_number_loss:1117    .    .    .    ID=10000902;Name=essv14806103;Alias=BI_GS_DEL1_B4_P2172_239_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632798;Start_range=78997598,78997598;End_range=78998715,78998715;submitter_variant_call_id=BI_GS_DEL1_B4_P2172_239_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    79259799    79259799    13    79259799    79259799    1943:mobile_element_insertion:0    .    .    .    ID=10004816;Name=essv14808228;Alias=L1_umary_LINE1_2461_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632803;submitter_variant_call_id=L1_umary_LINE1_2461_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    79271600    79271600    13    79271600    79271600    1944:mobile_element_insertion:0    .    .    .    ID=10007001;Name=essv14810636;Alias=ALU_umary_ALU_9947_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632804;submitter_variant_call_id=ALU_umary_ALU_9947_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    79757405    79757405    13    79757405    79757405    1945:indel:0    .    .    .    ID=10009960;Name=essv14812038;Alias=PHASE3_V1_SV_1565_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3632813;submitter_variant_call_id=PHASE3_V1_SV_1565_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    81810191    81810191    13    81810191    81810191    1946:mobile_element_insertion:0    .    .    .    ID=10021453;Name=essv14817627;Alias=ALU_umary_ALU_9963_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632857;submitter_variant_call_id=ALU_umary_ALU_9963_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    82367710    82367710    13    82367710    82367710    1947:mobile_element_insertion:0    .    .    .    ID=10022405;Name=essv14819487;Alias=SVA_umary_SVA_582_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632875;submitter_variant_call_id=SVA_umary_SVA_582_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    83165933    83165933    13    83172205    83172205    1948:copy_number_loss:6272    .    .    .    ID=10026543;Name=essv14821139;Alias=BI_GS_DEL1_B5_P2177_134_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632892;Start_range=83165934,83165934;End_range=83172206,83172206;submitter_variant_call_id=BI_GS_DEL1_B5_P2177_134_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    83747483    83747483    13    83747483    83747483    1949:mobile_element_insertion:0    .    .    .    ID=10028031;Name=essv14821955;Alias=ALU_umary_ALU_9977_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632904;submitter_variant_call_id=ALU_umary_ALU_9977_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    85473574    85473574    13    85473574    85473574    1950:mobile_element_insertion:0    .    .    .    ID=10032246;Name=essv14822712;Alias=ALU_umary_ALU_9985_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632963;submitter_variant_call_id=ALU_umary_ALU_9985_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    85820351    85820351    13    85820351    85820351    1951:mobile_element_insertion:0    .    .    .    ID=10035353;Name=essv14822950;Alias=ALU_umary_ALU_9986_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632973;submitter_variant_call_id=ALU_umary_ALU_9986_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    85871611    85871611    13    85871611    85871611    1952:mobile_element_insertion:0    .    .    .    ID=10036716;Name=essv14824251;Alias=L1_umary_LINE1_2467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632977;submitter_variant_call_id=L1_umary_LINE1_2467_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    85936697    85936697    13    85937631    85937631    1953:copy_number_loss:934    .    .    .    ID=10037793;Name=essv14825356;Alias=BI_GS_DEL1_B5_P2179_944_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3632979;Start_range=85936698,85936698;End_range=85937632,85937632;submitter_variant_call_id=BI_GS_DEL1_B5_P2179_944_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    86340151    86340151    13    86340151    86340151    1954:mobile_element_insertion:0    .    .    .    ID=10040463;Name=essv14828013;Alias=L1_umary_LINE1_2470_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3632993;submitter_variant_call_id=L1_umary_LINE1_2470_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    87392968    87392968    13    87392968    87392968    1955:mobile_element_insertion:0    .    .    .    ID=10049499;Name=essv14830568;Alias=ALU_umary_ALU_9995_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633019;submitter_variant_call_id=ALU_umary_ALU_9995_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    87600201    87600201    13    87600201    87600201    1956:indel:0    .    .    .    ID=10050403;Name=essv14832276;Alias=PHASE3_V1_SV_1569_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633027;submitter_variant_call_id=PHASE3_V1_SV_1569_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    87696256    87696256    13    87696256    87696256    1957:mobile_element_insertion:0    .    .    .    ID=10052540;Name=essv14833760;Alias=ALU_umary_ALU_9998_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633030;submitter_variant_call_id=ALU_umary_ALU_9998_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    89372281    89372281    13    89372281    89372281    1958:indel:0    .    .    .    ID=10057327;Name=essv14836041;Alias=PHASE3_V1_SV_1571_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633070;submitter_variant_call_id=PHASE3_V1_SV_1571_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    90038685    90038685    13    90038685    90038685    1959:mobile_element_insertion:0    .    .    .    ID=10064643;Name=essv14837543;Alias=ALU_umary_ALU_10010_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633095;submitter_variant_call_id=ALU_umary_ALU_10010_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    90321199    90321199    13    90321199    90321199    1960:mobile_element_insertion:0    .    .    .    ID=10070945;Name=essv14838883;Alias=ALU_umary_ALU_10011_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633101;submitter_variant_call_id=ALU_umary_ALU_10011_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    90550574    90550574    13    90550574    90550574    1961:mobile_element_insertion:0    .    .    .    ID=10074605;Name=essv14842375;Alias=ALU_umary_ALU_10014_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633109;submitter_variant_call_id=ALU_umary_ALU_10014_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    90903275    90903275    13    90903275    90903275    1962:mobile_element_insertion:0    .    .    .    ID=10078289;Name=essv14845735;Alias=ALU_umary_ALU_10017_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633120;submitter_variant_call_id=ALU_umary_ALU_10017_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    90947641    90947641    13    90947641    90947641    1963:mobile_element_insertion:0    .    .    .    ID=10079894;Name=essv14847358;Alias=ALU_umary_ALU_10018_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633124;submitter_variant_call_id=ALU_umary_ALU_10018_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    91626230    91626230    13    91626230    91626230    1964:mobile_element_insertion:0    .    .    .    ID=10084786;Name=essv14848389;Alias=L1_umary_LINE1_2476_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633146;submitter_variant_call_id=L1_umary_LINE1_2476_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    92261285    92261285    13    92261285    92261285    1965:mobile_element_insertion:0    .    .    .    ID=10092865;Name=essv14851517;Alias=ALU_umary_ALU_10025_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633153;submitter_variant_call_id=ALU_umary_ALU_10025_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    92513979    92513979    13    92513979    92513979    1966:mobile_element_insertion:0    .    .    .    ID=10096326;Name=essv14853160;Alias=ALU_umary_ALU_10026_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633157;submitter_variant_call_id=ALU_umary_ALU_10026_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    92825237    92825237    13    92825237    92825237    1967:mobile_element_insertion:0    .    .    .    ID=10097915;Name=essv14854717;Alias=ALU_umary_ALU_10029_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633169;submitter_variant_call_id=ALU_umary_ALU_10029_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    92892086    92892086    13    92892086    92892086    1968:indel:0    .    .    .    ID=10099787;Name=essv14856371;Alias=PHASE3_V1_SV_1576_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633172;submitter_variant_call_id=PHASE3_V1_SV_1576_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    93555561    93555561    13    93555561    93555561    1969:indel:0    .    .    .    ID=10109846;Name=essv14860443;Alias=PHASE3_V1_SV_1577_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633185;submitter_variant_call_id=PHASE3_V1_SV_1577_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    93828420    93828420    13    93828420    93828420    1970:mobile_element_insertion:0    .    .    .    ID=10114808;Name=essv14862802;Alias=ALU_umary_ALU_10036_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633193;submitter_variant_call_id=ALU_umary_ALU_10036_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    94392427    94392427    13    94392427    94392427    1971:indel:0    .    .    .    ID=10117367;Name=essv14866837;Alias=PHASE3_V1_SV_1579_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633216;submitter_variant_call_id=PHASE3_V1_SV_1579_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    99254020    99254020    13    99258250    99258250    1972:copy_number_loss:4230    .    .    .    ID=10128960;Name=essv14871415;Alias=YL_CN_GIH_2351_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633314;Start_range=99253021,99254521;End_range=99257751,99259251;submitter_variant_call_id=YL_CN_GIH_2351_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    99765008    99765008    13    99765008    99765008    1973:mobile_element_insertion:0    .    .    .    ID=10133080;Name=essv14872704;Alias=ALU_umary_ALU_10063_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633325;submitter_variant_call_id=ALU_umary_ALU_10063_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    100082626    100082626    13    100082626    100082626    1974:mobile_element_insertion:0    .    .    .    ID=10134017;Name=essv14874769;Alias=ALU_umary_ALU_10064_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633330;submitter_variant_call_id=ALU_umary_ALU_10064_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    101535972    101535972    13    101535972    101535972    1975:mobile_element_insertion:0    .    .    .    ID=10140771;Name=essv14876563;Alias=ALU_umary_ALU_10068_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633354;submitter_variant_call_id=ALU_umary_ALU_10068_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    101894134    101894134    13    101896427    101896427    1976:copy_number_loss:2293    .    .    .    ID=10144276;Name=essv14879065;Alias=UW_VH_13766_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633358;Start_range=101893686,101894135;End_range=101896428,101896974;submitter_variant_call_id=UW_VH_13766_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    104091775    104091775    13    104092257    104092257    1977:copy_number_loss:482    .    .    .    ID=10153860;Name=essv14882732;Alias=SI_BD_13206_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633397;Start_range=104091526,104091826;End_range=104092208,104092508;submitter_variant_call_id=SI_BD_13206_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    104296230    104296230    13    104296230    104296230    1978:indel:0    .    .    .    ID=10155445;Name=essv14885101;Alias=PHASE3_V1_SV_1586_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633403;submitter_variant_call_id=PHASE3_V1_SV_1586_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    104558094    104558094    13    104558094    104558094    1979:mobile_element_insertion:0    .    .    .    ID=10157245;Name=essv14886068;Alias=ALU_umary_ALU_10081_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633410;submitter_variant_call_id=ALU_umary_ALU_10081_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    105714936    105714936    13    105714936    105714936    1980:mobile_element_insertion:0    .    .    .    ID=10160987;Name=essv14887967;Alias=ALU_umary_ALU_10085_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633435;submitter_variant_call_id=ALU_umary_ALU_10085_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    106449326    106449326    13    106449920    106449920    1981:copy_number_loss:594    .    .    .    ID=10164463;Name=essv14889854;Alias=BI_GS_DEL1_B3_P2200_14_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633452;Start_range=106449327,106449327;End_range=106449921,106449921;submitter_variant_call_id=BI_GS_DEL1_B3_P2200_14_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    108669029    108669029    13    108669029    108669029    1982:mobile_element_insertion:0    .    .    .    ID=10170812;Name=essv14892207;Alias=ALU_umary_ALU_10096_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633496;submitter_variant_call_id=ALU_umary_ALU_10096_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    109361751    109361751    13    109362441    109362441    1983:copy_number_loss:690    .    .    .    ID=10174999;Name=essv14895053;Alias=BI_GS_DEL1_B3_P2203_15_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633509;Start_range=109361752,109361752;End_range=109362442,109362442;submitter_variant_call_id=BI_GS_DEL1_B3_P2203_15_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    113616375    113616375    13    113616375    113616375    1984:indel:0    .    .    .    ID=10199891;Name=essv14905670;Alias=PHASE3_V1_SV_1594_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633593;submitter_variant_call_id=PHASE3_V1_SV_1594_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
13    113991046    113991046    13    113991046    113991046    1985:indel:0    .    .    .    ID=10202335;Name=essv14908053;Alias=PHASE3_V1_SV_1595_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633600;submitter_variant_call_id=PHASE3_V1_SV_1595_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
13    114505557    114505557    13    114506636    114506636    1986:copy_number_loss:1079    .    .    .    ID=10205221;Name=essv14909410;Alias=BI_GS_DEL1_B1_P2208_297_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633620;Start_range=114505558,114505558;End_range=114506637,114506637;submitter_variant_call_id=BI_GS_DEL1_B1_P2208_297_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    19112154    19112154    14    19126472    19126472    1987:copy_number_gain:14318    .    .    .    ID=10214122;Name=essv14912468;Alias=DUP_gs_CNV_14_19112155_19126473_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3633648;submitter_variant_call_id=DUP_gs_CNV_14_19112155_19126473_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    20484311    20484311    14    20484311    20484311    1988:mobile_element_insertion:0    .    .    .    ID=10231142;Name=essv14920863;Alias=ALU_umary_ALU_10130_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633671;submitter_variant_call_id=ALU_umary_ALU_10130_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    20550913    20550913    14    20555140    20555140    1989:copy_number_loss:4227    .    .    .    ID=10232543;Name=essv14923041;Alias=DUP_gs_CNV_14_20550914_20555141_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633675;submitter_variant_call_id=DUP_gs_CNV_14_20550914_20555141_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    21176133    21176133    14    21176133    21176133    1990:mobile_element_insertion:0    .    .    .    ID=10237025;Name=essv14925228;Alias=SVA_umary_SVA_587_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633689;submitter_variant_call_id=SVA_umary_SVA_587_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    21778184    21778184    14    21778396    21778396    1991:copy_number_loss:212    .    .    .    ID=10243595;Name=essv14927521;Alias=BI_GS_DEL1_B5_P2231_956_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633709;Start_range=21778185,21778185;End_range=21778397,21778397;submitter_variant_call_id=BI_GS_DEL1_B5_P2231_956_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    21952623    21952623    14    21954665    21954665    1992:copy_number_loss:2042    .    .    .    ID=10245831;Name=essv14929566;Alias=UW_VH_11113_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633717;Start_range=21952207,21952624;End_range=21954666,21955174;submitter_variant_call_id=UW_VH_11113_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    23922250    23922250    14    23922649    23922649    1993:copy_number_loss:399    .    .    .    ID=10259591;Name=essv14936533;Alias=BI_GS_DEL1_B1_P2233_760_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633777;Start_range=23922251,23922251;End_range=23922650,23922650;submitter_variant_call_id=BI_GS_DEL1_B1_P2233_760_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    24236375    24236375    14    24236375    24236375    1994:indel:0    .    .    .    ID=10263977;Name=essv14938606;Alias=PHASE3_V1_SV_1602_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633784;submitter_variant_call_id=PHASE3_V1_SV_1602_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    24394552    24394552    14    24394552    24394552    1995:indel:0    .    .    .    ID=10267496;Name=essv14940948;Alias=PHASE3_V1_SV_1604_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633789;submitter_variant_call_id=PHASE3_V1_SV_1604_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    24437923    24437923    14    24474886    24474886    1996:copy_number_loss:36963    .    .    .    ID=10268251;Name=essv14941749;Alias=YL_CN_GIH_2411_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633792;Start_range=24436924,24438424;End_range=24474387,24475887;submitter_variant_call_id=YL_CN_GIH_2411_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    24449757    24449757    14    24464786    24464786    1997:copy_number_loss:15029    .    .    .    ID=10268486;Name=essv14941955;Alias=DUP_gs_CNV_14_24449758_24464787_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633795;submitter_variant_call_id=DUP_gs_CNV_14_24449758_24464787_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    26283833    26283833    14    26284790    26284790    1998:copy_number_loss:957    .    .    .    ID=10276296;Name=essv14945566;Alias=BI_GS_DEL1_B5_P2236_344_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633837;Start_range=26283822,26283847;End_range=26284779,26284804;submitter_variant_call_id=BI_GS_DEL1_B5_P2236_344_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    28301263    28301263    14    28301263    28301263    1999:mobile_element_insertion:0    .    .    .    ID=10282430;Name=essv14949160;Alias=L1_umary_LINE1_2516_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633890;submitter_variant_call_id=L1_umary_LINE1_2516_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    31444308    31444308    14    31444308    31444308    2000:mobile_element_insertion:0    .    .    .    ID=10293667;Name=essv14954495;Alias=ALU_umary_ALU_10183_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3633961;submitter_variant_call_id=ALU_umary_ALU_10183_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    33368366    33368366    14    33368366    33368366    2001:indel:0    .    .    .    ID=10304522;Name=essv14959727;Alias=PHASE3_V1_SV_1614_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3633996;submitter_variant_call_id=PHASE3_V1_SV_1614_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    33391978    33391978    14    33392319    33392319    2002:copy_number_loss:341    .    .    .    ID=10305479;Name=essv14960491;Alias=BI_GS_DEL1_B1_P2243_339_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3633997;Start_range=33391979,33391979;End_range=33392320,33392320;submitter_variant_call_id=BI_GS_DEL1_B1_P2243_339_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    34493353    34493353    14    34493353    34493353    2003:mobile_element_insertion:0    .    .    .    ID=10313090;Name=essv14963491;Alias=ALU_umary_ALU_10199_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634018;submitter_variant_call_id=ALU_umary_ALU_10199_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    34514027    34514027    14    34514837    34514837    2004:copy_number_loss:810    .    .    .    ID=10313944;Name=essv14964437;Alias=BI_GS_DEL1_B2_P2244_373_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634019;Start_range=34514028,34514028;End_range=34514838,34514838;submitter_variant_call_id=BI_GS_DEL1_B2_P2244_373_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    36674759    36674759    14    36674759    36674759    2005:mobile_element_insertion:0    .    .    .    ID=10323784;Name=essv14969286;Alias=L1_umary_LINE1_2536_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634073;submitter_variant_call_id=L1_umary_LINE1_2536_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    38359642    38359642    14    38359642    38359642    2006:mobile_element_insertion:0    .    .    .    ID=10327100;Name=essv14971389;Alias=ALU_umary_ALU_10218_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634103;submitter_variant_call_id=ALU_umary_ALU_10218_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    39004498    39004498    14    39005025    39005025    2007:copy_number_loss:527    .    .    .    ID=10331053;Name=essv14972956;Alias=BI_GS_DEL1_B2_P2249_6_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634123;Start_range=39004499,39004500;End_range=39005026,39005027;submitter_variant_call_id=BI_GS_DEL1_B2_P2249_6_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    39533237    39533237    14    39533237    39533237    2008:mobile_element_insertion:0    .    .    .    ID=10335017;Name=essv14974554;Alias=SVA_umary_SVA_594_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634137;submitter_variant_call_id=SVA_umary_SVA_594_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    39875096    39875096    14    39875096    39875096    2009:mobile_element_insertion:0    .    .    .    ID=10338955;Name=essv14975604;Alias=L1_umary_LINE1_2544_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634145;submitter_variant_call_id=L1_umary_LINE1_2544_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    40312965    40312965    14    40312965    40312965    2010:mobile_element_insertion:0    .    .    .    ID=10344050;Name=essv14977421;Alias=ALU_umary_ALU_10232_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634159;submitter_variant_call_id=ALU_umary_ALU_10232_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    40579684    40579684    14    40579684    40579684    2011:mobile_element_insertion:0    .    .    .    ID=10348595;Name=essv14980071;Alias=ALU_umary_ALU_10235_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634164;submitter_variant_call_id=ALU_umary_ALU_10235_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    40592397    40592397    14    40592397    40592397    2012:mobile_element_insertion:0    .    .    .    ID=10349747;Name=essv14981045;Alias=ALU_umary_ALU_10236_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634165;submitter_variant_call_id=ALU_umary_ALU_10236_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    40609820    40609820    14    40617661    40617661    2013:copy_number_loss:7841    .    .    .    ID=10351421;Name=essv14982337;Alias=UW_VH_1041_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634167;Start_range=40609261,40609821;End_range=40617662,40618081;submitter_variant_call_id=UW_VH_1041_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    40882899    40882899    14    40882899    40882899    2014:mobile_element_insertion:0    .    .    .    ID=10352654;Name=essv14984035;Alias=ALU_umary_ALU_10240_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634175;submitter_variant_call_id=ALU_umary_ALU_10240_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    43241837    43241837    14    43241837    43241837    2015:indel:0    .    .    .    ID=10370733;Name=essv14991411;Alias=PHASE3_V1_SV_1627_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3634251;submitter_variant_call_id=PHASE3_V1_SV_1627_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    43549925    43549925    14    43549925    43549925    2016:indel:0    .    .    .    ID=10378449;Name=essv14994572;Alias=PHASE3_V1_SV_1629_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3634266;submitter_variant_call_id=PHASE3_V1_SV_1629_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    43899449    43899449    14    43899449    43899449    2017:indel:0    .    .    .    ID=10381468;Name=essv14998283;Alias=PHASE3_V1_SV_1630_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3634286;submitter_variant_call_id=PHASE3_V1_SV_1630_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    44522312    44522312    14    44522312    44522312    2018:mobile_element_insertion:0    .    .    .    ID=10385606;Name=essv15000120;Alias=ALU_umary_ALU_10263_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634310;submitter_variant_call_id=ALU_umary_ALU_10263_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    45014098    45014098    14    45014098    45014098    2019:mobile_element_insertion:0    .    .    .    ID=10389502;Name=essv15001953;Alias=ALU_umary_ALU_10265_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634332;submitter_variant_call_id=ALU_umary_ALU_10265_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    47836101    47836101    14    47836101    47836101    2020:mobile_element_insertion:0    .    .    .    ID=10393199;Name=essv15003795;Alias=ALU_umary_ALU_10284_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634411;submitter_variant_call_id=ALU_umary_ALU_10284_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    48135465    48135465    14    48135465    48135465    2021:indel:0    .    .    .    ID=10394188;Name=essv15004511;Alias=PHASE3_V1_SV_1632_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3634415;submitter_variant_call_id=PHASE3_V1_SV_1632_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    51432093    51432093    14    51432093    51432093    2022:mobile_element_insertion:0    .    .    .    ID=10402857;Name=essv15007730;Alias=ALU_umary_ALU_10299_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634495;submitter_variant_call_id=ALU_umary_ALU_10299_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    52643766    52643766    14    52643766    52643766    2023:mobile_element_insertion:0    .    .    .    ID=10410667;Name=essv15011713;Alias=ALU_umary_ALU_10309_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634518;submitter_variant_call_id=ALU_umary_ALU_10309_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    52667766    52667766    14    52667766    52667766    2024:mobile_element_insertion:0    .    .    .    ID=10411984;Name=essv15013416;Alias=L1_umary_LINE1_2559_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634519;submitter_variant_call_id=L1_umary_LINE1_2559_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    53778126    53778126    14    53778126    53778126    2025:mobile_element_insertion:0    .    .    .    ID=10417012;Name=essv15015497;Alias=ALU_umary_ALU_10312_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634540;submitter_variant_call_id=ALU_umary_ALU_10312_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    55795870    55795870    14    55795870    55795870    2026:mobile_element_insertion:0    .    .    .    ID=10426022;Name=essv15020168;Alias=ALU_umary_ALU_10325_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634577;submitter_variant_call_id=ALU_umary_ALU_10325_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    57508005    57508005    14    57508005    57508005    2027:mobile_element_insertion:0    .    .    .    ID=10433759;Name=essv15023617;Alias=ALU_umary_ALU_10333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634602;submitter_variant_call_id=ALU_umary_ALU_10333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    59220401    59220401    14    59220401    59220401    2028:mobile_element_insertion:0    .    .    .    ID=10436781;Name=essv15025487;Alias=L1_umary_LINE1_2571_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634630;submitter_variant_call_id=L1_umary_LINE1_2571_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    59883502    59883502    14    59884058    59884058    2029:copy_number_loss:556    .    .    .    ID=10440568;Name=essv15027004;Alias=BI_GS_DEL1_B3_P2269_45_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634648;Start_range=59883503,59883503;End_range=59884059,59884059;submitter_variant_call_id=BI_GS_DEL1_B3_P2269_45_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    60341397    60341397    14    60343243    60343243    2030:copy_number_loss:1846    .    .    .    ID=10448573;Name=essv15028435;Alias=BI_GS_DEL1_B5_P2270_464_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634658;Start_range=60341398,60341398;End_range=60343244,60343244;submitter_variant_call_id=BI_GS_DEL1_B5_P2270_464_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    60454170    60454170    14    60454170    60454170    2031:mobile_element_insertion:0    .    .    .    ID=10449958;Name=essv15030138;Alias=ALU_umary_ALU_10348_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634661;submitter_variant_call_id=ALU_umary_ALU_10348_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    60532405    60532405    14    60532405    60532405    2032:mobile_element_insertion:0    .    .    .    ID=10452238;Name=essv15031459;Alias=ALU_umary_ALU_10349_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634665;submitter_variant_call_id=ALU_umary_ALU_10349_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    60575498    60575498    14    60575498    60575498    2033:mobile_element_insertion:0    .    .    .    ID=10453066;Name=essv15033045;Alias=ALU_umary_ALU_10350_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634666;submitter_variant_call_id=ALU_umary_ALU_10350_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    63226291    63226291    14    63226291    63226291    2034:mobile_element_insertion:0    .    .    .    ID=10463200;Name=essv15038500;Alias=ALU_umary_ALU_10360_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634713;submitter_variant_call_id=ALU_umary_ALU_10360_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    65015042    65015042    14    65015042    65015042    2035:mobile_element_insertion:0    .    .    .    ID=10470228;Name=essv15041909;Alias=ALU_umary_ALU_10368_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634755;submitter_variant_call_id=ALU_umary_ALU_10368_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    65606352    65606352    14    65608022    65608022    2036:copy_number_loss:1670    .    .    .    ID=10474060;Name=essv15043764;Alias=UW_VH_22798_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634764;Start_range=65606142,65606353;End_range=65608023,65608236;submitter_variant_call_id=UW_VH_22798_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    68603031    68603031    14    68603739    68603739    2037:copy_number_loss:708    .    .    .    ID=10484064;Name=essv15047822;Alias=BI_GS_DEL1_B5_P2278_718_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634815;Start_range=68603030,68603035;End_range=68603738,68603743;submitter_variant_call_id=BI_GS_DEL1_B5_P2278_718_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    68995379    68995379    14    68995379    68995379    2038:indel:0    .    .    .    ID=10487242;Name=essv15050443;Alias=PHASE3_V1_SV_1651_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3634827;submitter_variant_call_id=PHASE3_V1_SV_1651_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    70687828    70687828    14    70689461    70689461    2039:copy_number_loss:1633    .    .    .    ID=10491290;Name=essv15052615;Alias=BI_GS_DEL1_B5_P2280_931_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634853;Start_range=70687829,70687830;End_range=70689462,70689463;submitter_variant_call_id=BI_GS_DEL1_B5_P2280_931_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    71480283    71480283    14    71480283    71480283    2040:mobile_element_insertion:0    .    .    .    ID=10493565;Name=essv15053825;Alias=ALU_umary_ALU_10393_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634872;submitter_variant_call_id=ALU_umary_ALU_10393_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    73997194    73997194    14    74024602    74024602    2041:copy_number_loss:27408    .    .    .    ID=10504129;Name=essv15057064;Alias=YL_CN_MXL_2626_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634909;Start_range=73996195,73997695;End_range=74024103,74025603;submitter_variant_call_id=YL_CN_MXL_2626_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    74011082    74011082    14    74024006    74024006    2042:copy_number_loss:12924    .    .    .    ID=10505898;Name=essv15058818;Alias=DUP_gs_CNV_14_74011083_74024007_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634910;submitter_variant_call_id=DUP_gs_CNV_14_74011083_74024007_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    74186545    74186545    14    74186545    74186545    2043:mobile_element_insertion:0    .    .    .    ID=10507265;Name=essv15060434;Alias=ALU_umary_ALU_10396_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634918;submitter_variant_call_id=ALU_umary_ALU_10396_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    74239802    74239802    14    74246947    74246947    2044:copy_number_loss:7145    .    .    .    ID=10508100;Name=essv15060844;Alias=BI_GS_DEL1_B1_P2284_133_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3634919;Start_range=74239801,74239805;End_range=74246946,74246950;submitter_variant_call_id=BI_GS_DEL1_B1_P2284_133_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    74942157    74942157    14    74942157    74942157    2045:mobile_element_insertion:0    .    .    .    ID=10510313;Name=essv15061917;Alias=ALU_umary_ALU_10400_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634945;submitter_variant_call_id=ALU_umary_ALU_10400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    75499580    75499580    14    75499580    75499580    2046:mobile_element_insertion:0    .    .    .    ID=10513787;Name=essv15063365;Alias=ALU_umary_ALU_10401_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634952;submitter_variant_call_id=ALU_umary_ALU_10401_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    77116242    77116242    14    77116242    77116242    2047:mobile_element_insertion:0    .    .    .    ID=10523904;Name=essv15068562;Alias=ALU_umary_ALU_10412_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3634988;submitter_variant_call_id=ALU_umary_ALU_10412_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    78982708    78982708    14    78982708    78982708    2048:mobile_element_insertion:0    .    .    .    ID=10529097;Name=essv15071135;Alias=ALU_umary_ALU_10421_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635030;submitter_variant_call_id=ALU_umary_ALU_10421_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    79653926    79653926    14    79653926    79653926    2049:indel:0    .    .    .    ID=10536524;Name=essv15073587;Alias=PHASE3_V1_SV_1657_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3635041;submitter_variant_call_id=PHASE3_V1_SV_1657_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    80106271    80106271    14    80115057    80115057    2050:copy_number_loss:8786    .    .    .    ID=10539577;Name=essv15076449;Alias=UW_VH_1059_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635052;Start_range=80105879,80106272;End_range=80115058,80115480;submitter_variant_call_id=UW_VH_1059_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    81786790    81786790    14    81786790    81786790    2051:mobile_element_insertion:0    .    .    .    ID=10545247;Name=essv15078307;Alias=SVA_umary_SVA_613_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635085;submitter_variant_call_id=SVA_umary_SVA_613_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    82499114    82499114    14    82503326    82503326    2052:copy_number_loss:4212    .    .    .    ID=10549801;Name=essv15081759;Alias=UW_VH_13935_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635101;Start_range=82498728,82499115;End_range=82503327,82503768;submitter_variant_call_id=UW_VH_13935_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    84632739    84632739    14    84632739    84632739    2053:mobile_element_insertion:0    .    .    .    ID=10559791;Name=essv15086453;Alias=ALU_umary_ALU_10453_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635158;submitter_variant_call_id=ALU_umary_ALU_10453_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    85139128    85139128    14    85139626    85139626    2054:copy_number_loss:498    .    .    .    ID=10563778;Name=essv15087661;Alias=BI_GS_DEL1_B5_P2295_155_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635166;Start_range=85139129,85139130;End_range=85139627,85139628;submitter_variant_call_id=BI_GS_DEL1_B5_P2295_155_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    86630701    86630701    14    86630701    86630701    2055:mobile_element_insertion:0    .    .    .    ID=10568911;Name=essv15090802;Alias=ALU_umary_ALU_10464_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635223;submitter_variant_call_id=ALU_umary_ALU_10464_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    91185193    91185193    14    91185193    91185193    2056:mobile_element_insertion:0    .    .    .    ID=10575183;Name=essv15093992;Alias=ALU_umary_ALU_10488_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635317;submitter_variant_call_id=ALU_umary_ALU_10488_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    92125067    92125067    14    92125067    92125067    2057:mobile_element_insertion:0    .    .    .    ID=10580495;Name=essv15096363;Alias=ALU_umary_ALU_10493_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635326;submitter_variant_call_id=ALU_umary_ALU_10493_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    93830940    93830940    14    93830940    93830940    2058:mobile_element_insertion:0    .    .    .    ID=10588782;Name=essv15099452;Alias=ALU_umary_ALU_10496_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635359;submitter_variant_call_id=ALU_umary_ALU_10496_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    94235337    94235337    14    94235337    94235337    2059:indel:0    .    .    .    ID=10589748;Name=essv15101542;Alias=PHASE3_V1_SV_1665_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3635366;submitter_variant_call_id=PHASE3_V1_SV_1665_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    97151850    97151850    14    97151850    97151850    2060:mobile_element_insertion:0    .    .    .    ID=10594369;Name=essv15103628;Alias=ALU_umary_ALU_10511_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635427;submitter_variant_call_id=ALU_umary_ALU_10511_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    98494392    98494392    14    98494392    98494392    2061:mobile_element_insertion:0    .    .    .    ID=10598268;Name=essv15104993;Alias=ALU_umary_ALU_10518_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635456;submitter_variant_call_id=ALU_umary_ALU_10518_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    98783965    98783965    14    98785084    98785084    2062:copy_number_loss:1119    .    .    .    ID=10599541;Name=essv15106306;Alias=BI_GS_DEL1_B4_P2308_182_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635460;Start_range=98783966,98783967;End_range=98785085,98785086;submitter_variant_call_id=BI_GS_DEL1_B4_P2308_182_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    103279499    103279499    14    103279499    103279499    2063:indel:0    .    .    .    ID=10612269;Name=essv15111211;Alias=PHASE3_V1_SV_1673_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3635573;submitter_variant_call_id=PHASE3_V1_SV_1673_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    103598320    103598320    14    103598320    103598320    2064:indel:0    .    .    .    ID=10615373;Name=essv15113448;Alias=PHASE3_V1_SV_1674_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3635577;submitter_variant_call_id=PHASE3_V1_SV_1674_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    105417022    105417022    14    105418384    105418384    2065:copy_number_loss:1362    .    .    .    ID=10620876;Name=essv15115865;Alias=YL_CN_ITU_3106_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635632;Start_range=105416023,105417523;End_range=105417885,105419385;submitter_variant_call_id=YL_CN_ITU_3106_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106176283    106176283    14    106211722    106211722    2066:copy_number_loss:35439    .    .    .    ID=10635820;Name=essv15118162;Alias=EM_DL_DEL29878_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635656;Start_range=106176134,106176434;End_range=106211573,106211873;submitter_variant_call_id=EM_DL_DEL29878_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    106176651    106176651    14    106239356    106239356    2067:copy_number_loss:62705    .    .    .    ID=10636004;Name=essv15118281;Alias=BI_GS_DEL1_B1_P2316_65_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635657;Start_range=106176619,106176685;End_range=106239324,106239390;submitter_variant_call_id=BI_GS_DEL1_B1_P2316_65_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    106179241    106179241    14    106325748    106325748    2068:copy_number_loss:146507    .    .    .    ID=10636091;Name=essv15118431;Alias=YL_CN_CLM_2764_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635658;Start_range=106178242,106179742;End_range=106325249,106326749;submitter_variant_call_id=YL_CN_CLM_2764_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    106212057    106212057    14    106326486    106326486    2069:copy_number_loss:114429    .    .    .    ID=10636560;Name=essv15118961;Alias=YL_CN_LWK_3057_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635660;Start_range=106211058,106212558;End_range=106325987,106327487;submitter_variant_call_id=YL_CN_LWK_3057_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    106265241    106265241    14    106267875    106267875    2070:copy_number_loss:2634    .    .    .    ID=10637754;Name=essv15120056;Alias=SI_BD_13858_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635662;Start_range=106265192,106265292;End_range=106267826,106267926;submitter_variant_call_id=SI_BD_13858_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    106330473    106330473    14    106331760    106331760    2071:copy_number_loss:1287    .    .    .    ID=10638881;Name=essv15121419;Alias=BI_GS_DEL1_B3_P2316_88_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635666;Start_range=106330463,106330485;End_range=106331750,106331772;submitter_variant_call_id=BI_GS_DEL1_B3_P2316_88_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106331657    106331657    14    106346875    106346875    2072:copy_number_loss:15218    .    .    .    ID=10641368;Name=essv15123425;Alias=BI_GS_DEL1_B2_P2316_280_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635667;Start_range=106331624,106331692;End_range=106346842,106346910;submitter_variant_call_id=BI_GS_DEL1_B2_P2316_280_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106348972    106348972    14    106351877    106351877    2073:copy_number_loss:2905    .    .    .    ID=10645502;Name=essv15125427;Alias=BI_GS_DEL1_B2_P2316_283_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635668;Start_range=106348911,106349035;End_range=106351816,106351940;submitter_variant_call_id=BI_GS_DEL1_B2_P2316_283_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106349736    106349736    14    106350714    106350714    2074:copy_number_loss:978    .    .    .    ID=10646916;Name=essv15127424;Alias=BI_GS_DEL1_B3_P2316_120_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635669;Start_range=106349727,106349747;End_range=106350705,106350725;submitter_variant_call_id=BI_GS_DEL1_B3_P2316_120_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106350680    106350680    14    106351859    106351859    2075:copy_number_loss:1179    .    .    .    ID=10649450;Name=essv15129432;Alias=BI_GS_DEL1_B2_P2316_284_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635670;Start_range=106350659,106350703;End_range=106351838,106351882;submitter_variant_call_id=BI_GS_DEL1_B2_P2316_284_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
14    106788860    106788860    14    106788860    106788860    2076:mobile_element_insertion:0    .    .    .    ID=10654513;Name=essv15131879;Alias=ALU_umary_ALU_10538_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635673;submitter_variant_call_id=ALU_umary_ALU_10538_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
14    107174389    107174389    14    107174930    107174930    2077:copy_number_loss:541    .    .    .    ID=10659471;Name=essv15136825;Alias=UW_VH_3926_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635708;Start_range=107174161,107174390;End_range=107174931,107175189;submitter_variant_call_id=UW_VH_3926_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    20393077    20393077    15    20419532    20419532    2078:copy_number_gain:26455    .    .    .    ID=10666711;Name=essv15138960;Alias=DUP_gs_CNV_15_20393078_20419533_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3635727;submitter_variant_call_id=DUP_gs_CNV_15_20393078_20419533_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    20598941    20598941    15    20625796    20625796    2079:copy_number_gain:26855    .    .    .    ID=10671992;Name=essv15141783;Alias=DUP_gs_CNV_15_20598942_20625797_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3635731;submitter_variant_call_id=DUP_gs_CNV_15_20598942_20625797_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    20846720    20846720    15    20867074    20867074    2080:copy_number_gain:20354    .    .    .    ID=10681581;Name=essv15145440;Alias=DUP_gs_CNV_15_20846721_20867075_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3635739;submitter_variant_call_id=DUP_gs_CNV_15_20846721_20867075_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    21902634    21902634    15    21929977    21929977    2081:copy_number_gain:27343    .    .    .    ID=10691082;Name=essv15148836;Alias=DUP_gs_CNV_15_21902635_21929978_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3635746;submitter_variant_call_id=DUP_gs_CNV_15_21902635_21929978_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    22336903    22336903    15    22343963    22343963    2082:copy_number_gain:7060    .    .    .    ID=10714852;Name=essv15156410;Alias=DUP_gs_CNV_15_22336904_22343964_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3635759;submitter_variant_call_id=DUP_gs_CNV_15_22336904_22343964_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    22336903    22336903    15    22343963    22343963    2083:copy_number_loss:7060    .    .    .    ID=10716120;Name=essv15155086;Alias=DUP_gs_CNV_15_22336904_22343964_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635758;submitter_variant_call_id=DUP_gs_CNV_15_22336904_22343964_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    22769073    22769073    15    22769073    22769073    2084:mobile_element_insertion:0    .    .    .    ID=10736320;Name=essv15175683;Alias=ALU_umary_ALU_10547_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635810;submitter_variant_call_id=ALU_umary_ALU_10547_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    23671394    23671394    15    23674749    23674749    2085:copy_number_loss:3355    .    .    .    ID=10745191;Name=essv15178778;Alias=YL_CN_STU_3234_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635841;Start_range=23670395,23671895;End_range=23674250,23675750;submitter_variant_call_id=YL_CN_STU_3234_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    23743560    23743560    15    23743560    23743560    2086:mobile_element_insertion:0    .    .    .    ID=10747450;Name=essv15181103;Alias=L1_umary_LINE1_2621_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635843;submitter_variant_call_id=L1_umary_LINE1_2621_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    24591238    24591238    15    24591238    24591238    2087:mobile_element_insertion:0    .    .    .    ID=10753306;Name=essv15183184;Alias=ALU_umary_ALU_10560_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635885;submitter_variant_call_id=ALU_umary_ALU_10560_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    25931434    25931434    15    25932383    25932383    2088:copy_number_loss:949    .    .    .    ID=10769018;Name=essv15190050;Alias=UW_VH_25147_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635933;Start_range=25931094,25931435;End_range=25932384,25932786;submitter_variant_call_id=UW_VH_25147_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    25931803    25931803    15    25932021    25932021    2089:copy_number_loss:218    .    .    .    ID=10771022;Name=essv15191966;Alias=BI_GS_DEL1_B1_P2343_807_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3635934;Start_range=25931799,25931809;End_range=25932017,25932027;submitter_variant_call_id=BI_GS_DEL1_B1_P2343_807_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    26141246    26141246    15    26141246    26141246    2090:mobile_element_insertion:0    .    .    .    ID=10771940;Name=essv15193091;Alias=ALU_umary_ALU_10574_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635938;submitter_variant_call_id=ALU_umary_ALU_10574_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    27765793    27765793    15    27765793    27765793    2091:mobile_element_insertion:0    .    .    .    ID=10779896;Name=essv15196771;Alias=ALU_umary_ALU_10585_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635978;submitter_variant_call_id=ALU_umary_ALU_10585_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    28175803    28175803    15    28175803    28175803    2092:mobile_element_insertion:0    .    .    .    ID=10782656;Name=essv15198380;Alias=L1_umary_LINE1_2628_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3635985;submitter_variant_call_id=L1_umary_LINE1_2628_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    28701267    28701267    15    28709131    28709131    2093:copy_number_gain:7864    .    .    .    ID=10789363;Name=essv15201680;Alias=DUP_gs_CNV_15_28701268_28709132_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3635994;submitter_variant_call_id=DUP_gs_CNV_15_28701268_28709132_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    31898856    31898856    15    32030944    32030944    2094:copy_number_gain:132088    .    .    .    ID=10797571;Name=essv15205905;Alias=DUP_uwash_chr15_31898857_32030945_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3636056;submitter_variant_call_id=DUP_uwash_chr15_31898857_32030945_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    34031854    34031854    15    34031854    34031854    2095:mobile_element_insertion:0    .    .    .    ID=10805272;Name=essv15208651;Alias=L1_umary_LINE1_2630_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636087;submitter_variant_call_id=L1_umary_LINE1_2630_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    37544733    37544733    15    37544733    37544733    2096:indel:0    .    .    .    ID=10825119;Name=essv15218781;Alias=PHASE3_V1_SV_1685_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636170;submitter_variant_call_id=PHASE3_V1_SV_1685_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    37707889    37707889    15    37707889    37707889    2097:mobile_element_insertion:0    .    .    .    ID=10826454;Name=essv15220079;Alias=L1_umary_LINE1_2634_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636174;submitter_variant_call_id=L1_umary_LINE1_2634_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    38769444    38769444    15    38769444    38769444    2098:mobile_element_insertion:0    .    .    .    ID=10828527;Name=essv15221092;Alias=ALU_umary_ALU_10642_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636192;submitter_variant_call_id=ALU_umary_ALU_10642_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    39372402    39372402    15    39373463    39373463    2099:copy_number_loss:1061    .    .    .    ID=10831089;Name=essv15222485;Alias=UW_VH_13203_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636205;Start_range=39371801,39372403;End_range=39373464,39373931;submitter_variant_call_id=UW_VH_13203_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    39691604    39691604    15    39691604    39691604    2100:mobile_element_insertion:0    .    .    .    ID=10838176;Name=essv15224264;Alias=ALU_umary_ALU_10647_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636211;submitter_variant_call_id=ALU_umary_ALU_10647_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    39744384    39744384    15    39744851    39744851    2101:copy_number_loss:467    .    .    .    ID=10838738;Name=essv15226273;Alias=BI_GS_DEL1_B5_P2357_1030_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636212;Start_range=39744385,39744385;End_range=39744852,39744852;submitter_variant_call_id=BI_GS_DEL1_B5_P2357_1030_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    41585707    41585707    15    41585707    41585707    2102:indel:0    .    .    .    ID=10847292;Name=essv15230444;Alias=PHASE3_V1_SV_1690_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636240;submitter_variant_call_id=PHASE3_V1_SV_1690_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    45569911    45569911    15    45569911    45569911    2103:mobile_element_insertion:0    .    .    .    ID=10856428;Name=essv15234716;Alias=ALU_umary_ALU_10670_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636338;submitter_variant_call_id=ALU_umary_ALU_10670_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    46126005    46126005    15    46126005    46126005    2104:mobile_element_insertion:0    .    .    .    ID=10861582;Name=essv15236725;Alias=ALU_umary_ALU_10674_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636349;submitter_variant_call_id=ALU_umary_ALU_10674_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    47236486    47236486    15    47236486    47236486    2105:indel:0    .    .    .    ID=10870298;Name=essv15241073;Alias=PHASE3_V1_SV_1698_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636380;submitter_variant_call_id=PHASE3_V1_SV_1698_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    50153222    50153222    15    50153222    50153222    2106:indel:0    .    .    .    ID=10879727;Name=essv15246386;Alias=PHASE3_V1_SV_1701_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636433;submitter_variant_call_id=PHASE3_V1_SV_1701_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    56833936    56833936    15    56833936    56833936    2107:mobile_element_insertion:0    .    .    .    ID=10904535;Name=essv15258458;Alias=ALU_umary_ALU_10738_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636594;submitter_variant_call_id=ALU_umary_ALU_10738_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    60657258    60657258    15    60657258    60657258    2108:mobile_element_insertion:0    .    .    .    ID=10911653;Name=essv15262268;Alias=ALU_umary_ALU_10752_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636662;submitter_variant_call_id=ALU_umary_ALU_10752_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    61216543    61216543    15    61216543    61216543    2109:mobile_element_insertion:0    .    .    .    ID=10915077;Name=essv15263837;Alias=ALU_umary_ALU_10760_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636676;submitter_variant_call_id=ALU_umary_ALU_10760_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    63287085    63287085    15    63287085    63287085    2110:mobile_element_insertion:0    .    .    .    ID=10927002;Name=essv15269038;Alias=ALU_umary_ALU_10769_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636710;submitter_variant_call_id=ALU_umary_ALU_10769_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    63374598    63374598    15    63374598    63374598    2111:mobile_element_insertion:0    .    .    .    ID=10928684;Name=essv15270464;Alias=SVA_umary_SVA_637_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636711;submitter_variant_call_id=SVA_umary_SVA_637_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    66513959    66513959    15    66513959    66513959    2112:mobile_element_insertion:0    .    .    .    ID=10933871;Name=essv15273129;Alias=ALU_umary_ALU_10778_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636766;submitter_variant_call_id=ALU_umary_ALU_10778_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    67294859    67294859    15    67294859    67294859    2113:mobile_element_insertion:0    .    .    .    ID=10937799;Name=essv15274990;Alias=ALU_umary_ALU_10781_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636775;submitter_variant_call_id=ALU_umary_ALU_10781_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    68063458    68063458    15    68063458    68063458    2114:indel:0    .    .    .    ID=10944858;Name=essv15278519;Alias=PHASE3_V1_SV_1714_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636794;submitter_variant_call_id=PHASE3_V1_SV_1714_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    70408636    70408636    15    70408636    70408636    2115:mobile_element_insertion:0    .    .    .    ID=10951321;Name=essv15281543;Alias=ALU_umary_ALU_10797_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636830;submitter_variant_call_id=ALU_umary_ALU_10797_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    70747314    70747314    15    70747314    70747314    2116:mobile_element_insertion:0    .    .    .    ID=10954411;Name=essv15282834;Alias=ALU_umary_ALU_10800_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636836;submitter_variant_call_id=ALU_umary_ALU_10800_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    70839578    70839578    15    70839578    70839578    2117:mobile_element_insertion:0    .    .    .    ID=10955332;Name=essv15283786;Alias=SVA_umary_SVA_640_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636838;submitter_variant_call_id=SVA_umary_SVA_640_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    71708613    71708613    15    71713684    71713684    2118:copy_number_loss:5071    .    .    .    ID=10961831;Name=essv15286531;Alias=UW_VH_3789_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636856;Start_range=71708140,71708614;End_range=71713685,71714105;submitter_variant_call_id=UW_VH_3789_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    72385964    72385964    15    72388157    72388157    2119:copy_number_loss:2193    .    .    .    ID=10967403;Name=essv15289119;Alias=EM_DL_DEL33633_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636869;Start_range=72385815,72386115;End_range=72388008,72388308;submitter_variant_call_id=EM_DL_DEL33633_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    72639550    72639550    15    72639550    72639550    2120:mobile_element_insertion:0    .    .    .    ID=10969751;Name=essv15290998;Alias=ALU_umary_ALU_10809_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636873;submitter_variant_call_id=ALU_umary_ALU_10809_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    73983318    73983318    15    73983318    73983318    2121:mobile_element_insertion:0    .    .    .    ID=10972698;Name=essv15292320;Alias=ALU_umary_ALU_10812_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636891;submitter_variant_call_id=ALU_umary_ALU_10812_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    76372645    76372645    15    76372645    76372645    2122:indel:0    .    .    .    ID=10978424;Name=essv15295019;Alias=PHASE3_V1_SV_1721_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3636936;submitter_variant_call_id=PHASE3_V1_SV_1721_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    76884545    76884545    15    76895793    76895793    2123:copy_number_loss:11248    .    .    .    ID=10983577;Name=essv15297193;Alias=DUP_gs_CNV_15_76884546_76895794_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636945;submitter_variant_call_id=DUP_gs_CNV_15_76884546_76895794_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    77092500    77092500    15    77092500    77092500    2124:mobile_element_insertion:0    .    .    .    ID=10985917;Name=essv15298234;Alias=ALU_umary_ALU_10821_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3636951;submitter_variant_call_id=ALU_umary_ALU_10821_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    77330748    77330748    15    77332718    77332718    2125:copy_number_loss:1970    .    .    .    ID=10986860;Name=essv15299567;Alias=BI_GS_DEL1_B4_P2395_67_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3636957;Start_range=77330748,77330751;End_range=77332718,77332721;submitter_variant_call_id=BI_GS_DEL1_B4_P2395_67_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    79795884    79795884    15    79795884    79795884    2126:mobile_element_insertion:0    .    .    .    ID=10996490;Name=essv15304119;Alias=ALU_umary_ALU_10833_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637000;submitter_variant_call_id=ALU_umary_ALU_10833_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    81392596    81392596    15    81392596    81392596    2127:mobile_element_insertion:0    .    .    .    ID=11000603;Name=essv15306464;Alias=ALU_umary_ALU_10841_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637030;submitter_variant_call_id=ALU_umary_ALU_10841_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    82553297    82553297    15    82610076    82610076    2128:copy_number_gain:56779    .    .    .    ID=11006148;Name=essv15309215;Alias=DUP_uwash_chr15_82553298_82610077_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3637054;submitter_variant_call_id=DUP_uwash_chr15_82553298_82610077_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    82565778    82565778    15    82567875    82567875    2129:copy_number_loss:2097    .    .    .    ID=11007924;Name=essv15309987;Alias=UW_VH_3840_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637056;Start_range=82565573,82565779;End_range=82567876,82568121;submitter_variant_call_id=UW_VH_3840_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    83551622    83551622    15    83557674    83557674    2130:copy_number_loss:6052    .    .    .    ID=11010942;Name=essv15311517;Alias=BI_GS_DEL1_B1_P2401_259_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637064;Start_range=83551623,83551623;End_range=83557675,83557675;submitter_variant_call_id=BI_GS_DEL1_B1_P2401_259_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    84541433    84541433    15    84543837    84543837    2131:copy_number_loss:2404    .    .    .    ID=11014728;Name=essv15313148;Alias=BI_GS_DEL1_B1_P2402_457_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637078;Start_range=84541434,84541434;End_range=84543838,84543838;submitter_variant_call_id=BI_GS_DEL1_B1_P2402_457_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    84676324    84676324    15    84676324    84676324    2132:mobile_element_insertion:0    .    .    .    ID=11015224;Name=essv15313583;Alias=ALU_umary_ALU_10850_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637083;submitter_variant_call_id=ALU_umary_ALU_10850_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    85815319    85815319    15    85815319    85815319    2133:mobile_element_insertion:0    .    .    .    ID=11018048;Name=essv15314180;Alias=ALU_umary_ALU_10852_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637109;submitter_variant_call_id=ALU_umary_ALU_10852_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    86057006    86057006    15    86059201    86059201    2134:copy_number_loss:2195    .    .    .    ID=11018911;Name=essv15315015;Alias=BI_GS_DEL1_B2_P2404_39_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637116;Start_range=86057007,86057007;End_range=86059202,86059202;submitter_variant_call_id=BI_GS_DEL1_B2_P2404_39_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    95165029    95165029    15    95165029    95165029    2135:mobile_element_insertion:0    .    .    .    ID=11038126;Name=essv15324024;Alias=ALU_umary_ALU_10900_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637319;submitter_variant_call_id=ALU_umary_ALU_10900_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    97585947    97585947    15    97585947    97585947    2136:mobile_element_insertion:0    .    .    .    ID=11052761;Name=essv15330988;Alias=ALU_umary_ALU_10907_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637362;submitter_variant_call_id=ALU_umary_ALU_10907_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    97770233    97770233    15    97770233    97770233    2137:mobile_element_insertion:0    .    .    .    ID=11053989;Name=essv15332577;Alias=ALU_umary_ALU_10909_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637370;submitter_variant_call_id=ALU_umary_ALU_10909_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    98842311    98842311    15    98843807    98843807    2138:copy_number_loss:1496    .    .    .    ID=11063785;Name=essv15336628;Alias=UW_VH_23924_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637402;Start_range=98841999,98842312;End_range=98843808,98844219;submitter_variant_call_id=UW_VH_23924_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    99574505    99574505    15    99575632    99575632    2139:copy_number_loss:1127    .    .    .    ID=11073777;Name=essv15340465;Alias=BI_GS_DEL1_B1_P2417_554_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637415;Start_range=99574506,99574506;End_range=99575633,99575633;submitter_variant_call_id=BI_GS_DEL1_B1_P2417_554_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    100810992    100810992    15    100810992    100810992    2140:mobile_element_insertion:0    .    .    .    ID=11089765;Name=essv15348372;Alias=ALU_umary_ALU_10921_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637471;submitter_variant_call_id=ALU_umary_ALU_10921_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    100812816    100812816    15    100812816    100812816    2141:mobile_element_insertion:0    .    .    .    ID=11092276;Name=essv15350302;Alias=ALU_umary_ALU_10922_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637472;submitter_variant_call_id=ALU_umary_ALU_10922_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    100898979    100898979    15    100898979    100898979    2142:mobile_element_insertion:0    .    .    .    ID=11094461;Name=essv15351769;Alias=ALU_umary_ALU_10923_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637475;submitter_variant_call_id=ALU_umary_ALU_10923_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
15    101200998    101200998    15    101200998    101200998    2143:indel:0    .    .    .    ID=11095598;Name=essv15352728;Alias=PHASE3_V1_SV_1735_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3637484;submitter_variant_call_id=PHASE3_V1_SV_1735_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
15    101341488    101341488    15    101342373    101342373    2144:copy_number_loss:885    .    .    .    ID=11096317;Name=essv15353584;Alias=BI_GS_DEL1_B5_P2419_438_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637487;Start_range=101341489,101341489;End_range=101342374,101342374;submitter_variant_call_id=BI_GS_DEL1_B5_P2419_438_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    998831    998831    16    1000717    1000717    2145:copy_number_loss:1886    .    .    .    ID=11105827;Name=essv15358561;Alias=UW_VH_24834_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637599;Start_range=998647,998832;End_range=1000718,1001162;submitter_variant_call_id=UW_VH_24834_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    1507458    1507458    16    1507458    1507458    2146:indel:0    .    .    .    ID=11112866;Name=essv15361560;Alias=PHASE3_V1_SV_1740_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3637618;submitter_variant_call_id=PHASE3_V1_SV_1740_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    6793825    6793825    16    6793825    6793825    2147:mobile_element_insertion:0    .    .    .    ID=11119951;Name=essv15365311;Alias=L1_umary_LINE1_2688_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637761;submitter_variant_call_id=L1_umary_LINE1_2688_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    7541394    7541394    16    7541394    7541394    2148:mobile_element_insertion:0    .    .    .    ID=11125143;Name=essv15367710;Alias=ALU_umary_ALU_10945_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637802;submitter_variant_call_id=ALU_umary_ALU_10945_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    10924957    10924957    16    10925625    10925625    2149:copy_number_loss:668    .    .    .    ID=11137822;Name=essv15374093;Alias=BI_GS_DEL1_B5_P2431_1092_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637916;Start_range=10924946,10924971;End_range=10925614,10925639;submitter_variant_call_id=BI_GS_DEL1_B5_P2431_1092_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    11086407    11086407    16    11086407    11086407    2150:mobile_element_insertion:0    .    .    .    ID=11139690;Name=essv15374857;Alias=ALU_umary_ALU_10963_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3637919;submitter_variant_call_id=ALU_umary_ALU_10963_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    11683731    11683731    16    11685290    11685290    2151:copy_number_loss:1559    .    .    .    ID=11142398;Name=essv15376504;Alias=BI_GS_DEL1_B1_P2432_635_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637931;Start_range=11683732,11683732;End_range=11685291,11685291;submitter_variant_call_id=BI_GS_DEL1_B1_P2432_635_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    13294445    13294445    16    13296480    13296480    2152:copy_number_loss:2035    .    .    .    ID=11146075;Name=essv15378251;Alias=BI_GS_DEL1_B4_P2434_65_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3637976;Start_range=13294444,13294449;End_range=13296479,13296484;submitter_variant_call_id=BI_GS_DEL1_B4_P2434_65_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    15059675    15059675    16    15076874    15076874    2153:copy_number_gain:17199    .    .    .    ID=11156228;Name=essv15380810;Alias=DUP_gs_CNV_16_15059676_15076875_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638013;submitter_variant_call_id=DUP_gs_CNV_16_15059676_15076875_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    15080266    15080266    16    15105112    15105112    2154:copy_number_gain:24846    .    .    .    ID=11157427;Name=essv15382843;Alias=DUP_gs_CNV_16_15080267_15105113_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638015;submitter_variant_call_id=DUP_gs_CNV_16_15080267_15105113_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    15099302    15099302    16    15123497    15123497    2155:copy_number_gain:24195    .    .    .    ID=11159664;Name=essv15384876;Alias=DUP_gs_CNV_16_15099303_15123498_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638017;submitter_variant_call_id=DUP_gs_CNV_16_15099303_15123498_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    16742148    16742148    16    16888528    16888528    2156:copy_number_gain:146380    .    .    .    ID=11167385;Name=essv15388156;Alias=DUP_uwash_chr16_16742149_16888529_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638059;submitter_variant_call_id=DUP_uwash_chr16_16742149_16888529_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    17226338    17226338    16    17226338    17226338    2157:indel:0    .    .    .    ID=11170933;Name=essv15390313;Alias=PHASE3_V1_SV_1751_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638071;submitter_variant_call_id=PHASE3_V1_SV_1751_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    17564778    17564778    16    17564778    17564778    2158:indel:0    .    .    .    ID=11176122;Name=essv15392693;Alias=PHASE3_V1_SV_1753_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638082;submitter_variant_call_id=PHASE3_V1_SV_1753_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    18150064    18150064    16    18241261    18241261    2159:copy_number_gain:91197    .    .    .    ID=11184000;Name=essv15396606;Alias=DUP_uwash_chr16_18150065_18241262_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638104;submitter_variant_call_id=DUP_uwash_chr16_18150065_18241262_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    19945550    19945550    16    19967584    19967584    2160:copy_number_loss:22034    .    .    .    ID=11187597;Name=essv15398769;Alias=BI_GS_DEL1_B5_P2440_1086_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638126;Start_range=19945551,19945551;End_range=19967585,19967585;submitter_variant_call_id=BI_GS_DEL1_B5_P2440_1086_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    19959364    19959364    16    19966087    19966087    2161:copy_number_loss:6723    .    .    .    ID=11188420;Name=essv15399086;Alias=BI_GS_DEL1_B5_P2440_1101_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638127;Start_range=19959323,19959407;End_range=19966046,19966130;submitter_variant_call_id=BI_GS_DEL1_B5_P2440_1101_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    20221624    20221624    16    20221624    20221624    2162:indel:0    .    .    .    ID=11192441;Name=essv15401520;Alias=PHASE3_V1_SV_1755_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638136;submitter_variant_call_id=PHASE3_V1_SV_1755_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    20530724    20530724    16    20619855    20619855    2163:copy_number_gain:89131    .    .    .    ID=11199231;Name=essv15404194;Alias=DUP_uwash_chr16_20530724_20619856_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638143;submitter_variant_call_id=DUP_uwash_chr16_20530724_20619856_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    20545136    20545136    16    20554002    20554002    2164:copy_number_loss:8866    .    .    .    ID=11200024;Name=essv15404952;Alias=DUP_gs_CNV_16_20545137_20554003_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638145;submitter_variant_call_id=DUP_gs_CNV_16_20545137_20554003_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    21518345    21518345    16    21544881    21544881    2165:copy_number_gain:26536    .    .    .    ID=11207202;Name=essv15408173;Alias=DUP_gs_CNV_16_21518346_21544882_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638169;submitter_variant_call_id=DUP_gs_CNV_16_21518346_21544882_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    21541684    21541684    16    21569414    21569414    2166:copy_number_gain:27730    .    .    .    ID=11211046;Name=essv15410649;Alias=DUP_gs_CNV_16_21541685_21569415_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638174;submitter_variant_call_id=DUP_gs_CNV_16_21541685_21569415_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    21573320    21573320    16    21580381    21580381    2167:copy_number_gain:7061    .    .    .    ID=11217105;Name=essv15413099;Alias=DUP_gs_CNV_16_21573321_21580382_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638178;submitter_variant_call_id=DUP_gs_CNV_16_21573321_21580382_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    21588290    21588290    16    21593313    21593313    2168:copy_number_gain:5023    .    .    .    ID=11222084;Name=essv15415579;Alias=DUP_gs_CNV_16_21588291_21593314_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638183;submitter_variant_call_id=DUP_gs_CNV_16_21588291_21593314_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    22611651    22611651    16    22662019    22662019    2169:copy_number_gain:50368    .    .    .    ID=11226382;Name=essv15418112;Alias=DUP_gs_CNV_16_22611652_22662020_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638208;submitter_variant_call_id=DUP_gs_CNV_16_22611652_22662020_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    22623099    22623099    16    22783756    22783756    2170:copy_number_gain:160657    .    .    .    ID=11231259;Name=essv15420609;Alias=DUP_uwash_chr16_22623100_22783757_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638212;submitter_variant_call_id=DUP_uwash_chr16_22623100_22783757_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    22650741    22650741    16    22695700    22695700    2171:copy_number_gain:44959    .    .    .    ID=11235539;Name=essv15423088;Alias=DUP_gs_CNV_16_22650742_22695701_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638215;submitter_variant_call_id=DUP_gs_CNV_16_22650742_22695701_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    23047726    23047726    16    23049532    23049532    2172:copy_number_loss:1806    .    .    .    ID=11243284;Name=essv15426188;Alias=UW_VH_10999_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638227;Start_range=23047242,23047727;End_range=23049533,23050035;submitter_variant_call_id=UW_VH_10999_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    23865299    23865299    16    23865299    23865299    2173:mobile_element_insertion:0    .    .    .    ID=11249135;Name=essv15429457;Alias=ALU_umary_ALU_11003_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638239;submitter_variant_call_id=ALU_umary_ALU_11003_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    24327580    24327580    16    24327580    24327580    2174:mobile_element_insertion:0    .    .    .    ID=11251850;Name=essv15430623;Alias=ALU_umary_ALU_11004_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638246;submitter_variant_call_id=ALU_umary_ALU_11004_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    25340108    25340108    16    25343127    25343127    2175:copy_number_loss:3019    .    .    .    ID=11255920;Name=essv15432914;Alias=BI_GS_DEL1_B1_P2446_269_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638274;Start_range=25340109,25340109;End_range=25343128,25343128;submitter_variant_call_id=BI_GS_DEL1_B1_P2446_269_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    25639365    25639365    16    25640143    25640143    2176:copy_number_loss:778    .    .    .    ID=11259208;Name=essv15434290;Alias=BI_GS_DEL1_B1_P2446_538_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638278;Start_range=25639366,25639366;End_range=25640144,25640144;submitter_variant_call_id=BI_GS_DEL1_B1_P2446_538_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    25721774    25721774    16    25721774    25721774    2177:indel:0    .    .    .    ID=11263437;Name=essv15436185;Alias=PHASE3_V1_SV_1759_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638280;submitter_variant_call_id=PHASE3_V1_SV_1759_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    26824957    26824957    16    26824957    26824957    2178:indel:0    .    .    .    ID=11267175;Name=essv15438514;Alias=PHASE3_V1_SV_1762_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638306;submitter_variant_call_id=PHASE3_V1_SV_1762_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    32328770    32328770    16    32370967    32370967    2179:copy_number_gain:42197    .    .    .    ID=11277542;Name=essv15443601;Alias=DUP_gs_CNV_16_32328771_32370968_A3_NA12878;variant_call_so_id=SO:0001742;parent=esv3638418;submitter_variant_call_id=DUP_gs_CNV_16_32328771_32370968_A3_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    32366480    32366480    16    32410671    32410671    2180:copy_number_gain:44191    .    .    .    ID=11282222;Name=essv15445785;Alias=DUP_gs_CNV_16_32366481_32410672_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638423;submitter_variant_call_id=DUP_gs_CNV_16_32366481_32410672_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    32418982    32418982    16    32469916    32469916    2181:copy_number_gain:50934    .    .    .    ID=11286882;Name=essv15448199;Alias=DUP_gs_CNV_16_32418983_32469917_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638428;submitter_variant_call_id=DUP_gs_CNV_16_32418983_32469917_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    32611028    32611028    16    32642737    32642737    2182:copy_number_gain:31709    .    .    .    ID=11296729;Name=essv15452650;Alias=DUP_gs_CNV_16_32611029_32642738_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638439;submitter_variant_call_id=DUP_gs_CNV_16_32611029_32642738_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    32831658    32831658    16    32863934    32863934    2183:copy_number_gain:32276    .    .    .    ID=11301492;Name=essv15455085;Alias=DUP_gs_CNV_16_32831659_32863935_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638444;submitter_variant_call_id=DUP_gs_CNV_16_32831659_32863935_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    33446162    33446162    16    33480260    33480260    2184:copy_number_gain:34098    .    .    .    ID=11304950;Name=essv15457872;Alias=DUP_gs_CNV_16_33446163_33480261_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638454;submitter_variant_call_id=DUP_gs_CNV_16_33446163_33480261_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    33467708    33467708    16    33467708    33467708    2185:mobile_element_insertion:0    .    .    .    ID=11305708;Name=essv15458682;Alias=ALU_umary_ALU_11021_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638457;submitter_variant_call_id=ALU_umary_ALU_11021_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    33470754    33470754    16    33495605    33495605    2186:copy_number_gain:24851    .    .    .    ID=11306892;Name=essv15460198;Alias=DUP_gs_CNV_16_33470755_33495606_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638459;submitter_variant_call_id=DUP_gs_CNV_16_33470755_33495606_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    33484520    33484520    16    33543752    33543752    2187:copy_number_gain:59232    .    .    .    ID=11309441;Name=essv15462408;Alias=DUP_gs_CNV_16_33484521_33543753_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638463;submitter_variant_call_id=DUP_gs_CNV_16_33484521_33543753_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    33524564    33524564    16    33570783    33570783    2188:copy_number_gain:46219    .    .    .    ID=11311657;Name=essv15464626;Alias=DUP_gs_CNV_16_33524565_33570784_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638467;submitter_variant_call_id=DUP_gs_CNV_16_33524565_33570784_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    33588531    33588531    16    33626593    33626593    2189:copy_number_gain:38062    .    .    .    ID=11314453;Name=essv15467138;Alias=DUP_gs_CNV_16_33588532_33626594_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638474;submitter_variant_call_id=DUP_gs_CNV_16_33588532_33626594_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    34457084    34457084    16    34712398    34712398    2190:copy_number_gain:255314    .    .    .    ID=11328114;Name=essv15468820;Alias=DUP_gs_CNV_16_34457085_34712399_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3638500;submitter_variant_call_id=DUP_gs_CNV_16_34457085_34712399_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    34971846    34971846    16    35148880    35148880    2191:copy_number_gain:177034    .    .    .    ID=11329174;Name=essv15470748;Alias=DUP_uwash_chr16_34971847_35148881_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638514;submitter_variant_call_id=DUP_uwash_chr16_34971847_35148881_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    51513081    51513081    16    51513081    51513081    2192:indel:0    .    .    .    ID=11345466;Name=essv15477372;Alias=PHASE3_V1_SV_1767_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638612;submitter_variant_call_id=PHASE3_V1_SV_1767_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    53874980    53874980    16    53874980    53874980    2193:mobile_element_insertion:0    .    .    .    ID=11351977;Name=essv15480145;Alias=ALU_umary_ALU_11050_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638660;submitter_variant_call_id=ALU_umary_ALU_11050_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    55292018    55292018    16    55292018    55292018    2194:mobile_element_insertion:0    .    .    .    ID=11353748;Name=essv15481284;Alias=L1_umary_LINE1_2719_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638681;submitter_variant_call_id=L1_umary_LINE1_2719_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    56075107    56075107    16    56075107    56075107    2195:mobile_element_insertion:0    .    .    .    ID=11357564;Name=essv15483182;Alias=ALU_umary_ALU_11055_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638693;submitter_variant_call_id=ALU_umary_ALU_11055_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    57326357    57326357    16    57328152    57328152    2196:copy_number_loss:1795    .    .    .    ID=11360141;Name=essv15484283;Alias=UW_VH_1894_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638709;Start_range=57326027,57326358;End_range=57328153,57328601;submitter_variant_call_id=UW_VH_1894_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    57725353    57725353    16    57727832    57727832    2197:copy_number_loss:2479    .    .    .    ID=11362661;Name=essv15485060;Alias=BI_GS_DEL1_B1_P2478_619_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638713;Start_range=57725352,57725356;End_range=57727831,57727835;submitter_variant_call_id=BI_GS_DEL1_B1_P2478_619_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    59088379    59088379    16    59088379    59088379    2198:indel:0    .    .    .    ID=11373863;Name=essv15491511;Alias=PHASE3_V1_SV_1776_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638738;submitter_variant_call_id=PHASE3_V1_SV_1776_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    60041161    60041161    16    60041161    60041161    2199:mobile_element_insertion:0    .    .    .    ID=11380273;Name=essv15494198;Alias=ALU_umary_ALU_11070_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638756;submitter_variant_call_id=ALU_umary_ALU_11070_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    62544333    62544333    16    62550662    62550662    2200:copy_number_loss:6329    .    .    .    ID=11384813;Name=essv15496613;Alias=BI_GS_DEL1_B1_P2483_466_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3638796;Start_range=62544334,62544334;End_range=62550663,62550663;submitter_variant_call_id=BI_GS_DEL1_B1_P2483_466_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    63063868    63063868    16    63063868    63063868    2201:indel:0    .    .    .    ID=11387920;Name=essv15498005;Alias=PHASE3_V1_SV_1778_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638807;submitter_variant_call_id=PHASE3_V1_SV_1778_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    69359262    69359262    16    69359262    69359262    2202:indel:0    .    .    .    ID=11397266;Name=essv15502667;Alias=PHASE3_V1_SV_1784_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3638922;submitter_variant_call_id=PHASE3_V1_SV_1784_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    69395847    69395847    16    69395847    69395847    2203:mobile_element_insertion:0    .    .    .    ID=11398578;Name=essv15503506;Alias=ALU_umary_ALU_11101_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638923;submitter_variant_call_id=ALU_umary_ALU_11101_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    70848114    70848114    16    71104697    71104697    2204:copy_number_gain:256583    .    .    .    ID=11407278;Name=essv15507823;Alias=DUP_uwash_chr16_70848115_71104698_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638958;submitter_variant_call_id=DUP_uwash_chr16_70848115_71104698_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    71056861    71056861    16    71206509    71206509    2205:copy_number_gain:149648    .    .    .    ID=11412525;Name=essv15510544;Alias=DUP_uwash_chr16_71056861_71206510_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3638963;submitter_variant_call_id=DUP_uwash_chr16_71056861_71206510_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    71131363    71131363    16    71131363    71131363    2206:mobile_element_insertion:0    .    .    .    ID=11416259;Name=essv15512051;Alias=ALU_umary_ALU_11106_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3638965;submitter_variant_call_id=ALU_umary_ALU_11106_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    74845021    74845021    16    74845021    74845021    2207:mobile_element_insertion:0    .    .    .    ID=11431123;Name=essv15519707;Alias=SVA_umary_SVA_672_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639074;submitter_variant_call_id=SVA_umary_SVA_672_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    75429830    75429830    16    75430672    75430672    2208:copy_number_loss:842    .    .    .    ID=11436237;Name=essv15521750;Alias=EM_DL_DEL10401922_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639091;Start_range=75429681,75429981;End_range=75430523,75430823;submitter_variant_call_id=EM_DL_DEL10401922_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    75503333    75503333    16    75503333    75503333    2209:mobile_element_insertion:0    .    .    .    ID=11438008;Name=essv15523008;Alias=SVA_umary_SVA_673_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639092;submitter_variant_call_id=SVA_umary_SVA_673_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    76539137    76539137    16    76544020    76544020    2210:copy_number_loss:4883    .    .    .    ID=11444704;Name=essv15526026;Alias=UW_VH_1123_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639126;Start_range=76538609,76539138;End_range=76544021,76544547;submitter_variant_call_id=UW_VH_1123_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    78171652    78171652    16    78172363    78172363    2211:copy_number_loss:711    .    .    .    ID=11449527;Name=essv15528642;Alias=BI_GS_DEL1_B1_P2499_166_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639193;Start_range=78171649,78171658;End_range=78172360,78172369;submitter_variant_call_id=BI_GS_DEL1_B1_P2499_166_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    78876664    78876664    16    78877563    78877563    2212:copy_number_loss:899    .    .    .    ID=11452990;Name=essv15530399;Alias=BI_GS_DEL1_B4_P2499_184_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639229;Start_range=78876665,78876665;End_range=78877564,78877564;submitter_variant_call_id=BI_GS_DEL1_B4_P2499_184_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    80217438    80217438    16    80217438    80217438    2213:mobile_element_insertion:0    .    .    .    ID=11459705;Name=essv15533757;Alias=ALU_umary_ALU_11141_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639259;submitter_variant_call_id=ALU_umary_ALU_11141_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    81173807    81173807    16    81174323    81174323    2214:copy_number_loss:516    .    .    .    ID=11467163;Name=essv15537125;Alias=BI_GS_DEL1_B4_P2502_32_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639316;Start_range=81173808,81173808;End_range=81174324,81174324;submitter_variant_call_id=BI_GS_DEL1_B4_P2502_32_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    81278021    81278021    16    81278021    81278021    2215:mobile_element_insertion:0    .    .    .    ID=11468113;Name=essv15537801;Alias=ALU_umary_ALU_11148_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639326;submitter_variant_call_id=ALU_umary_ALU_11148_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    82164196    82164196    16    82164443    82164443    2216:copy_number_loss:247    .    .    .    ID=11473491;Name=essv15539627;Alias=BI_GS_DEL1_B3_P2503_8_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639350;Start_range=82164197,82164197;End_range=82164444,82164444;submitter_variant_call_id=BI_GS_DEL1_B3_P2503_8_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    82164689    82164689    16    82164689    82164689    2217:mobile_element_insertion:0    .    .    .    ID=11476600;Name=essv15541718;Alias=ALU_umary_ALU_11151_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639352;submitter_variant_call_id=ALU_umary_ALU_11151_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    84501431    84501431    16    84504121    84504121    2218:copy_number_loss:2690    .    .    .    ID=11485857;Name=essv15546566;Alias=UW_VH_15670_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639428;Start_range=84501051,84501432;End_range=84504122,84504515;submitter_variant_call_id=UW_VH_15670_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    85108707    85108707    16    85108707    85108707    2219:mobile_element_insertion:0    .    .    .    ID=11487852;Name=essv15547656;Alias=ALU_umary_ALU_11164_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639452;submitter_variant_call_id=ALU_umary_ALU_11164_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    85149500    85149500    16    85150073    85150073    2220:copy_number_loss:573    .    .    .    ID=11490858;Name=essv15549134;Alias=UW_VH_55_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639453;Start_range=85148925,85149501;End_range=85150074,85150674;submitter_variant_call_id=UW_VH_55_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    85188638    85188638    16    85189822    85189822    2221:inversion:1184    .    .    .    ID=11494890;Name=essv15551179;Alias=INV_delly_INV00040664_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3639457;Start_range=85188416,85188862;End_range=85189600,85190046;submitter_variant_call_id=INV_delly_INV00040664_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    87191671    87191671    16    87191671    87191671    2222:mobile_element_insertion:0    .    .    .    ID=11502316;Name=essv15554818;Alias=ALU_umary_ALU_11169_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639503;submitter_variant_call_id=ALU_umary_ALU_11169_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
16    87981799    87981799    16    87981799    87981799    2223:indel:0    .    .    .    ID=11507376;Name=essv15557301;Alias=PHASE3_V1_SV_1799_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639539;submitter_variant_call_id=PHASE3_V1_SV_1799_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    88175136    88175136    16    88175136    88175136    2224:indel:0    .    .    .    ID=11514640;Name=essv15560813;Alias=PHASE3_V1_SV_1801_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639542;submitter_variant_call_id=PHASE3_V1_SV_1801_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    88218692    88218692    16    88218692    88218692    2225:indel:0    .    .    .    ID=11518589;Name=essv15562922;Alias=PHASE3_V1_SV_1802_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639544;submitter_variant_call_id=PHASE3_V1_SV_1802_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
16    88478399    88478399    16    88478399    88478399    2226:indel:0    .    .    .    ID=11524402;Name=essv15565870;Alias=PHASE3_V1_SV_1804_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639547;submitter_variant_call_id=PHASE3_V1_SV_1804_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    193756    193756    17    197094    197094    2227:copy_number_loss:3338    .    .    .    ID=11534184;Name=essv15570980;Alias=YL_CN_ITU_3546_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639619;Start_range=192757,194257;End_range=196595,198095;submitter_variant_call_id=YL_CN_ITU_3546_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    723719    723719    17    724861    724861    2228:copy_number_loss:1142    .    .    .    ID=11540487;Name=essv15574684;Alias=BI_GS_DEL1_B1_P2512_435_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639644;Start_range=723720,723720;End_range=724862,724862;submitter_variant_call_id=BI_GS_DEL1_B1_P2512_435_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    1097736    1097736    17    1098191    1098191    2229:copy_number_loss:455    .    .    .    ID=11550029;Name=essv15579309;Alias=BI_GS_DEL1_B1_P2513_48_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639674;Start_range=1097737,1097738;End_range=1098192,1098193;submitter_variant_call_id=BI_GS_DEL1_B1_P2513_48_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    2719915    2719915    17    2721217    2721217    2230:copy_number_loss:1302    .    .    .    ID=11563473;Name=essv15585559;Alias=UW_VH_25192_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639724;Start_range=2719636,2719916;End_range=2721218,2721685;submitter_variant_call_id=UW_VH_25192_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    2904824    2904824    17    2904824    2904824    2231:indel:0    .    .    .    ID=11565947;Name=essv15587736;Alias=PHASE3_V1_SV_1810_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639733;submitter_variant_call_id=PHASE3_V1_SV_1810_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    3734769    3734769    17    3735833    3735833    2232:copy_number_loss:1064    .    .    .    ID=11570948;Name=essv15589676;Alias=BI_GS_DEL1_B5_P2515_664_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639755;Start_range=3734764,3734777;End_range=3735828,3735841;submitter_variant_call_id=BI_GS_DEL1_B5_P2515_664_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    3802516    3802516    17    3802516    3802516    2233:mobile_element_insertion:0    .    .    .    ID=11572752;Name=essv15591661;Alias=ALU_umary_ALU_11183_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639760;submitter_variant_call_id=ALU_umary_ALU_11183_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    4959185    4959185    17    4959185    4959185    2234:mobile_element_insertion:0    .    .    .    ID=11585279;Name=essv15596692;Alias=SVA_umary_SVA_684_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3639801;submitter_variant_call_id=SVA_umary_SVA_684_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    4972481    4972481    17    4972481    4972481    2235:indel:0    .    .    .    ID=11586725;Name=essv15599066;Alias=PHASE3_V1_SV_1814_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639803;submitter_variant_call_id=PHASE3_V1_SV_1814_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    5595706    5595706    17    5597503    5597503    2236:copy_number_loss:1797    .    .    .    ID=11594643;Name=essv15600885;Alias=BI_GS_DEL1_B5_P2517_670_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639819;Start_range=5595707,5595707;End_range=5597504,5597504;submitter_variant_call_id=BI_GS_DEL1_B5_P2517_670_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    6988698    6988698    17    6989939    6989939    2237:copy_number_loss:1241    .    .    .    ID=11599814;Name=essv15603815;Alias=BI_GS_DEL1_B4_P2518_238_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3639857;Start_range=6988684,6988715;End_range=6989925,6989956;submitter_variant_call_id=BI_GS_DEL1_B4_P2518_238_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    8384394    8384394    17    8384394    8384394    2238:indel:0    .    .    .    ID=11609288;Name=essv15608594;Alias=PHASE3_V1_SV_1819_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3639888;submitter_variant_call_id=PHASE3_V1_SV_1819_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    13799655    13799655    17    13799655    13799655    2239:mobile_element_insertion:0    .    .    .    ID=11627202;Name=essv15617316;Alias=ALU_umary_ALU_11218_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640005;submitter_variant_call_id=ALU_umary_ALU_11218_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    14189909    14189909    17    14191556    14191556    2240:copy_number_loss:1647    .    .    .    ID=11630536;Name=essv15619609;Alias=BI_GS_DEL1_B2_P2526_123_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640023;Start_range=14189910,14189910;End_range=14191557,14191557;submitter_variant_call_id=BI_GS_DEL1_B2_P2526_123_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    15511192    15511192    17    15511192    15511192    2241:mobile_element_insertion:0    .    .    .    ID=11643558;Name=essv15624972;Alias=L1_umary_LINE1_2742_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640077;submitter_variant_call_id=L1_umary_LINE1_2742_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    15690933    15690933    17    15794693    15794693    2242:copy_number_gain:103760    .    .    .    ID=11646304;Name=essv15627087;Alias=DUP_uwash_chr17_15690933_15794694_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640086;submitter_variant_call_id=DUP_uwash_chr17_15690933_15794694_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    16661445    16661445    17    16704452    16704452    2243:copy_number_gain:43007    .    .    .    ID=11655779;Name=essv15631496;Alias=DUP_gs_CNV_17_16661446_16704453_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3640115;submitter_variant_call_id=DUP_gs_CNV_17_16661446_16704453_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    16711551    16711551    17    16724681    16724681    2244:copy_number_gain:13130    .    .    .    ID=11658268;Name=essv15633485;Alias=DUP_gs_CNV_17_16711552_16724682_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3640118;submitter_variant_call_id=DUP_gs_CNV_17_16711552_16724682_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    17230369    17230369    17    17231246    17231246    2245:copy_number_loss:877    .    .    .    ID=11662248;Name=essv15635123;Alias=BI_GS_DEL1_B1_P2529_209_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640127;Start_range=17230370,17230370;End_range=17231247,17231247;submitter_variant_call_id=BI_GS_DEL1_B1_P2529_209_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    17734395    17734395    17    17734395    17734395    2246:mobile_element_insertion:0    .    .    .    ID=11665970;Name=essv15636656;Alias=ALU_umary_ALU_11244_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640137;submitter_variant_call_id=ALU_umary_ALU_11244_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    18359813    18359813    17    18376675    18376675    2247:copy_number_loss:16862    .    .    .    ID=11669526;Name=essv15638544;Alias=DUP_gs_CNV_17_18359814_18376676_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640151;submitter_variant_call_id=DUP_gs_CNV_17_18359814_18376676_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    18418795    18418795    17    18465082    18465082    2248:copy_number_loss:46287    .    .    .    ID=11672010;Name=essv15640433;Alias=BI_GS_CNV_17_18418796_18465083_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640153;Start_range=18418296,18418796;End_range=18465083,18465583;submitter_variant_call_id=BI_GS_CNV_17_18418796_18465083_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    18421014    18421014    17    18422387    18422387    2249:copy_number_loss:1373    .    .    .    ID=11673019;Name=essv15641465;Alias=SI_BD_15171_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640154;Start_range=18420879,18421065;End_range=18422338,18422524;submitter_variant_call_id=SI_BD_15171_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    18507409    18507409    17    18522041    18522041    2250:copy_number_gain:14632    .    .    .    ID=11676019;Name=essv15642829;Alias=DUP_gs_CNV_17_18507410_18522042_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3640157;submitter_variant_call_id=DUP_gs_CNV_17_18507410_18522042_A2_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    18585562    18585562    17    18736901    18736901    2251:copy_number_gain:151339    .    .    .    ID=11679938;Name=essv15645065;Alias=DUP_uwash_chr17_18585563_18736902_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640160;submitter_variant_call_id=DUP_uwash_chr17_18585563_18736902_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    18624593    18624593    17    18633670    18633670    2252:copy_number_gain:9077    .    .    .    ID=11683545;Name=essv15646137;Alias=DUP_gs_CNV_17_18624594_18633671_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640164;submitter_variant_call_id=DUP_gs_CNV_17_18624594_18633671_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    18729994    18729994    17    18745197    18745197    2253:copy_number_loss:15203    .    .    .    ID=11688199;Name=essv15647346;Alias=BI_GS_CNV_17_18729995_18745198_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640165;Start_range=18729495,18729995;End_range=18745198,18745698;submitter_variant_call_id=BI_GS_CNV_17_18729995_18745198_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    20662624    20662624    17    20663101    20663101    2254:copy_number_loss:477    .    .    .    ID=11692021;Name=essv15649910;Alias=BI_GS_DEL1_B3_P2532_8_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640213;Start_range=20662584,20662667;End_range=20663061,20663144;submitter_variant_call_id=BI_GS_DEL1_B3_P2532_8_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    21416286    21416286    17    21416286    21416286    2255:indel:0    .    .    .    ID=11696740;Name=essv15651645;Alias=PHASE3_V1_SV_1830_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3640239;submitter_variant_call_id=PHASE3_V1_SV_1830_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    25595068    25595068    17    25595068    25595068    2256:mobile_element_insertion:0    .    .    .    ID=11700826;Name=essv15653628;Alias=ALU_umary_ALU_11262_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640290;submitter_variant_call_id=ALU_umary_ALU_11262_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    26030427    26030427    17    26030427    26030427    2257:indel:0    .    .    .    ID=11702406;Name=essv15655139;Alias=PHASE3_V1_SV_1832_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3640296;submitter_variant_call_id=PHASE3_V1_SV_1832_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    26169410    26169410    17    26169410    26169410    2258:mobile_element_insertion:0    .    .    .    ID=11703046;Name=essv15655819;Alias=ALU_umary_ALU_11264_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640301;submitter_variant_call_id=ALU_umary_ALU_11264_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    26780359    26780359    17    26783482    26783482    2259:copy_number_loss:3123    .    .    .    ID=11703286;Name=essv15656657;Alias=BI_GS_DEL1_B2_P2538_587_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640310;Start_range=26780359,26780361;End_range=26783482,26783484;submitter_variant_call_id=BI_GS_DEL1_B2_P2538_587_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    30893861    30893861    17    30893861    30893861    2260:mobile_element_insertion:0    .    .    .    ID=11712882;Name=essv15660400;Alias=ALU_umary_ALU_11275_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640389;submitter_variant_call_id=ALU_umary_ALU_11275_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    32629273    32629273    17    32629273    32629273    2261:mobile_element_insertion:0    .    .    .    ID=11717185;Name=essv15661624;Alias=ALU_umary_ALU_11283_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640419;submitter_variant_call_id=ALU_umary_ALU_11283_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    35755634    35755634    17    35760345    35760345    2262:copy_number_loss:4711    .    .    .    ID=11726221;Name=essv15666982;Alias=UW_VH_16727_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640491;Start_range=35755375,35755635;End_range=35760346,35760558;submitter_variant_call_id=UW_VH_16727_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    35755639    35755639    17    35758780    35758780    2263:copy_number_loss:3141    .    .    .    ID=11726488;Name=essv15667653;Alias=BI_GS_DEL1_B2_P2547_527_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640492;Start_range=35755624,35755656;End_range=35758765,35758797;submitter_variant_call_id=BI_GS_DEL1_B2_P2547_527_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    36169342    36169342    17    36169342    36169342    2264:mobile_element_insertion:0    .    .    .    ID=11731583;Name=essv15670701;Alias=ALU_umary_ALU_11305_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640510;submitter_variant_call_id=ALU_umary_ALU_11305_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    36543770    36543770    17    36543770    36543770    2265:indel:0    .    .    .    ID=11733142;Name=essv15672486;Alias=PHASE3_V1_SV_1837_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3640522;submitter_variant_call_id=PHASE3_V1_SV_1837_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    36963474    36963474    17    36964936    36964936    2266:copy_number_loss:1462    .    .    .    ID=11734814;Name=essv15673842;Alias=BI_GS_DEL1_B2_P2548_600_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640530;Start_range=36963473,36963478;End_range=36964935,36964940;submitter_variant_call_id=BI_GS_DEL1_B2_P2548_600_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    39421553    39421553    17    39432270    39432270    2267:copy_number_loss:10717    .    .    .    ID=11744194;Name=essv15677895;Alias=YL_CN_GWD_4978_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640582;Start_range=39420554,39422054;End_range=39431771,39433271;submitter_variant_call_id=YL_CN_GWD_4978_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    44165337    44165337    17    44211685    44211685    2268:copy_number_gain:46348    .    .    .    ID=11755851;Name=essv15683424;Alias=DUP_gs_CNV_17_44165338_44211686_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640677;submitter_variant_call_id=DUP_gs_CNV_17_44165338_44211686_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    44230892    44230892    17    44262696    44262696    2269:copy_number_gain:31804    .    .    .    ID=11757078;Name=essv15684277;Alias=DUP_gs_CNV_17_44230893_44262697_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640680;submitter_variant_call_id=DUP_gs_CNV_17_44230893_44262697_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    44341411    44341411    17    44366496    44366496    2270:copy_number_gain:25085    .    .    .    ID=11757776;Name=essv15684987;Alias=DUP_gs_CNV_17_44341412_44366497_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640682;submitter_variant_call_id=DUP_gs_CNV_17_44341412_44366497_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    46505001    46505001    17    46505001    46505001    2271:mobile_element_insertion:0    .    .    .    ID=11766563;Name=essv15688905;Alias=ALU_umary_ALU_11333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640716;submitter_variant_call_id=ALU_umary_ALU_11333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    46617220    46617220    17    46617220    46617220    2272:indel:0    .    .    .    ID=11768486;Name=essv15691792;Alias=PHASE3_V1_SV_1850_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3640718;submitter_variant_call_id=PHASE3_V1_SV_1850_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    48998433    48998433    17    48998433    48998433    2273:mobile_element_insertion:0    .    .    .    ID=11780762;Name=essv15695567;Alias=ALU_umary_ALU_11341_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640759;submitter_variant_call_id=ALU_umary_ALU_11341_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    50398501    50398501    17    50398501    50398501    2274:mobile_element_insertion:0    .    .    .    ID=11785140;Name=essv15698372;Alias=ALU_umary_ALU_11348_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640780;submitter_variant_call_id=ALU_umary_ALU_11348_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    51031207    51031207    17    51031207    51031207    2275:mobile_element_insertion:0    .    .    .    ID=11787084;Name=essv15699263;Alias=ALU_umary_ALU_11353_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640791;submitter_variant_call_id=ALU_umary_ALU_11353_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    51852762    51852762    17    51860719    51860719    2276:copy_number_loss:7957    .    .    .    ID=11789339;Name=essv15700100;Alias=UW_VH_1151_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640805;Start_range=51852220,51852763;End_range=51860720,51861151;submitter_variant_call_id=UW_VH_1151_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    51957127    51957127    17    51957127    51957127    2277:mobile_element_insertion:0    .    .    .    ID=11789966;Name=essv15701091;Alias=ALU_umary_ALU_11356_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640811;submitter_variant_call_id=ALU_umary_ALU_11356_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    54947582    54947582    17    54947582    54947582    2278:mobile_element_insertion:0    .    .    .    ID=11800316;Name=essv15706432;Alias=ALU_umary_ALU_11371_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640859;submitter_variant_call_id=ALU_umary_ALU_11371_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    55089733    55089733    17    55092840    55092840    2279:copy_number_loss:3107    .    .    .    ID=11802189;Name=essv15707569;Alias=BI_GS_DEL1_B4_P2567_13_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3640864;Start_range=55089718,55089750;End_range=55092825,55092857;submitter_variant_call_id=BI_GS_DEL1_B4_P2567_13_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    60485062    60485062    17    60637450    60637450    2280:copy_number_gain:152388    .    .    .    ID=11827903;Name=essv15719733;Alias=DUP_uwash_chr17_60485063_60637451_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3640974;submitter_variant_call_id=DUP_uwash_chr17_60485063_60637451_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    61565903    61565903    17    61565903    61565903    2281:mobile_element_insertion:0    .    .    .    ID=11830798;Name=essv15721603;Alias=ALU_umary_ALU_11398_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3640997;submitter_variant_call_id=ALU_umary_ALU_11398_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    64637296    64637296    17    64637296    64637296    2282:mobile_element_insertion:0    .    .    .    ID=11843786;Name=essv15726342;Alias=L1_umary_LINE1_2772_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641069;submitter_variant_call_id=L1_umary_LINE1_2772_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    66031566    66031566    17    66031566    66031566    2283:indel:0    .    .    .    ID=11847689;Name=essv15729801;Alias=PHASE3_V1_SV_1859_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641106;submitter_variant_call_id=PHASE3_V1_SV_1859_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    68357408    68357408    17    68357408    68357408    2284:mobile_element_insertion:0    .    .    .    ID=11856412;Name=essv15733329;Alias=L1_umary_LINE1_2778_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641150;submitter_variant_call_id=L1_umary_LINE1_2778_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    72173712    72173712    17    72173712    72173712    2285:indel:0    .    .    .    ID=11865846;Name=essv15738438;Alias=PHASE3_V1_SV_1867_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641235;submitter_variant_call_id=PHASE3_V1_SV_1867_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    74046823    74046823    17    74046823    74046823    2286:mobile_element_insertion:0    .    .    .    ID=11871951;Name=essv15741819;Alias=ALU_umary_ALU_11459_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641274;submitter_variant_call_id=ALU_umary_ALU_11459_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    74698959    74698959    17    74698959    74698959    2287:indel:0    .    .    .    ID=11878087;Name=essv15744972;Alias=PHASE3_V1_SV_1869_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641297;submitter_variant_call_id=PHASE3_V1_SV_1869_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    75332032    75332032    17    75332032    75332032    2288:indel:0    .    .    .    ID=11881599;Name=essv15747732;Alias=PHASE3_V1_SV_1870_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641311;submitter_variant_call_id=PHASE3_V1_SV_1870_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    76282239    76282239    17    76283434    76283434    2289:copy_number_loss:1195    .    .    .    ID=11886767;Name=essv15750745;Alias=EM_DL_DEL10442986_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641329;Start_range=76282090,76282390;End_range=76283285,76283585;submitter_variant_call_id=EM_DL_DEL10442986_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    76347345    76347345    17    76347345    76347345    2290:mobile_element_insertion:0    .    .    .    ID=11888596;Name=essv15752539;Alias=ALU_umary_ALU_11463_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641332;submitter_variant_call_id=ALU_umary_ALU_11463_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    78056051    78056051    17    78056051    78056051    2291:mobile_element_insertion:0    .    .    .    ID=11896848;Name=essv15755522;Alias=ALU_umary_ALU_11467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641361;submitter_variant_call_id=ALU_umary_ALU_11467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    78231412    78231412    17    78231412    78231412    2292:indel:0    .    .    .    ID=11899672;Name=essv15757533;Alias=PHASE3_V1_SV_1874_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641369;submitter_variant_call_id=PHASE3_V1_SV_1874_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    78834682    78834682    17    78835347    78835347    2293:copy_number_loss:665    .    .    .    ID=11906156;Name=essv15759937;Alias=BI_GS_DEL1_B5_P2590_858_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641384;Start_range=78834683,78834683;End_range=78835348,78835348;submitter_variant_call_id=BI_GS_DEL1_B5_P2590_858_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    79455402    79455402    17    79455402    79455402    2294:indel:0    .    .    .    ID=11908218;Name=essv15761969;Alias=PHASE3_V1_SV_1876_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641400;submitter_variant_call_id=PHASE3_V1_SV_1876_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    79470459    79470459    17    79471472    79471472    2295:copy_number_loss:1013    .    .    .    ID=11910826;Name=essv15763957;Alias=SI_BD_15535_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641401;Start_range=79470148,79470529;End_range=79471423,79471785;submitter_variant_call_id=SI_BD_15535_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
17    80554355    80554355    17    80554355    80554355    2296:indel:0    .    .    .    ID=11919489;Name=essv15768875;Alias=PHASE3_V1_SV_1882_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641432;submitter_variant_call_id=PHASE3_V1_SV_1882_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
17    80759991    80759991    17    80759991    80759991    2297:mobile_element_insertion:0    .    .    .    ID=11923349;Name=essv15770831;Alias=SVA_umary_SVA_719_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641439;submitter_variant_call_id=SVA_umary_SVA_719_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    1235789    1235789    18    1235789    1235789    2298:mobile_element_insertion:0    .    .    .    ID=11942905;Name=essv15774769;Alias=ALU_umary_ALU_11485_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641517;submitter_variant_call_id=ALU_umary_ALU_11485_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    1830665    1830665    18    1830665    1830665    2299:mobile_element_insertion:0    .    .    .    ID=11947457;Name=essv15776633;Alias=ALU_umary_ALU_11492_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641536;submitter_variant_call_id=ALU_umary_ALU_11492_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    4355880    4355880    18    4355880    4355880    2300:mobile_element_insertion:0    .    .    .    ID=11956265;Name=essv15781144;Alias=ALU_umary_ALU_11506_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641624;submitter_variant_call_id=ALU_umary_ALU_11506_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    4955589    4955589    18    4955986    4955986    2301:copy_number_loss:397    .    .    .    ID=11959870;Name=essv15783421;Alias=BI_GS_DEL1_B3_P2598_42_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641638;Start_range=4955590,4955590;End_range=4955987,4955987;submitter_variant_call_id=BI_GS_DEL1_B3_P2598_42_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    5324642    5324642    18    5326241    5326241    2302:copy_number_loss:1599    .    .    .    ID=11970139;Name=essv15787840;Alias=EM_DL_DEL10449352_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641652;Start_range=5324493,5324793;End_range=5326092,5326392;submitter_variant_call_id=EM_DL_DEL10449352_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    5325025    5325025    18    5325314    5325314    2303:copy_number_loss:289    .    .    .    ID=11973534;Name=essv15789508;Alias=BI_GS_DEL1_B2_P2599_249_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641653;Start_range=5325008,5325044;End_range=5325297,5325333;submitter_variant_call_id=BI_GS_DEL1_B2_P2599_249_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    5457105    5457105    18    5457105    5457105    2304:indel:0    .    .    .    ID=11975814;Name=essv15792090;Alias=PHASE3_V1_SV_1892_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641656;submitter_variant_call_id=PHASE3_V1_SV_1892_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    8659389    8659389    18    8659389    8659389    2305:indel:0    .    .    .    ID=11983690;Name=essv15794877;Alias=PHASE3_V1_SV_1896_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641722;submitter_variant_call_id=PHASE3_V1_SV_1896_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    9196122    9196122    18    9196122    9196122    2306:indel:0    .    .    .    ID=11987193;Name=essv15797271;Alias=PHASE3_V1_SV_1898_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641736;submitter_variant_call_id=PHASE3_V1_SV_1898_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    9225122    9225122    18    9225459    9225459    2307:copy_number_loss:337    .    .    .    ID=11991323;Name=essv15799363;Alias=BI_GS_DEL1_B5_P2603_249_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641738;Start_range=9225123,9225123;End_range=9225460,9225460;submitter_variant_call_id=BI_GS_DEL1_B5_P2603_249_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    9621958    9621958    18    9622232    9622232    2308:copy_number_loss:274    .    .    .    ID=11999348;Name=essv15802216;Alias=UW_VH_42_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641749;Start_range=9621287,9621959;End_range=9622233,9622870;submitter_variant_call_id=UW_VH_42_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    10222278    10222278    18    10223605    10223605    2309:copy_number_loss:1327    .    .    .    ID=12001488;Name=essv15804010;Alias=BI_GS_DEL1_B2_P2604_203_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641768;Start_range=10222279,10222279;End_range=10223606,10223606;submitter_variant_call_id=BI_GS_DEL1_B2_P2604_203_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    11826235    11826235    18    11826235    11826235    2310:indel:0    .    .    .    ID=12010972;Name=essv15809096;Alias=PHASE3_V1_SV_1903_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3641814;submitter_variant_call_id=PHASE3_V1_SV_1903_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    12396640    12396640    18    12396640    12396640    2311:mobile_element_insertion:0    .    .    .    ID=12016816;Name=essv15811256;Alias=ALU_umary_ALU_11549_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641837;submitter_variant_call_id=ALU_umary_ALU_11549_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    13143138    13143138    18    13144146    13144146    2312:copy_number_loss:1008    .    .    .    ID=12018441;Name=essv15812316;Alias=BI_GS_DEL1_B1_P2607_134_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641851;Start_range=13143138,13143140;End_range=13144146,13144148;submitter_variant_call_id=BI_GS_DEL1_B1_P2607_134_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    15095261    15095261    18    15095261    15095261    2313:mobile_element_insertion:0    .    .    .    ID=12026945;Name=essv15817286;Alias=L1_umary_LINE1_2792_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3641920;submitter_variant_call_id=L1_umary_LINE1_2792_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    21990631    21990631    18    21992074    21992074    2314:copy_number_loss:1443    .    .    .    ID=12033315;Name=essv15820002;Alias=BI_GS_DEL1_B1_P2615_890_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3641980;Start_range=21990626,21990638;End_range=21992069,21992081;submitter_variant_call_id=BI_GS_DEL1_B1_P2615_890_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    23473581    23473581    18    23473581    23473581    2315:indel:0    .    .    .    ID=12035947;Name=essv15821714;Alias=PHASE3_V1_SV_1906_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642011;submitter_variant_call_id=PHASE3_V1_SV_1906_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    24571614    24571614    18    24572337    24572337    2316:copy_number_loss:723    .    .    .    ID=12040250;Name=essv15825601;Alias=BI_GS_DEL1_B3_P2618_26_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642033;Start_range=24571615,24571615;End_range=24572338,24572338;submitter_variant_call_id=BI_GS_DEL1_B3_P2618_26_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    25871828    25871828    18    25871828    25871828    2317:mobile_element_insertion:0    .    .    .    ID=12043728;Name=essv15828717;Alias=ALU_umary_ALU_11598_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642054;submitter_variant_call_id=ALU_umary_ALU_11598_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    27156369    27156369    18    27156369    27156369    2318:mobile_element_insertion:0    .    .    .    ID=12052499;Name=essv15831578;Alias=ALU_umary_ALU_11605_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642084;submitter_variant_call_id=ALU_umary_ALU_11605_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    27182103    27182103    18    27182103    27182103    2319:mobile_element_insertion:0    .    .    .    ID=12053433;Name=essv15832532;Alias=ALU_umary_ALU_11606_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642086;submitter_variant_call_id=ALU_umary_ALU_11606_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    27531873    27531873    18    27531873    27531873    2320:mobile_element_insertion:0    .    .    .    ID=12055021;Name=essv15833069;Alias=ALU_umary_ALU_11607_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642095;submitter_variant_call_id=ALU_umary_ALU_11607_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    27800860    27800860    18    27800860    27800860    2321:mobile_element_insertion:0    .    .    .    ID=12056731;Name=essv15834671;Alias=ALU_umary_ALU_11610_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642098;submitter_variant_call_id=ALU_umary_ALU_11610_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    31533207    31533207    18    31533207    31533207    2322:mobile_element_insertion:0    .    .    .    ID=12072109;Name=essv15839328;Alias=ALU_umary_ALU_11628_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642179;submitter_variant_call_id=ALU_umary_ALU_11628_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    36512545    36512545    18    36512545    36512545    2323:mobile_element_insertion:0    .    .    .    ID=12082814;Name=essv15846037;Alias=ALU_umary_ALU_11637_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642268;submitter_variant_call_id=ALU_umary_ALU_11637_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    38259898    38259898    18    38266755    38266755    2324:copy_number_loss:6857    .    .    .    ID=12088890;Name=essv15849063;Alias=BI_GS_DEL1_B2_P2632_171_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642303;Start_range=38259899,38259899;End_range=38266756,38266756;submitter_variant_call_id=BI_GS_DEL1_B2_P2632_171_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    38348167    38348167    18    38348167    38348167    2325:mobile_element_insertion:0    .    .    .    ID=12090402;Name=essv15850734;Alias=ALU_umary_ALU_11643_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642306;submitter_variant_call_id=ALU_umary_ALU_11643_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    38686585    38686585    18    38686585    38686585    2326:mobile_element_insertion:0    .    .    .    ID=12091390;Name=essv15851696;Alias=ALU_umary_ALU_11645_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642313;submitter_variant_call_id=ALU_umary_ALU_11645_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    38864884    38864884    18    38868158    38868158    2327:copy_number_loss:3274    .    .    .    ID=12093518;Name=essv15853573;Alias=YL_CN_CHS_3966_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642320;Start_range=38863885,38865385;End_range=38867659,38869159;submitter_variant_call_id=YL_CN_CHS_3966_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    44306568    44306568    18    44306568    44306568    2328:mobile_element_insertion:0    .    .    .    ID=12110164;Name=essv15857967;Alias=SVA_umary_SVA_728_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642442;submitter_variant_call_id=SVA_umary_SVA_728_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    44927631    44927631    18    44929131    44929131    2329:copy_number_loss:1500    .    .    .    ID=12112502;Name=essv15860049;Alias=UW_VH_16385_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642458;Start_range=44927372,44927632;End_range=44929132,44929393;submitter_variant_call_id=UW_VH_16385_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    46293246    46293246    18    46293246    46293246    2330:indel:0    .    .    .    ID=12115221;Name=essv15861840;Alias=PHASE3_V1_SV_1923_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642479;submitter_variant_call_id=PHASE3_V1_SV_1923_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    46523833    46523833    18    46523833    46523833    2331:indel:0    .    .    .    ID=12116040;Name=essv15862872;Alias=PHASE3_V1_SV_1925_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642484;submitter_variant_call_id=PHASE3_V1_SV_1925_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    46979008    46979008    18    46979602    46979602    2332:copy_number_loss:594    .    .    .    ID=12117898;Name=essv15864073;Alias=BI_GS_DEL1_B1_P2640_867_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642493;Start_range=46979007,46979011;End_range=46979601,46979605;submitter_variant_call_id=BI_GS_DEL1_B1_P2640_867_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    47147439    47147439    18    47147439    47147439    2333:mobile_element_insertion:0    .    .    .    ID=12120154;Name=essv15866133;Alias=ALU_umary_ALU_11686_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642495;submitter_variant_call_id=ALU_umary_ALU_11686_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    47337314    47337314    18    47337314    47337314    2334:mobile_element_insertion:0    .    .    .    ID=12122682;Name=essv15867655;Alias=SVA_umary_SVA_729_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642499;submitter_variant_call_id=SVA_umary_SVA_729_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    47694967    47694967    18    47698388    47698388    2335:copy_number_loss:3421    .    .    .    ID=12125078;Name=essv15869075;Alias=UW_VH_20493_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642506;Start_range=47694540,47694968;End_range=47698389,47698886;submitter_variant_call_id=UW_VH_20493_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    50462569    50462569    18    50463031    50463031    2336:copy_number_loss:462    .    .    .    ID=12140255;Name=essv15874525;Alias=BI_GS_DEL1_B2_P2644_349_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642558;Start_range=50462570,50462570;End_range=50463032,50463032;submitter_variant_call_id=BI_GS_DEL1_B2_P2644_349_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    50612384    50612384    18    50612966    50612966    2337:copy_number_loss:582    .    .    .    ID=12141022;Name=essv15876281;Alias=BI_GS_DEL1_B4_P2644_147_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642560;Start_range=50612374,50612396;End_range=50612956,50612978;submitter_variant_call_id=BI_GS_DEL1_B4_P2644_147_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    50986551    50986551    18    50986551    50986551    2338:mobile_element_insertion:0    .    .    .    ID=12142664;Name=essv15877572;Alias=ALU_umary_ALU_11708_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642562;submitter_variant_call_id=ALU_umary_ALU_11708_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    51044523    51044523    18    51048956    51048956    2339:copy_number_gain:4433    .    .    .    ID=12143345;Name=essv15877853;Alias=DUP_gs_CNV_18_51044524_51048957_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3642565;submitter_variant_call_id=DUP_gs_CNV_18_51044524_51048957_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    51952949    51952949    18    51956959    51956959    2340:copy_number_loss:4010    .    .    .    ID=12149431;Name=essv15882552;Alias=UW_VH_4750_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642580;Start_range=51952504,51952950;End_range=51956960,51957441;submitter_variant_call_id=UW_VH_4750_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    53288745    53288745    18    53288745    53288745    2341:indel:0    .    .    .    ID=12158049;Name=essv15885694;Alias=PHASE3_V1_SV_1929_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642599;submitter_variant_call_id=PHASE3_V1_SV_1929_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    53929262    53929262    18    53929262    53929262    2342:indel:0    .    .    .    ID=12162115;Name=essv15887856;Alias=PHASE3_V1_SV_1930_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642607;submitter_variant_call_id=PHASE3_V1_SV_1930_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    54244954    54244954    18    54245644    54245644    2343:copy_number_loss:690    .    .    .    ID=12165481;Name=essv15888701;Alias=BI_GS_DEL1_B5_P2648_325_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642615;Start_range=54244954,54244957;End_range=54245644,54245647;submitter_variant_call_id=BI_GS_DEL1_B5_P2648_325_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    54357066    54357066    18    54357066    54357066    2344:mobile_element_insertion:0    .    .    .    ID=12165731;Name=essv15888857;Alias=ALU_umary_ALU_11719_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642617;submitter_variant_call_id=ALU_umary_ALU_11719_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    54706192    54706192    18    54706192    54706192    2345:mobile_element_insertion:0    .    .    .    ID=12168604;Name=essv15890215;Alias=ALU_umary_ALU_11724_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642623;submitter_variant_call_id=ALU_umary_ALU_11724_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    54946734    54946734    18    54948717    54948717    2346:copy_number_loss:1983    .    .    .    ID=12170861;Name=essv15892300;Alias=BI_GS_DEL1_B1_P2648_853_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642627;Start_range=54946735,54946735;End_range=54948718,54948718;submitter_variant_call_id=BI_GS_DEL1_B1_P2648_853_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    55381572    55381572    18    55381572    55381572    2347:mobile_element_insertion:0    .    .    .    ID=12172558;Name=essv15893423;Alias=SVA_umary_SVA_732_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642636;submitter_variant_call_id=SVA_umary_SVA_732_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    57372770    57372770    18    57372770    57372770    2348:mobile_element_insertion:0    .    .    .    ID=12184870;Name=essv15896603;Alias=ALU_umary_ALU_11737_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642668;submitter_variant_call_id=ALU_umary_ALU_11737_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    59672756    59672756    18    59674195    59674195    2349:copy_number_loss:1439    .    .    .    ID=12192913;Name=essv15901428;Alias=UW_VH_1623_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642740;Start_range=59672322,59672757;End_range=59674196,59674709;submitter_variant_call_id=UW_VH_1623_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    59713733    59713733    18    59713733    59713733    2350:mobile_element_insertion:0    .    .    .    ID=12195234;Name=essv15902668;Alias=ALU_umary_ALU_11754_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642741;submitter_variant_call_id=ALU_umary_ALU_11754_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    60686112    60686112    18    60686112    60686112    2351:mobile_element_insertion:0    .    .    .    ID=12198400;Name=essv15903849;Alias=ALU_umary_ALU_11760_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642761;submitter_variant_call_id=ALU_umary_ALU_11760_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    60932138    60932138    18    60932138    60932138    2352:indel:0    .    .    .    ID=12199316;Name=essv15905884;Alias=PHASE3_V1_SV_1935_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642766;submitter_variant_call_id=PHASE3_V1_SV_1935_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    63487286    63487286    18    63487286    63487286    2353:mobile_element_insertion:0    .    .    .    ID=12214749;Name=essv15911683;Alias=ALU_umary_ALU_11774_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642846;submitter_variant_call_id=ALU_umary_ALU_11774_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    63723835    63723835    18    63732367    63732367    2354:copy_number_loss:8532    .    .    .    ID=12216060;Name=essv15913378;Alias=BI_GS_DEL1_B5_P2657_732_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642855;Start_range=63723836,63723836;End_range=63732368,63732368;submitter_variant_call_id=BI_GS_DEL1_B5_P2657_732_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    63766844    63766844    18    63769200    63769200    2355:copy_number_loss:2356    .    .    .    ID=12216828;Name=essv15914956;Alias=UW_VH_10151_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642857;Start_range=63766397,63766845;End_range=63769201,63769679;submitter_variant_call_id=UW_VH_10151_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    64856425    64856425    18    64856425    64856425    2356:indel:0    .    .    .    ID=12223779;Name=essv15919181;Alias=PHASE3_V1_SV_1937_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642897;submitter_variant_call_id=PHASE3_V1_SV_1937_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    66228959    66228959    18    66229339    66229339    2357:copy_number_loss:380    .    .    .    ID=12233589;Name=essv15922133;Alias=BI_GS_DEL1_B3_P2660_16_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642941;Start_range=66228960,66228960;End_range=66229340,66229340;submitter_variant_call_id=BI_GS_DEL1_B3_P2660_16_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    66572510    66572510    18    66572510    66572510    2358:mobile_element_insertion:0    .    .    .    ID=12238953;Name=essv15925745;Alias=ALU_umary_ALU_11795_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3642956;submitter_variant_call_id=ALU_umary_ALU_11795_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    67283642    67283642    18    67283642    67283642    2359:indel:0    .    .    .    ID=12245417;Name=essv15930038;Alias=PHASE3_V1_SV_1939_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3642972;submitter_variant_call_id=PHASE3_V1_SV_1939_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    68383988    68383988    18    68387113    68387113    2360:copy_number_loss:3125    .    .    .    ID=12248813;Name=essv15931478;Alias=SI_BD_15969_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3642995;Start_range=68383939,68384039;End_range=68387064,68387164;submitter_variant_call_id=SI_BD_15969_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    68438288    68438288    18    68438288    68438288    2361:mobile_element_insertion:0    .    .    .    ID=12249119;Name=essv15931678;Alias=ALU_umary_ALU_11802_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643000;submitter_variant_call_id=ALU_umary_ALU_11802_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    73901639    73901639    18    73902033    73902033    2362:copy_number_loss:394    .    .    .    ID=12268073;Name=essv15937043;Alias=BI_GS_DEL1_B2_P2667_732_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643161;Start_range=73901639,73901641;End_range=73902033,73902035;submitter_variant_call_id=BI_GS_DEL1_B2_P2667_732_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    73953938    73953938    18    73953938    73953938    2363:mobile_element_insertion:0    .    .    .    ID=12268658;Name=essv15938860;Alias=ALU_umary_ALU_11827_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643168;submitter_variant_call_id=ALU_umary_ALU_11827_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    74347196    74347196    18    74348008    74348008    2364:copy_number_loss:812    .    .    .    ID=12270922;Name=essv15940091;Alias=UW_VH_1203_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643181;Start_range=74346768,74347197;End_range=74348009,74348528;submitter_variant_call_id=UW_VH_1203_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    74638700    74638700    18    74638700    74638700    2365:mobile_element_insertion:0    .    .    .    ID=12274385;Name=essv15943261;Alias=ALU_umary_ALU_11840_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643198;submitter_variant_call_id=ALU_umary_ALU_11840_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    75266982    75266982    18    75268166    75268166    2366:copy_number_loss:1184    .    .    .    ID=12276662;Name=essv15946137;Alias=UW_VH_3430_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643217;Start_range=75266507,75266983;End_range=75268167,75268583;submitter_variant_call_id=UW_VH_3430_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    75267028    75267028    18    75267560    75267560    2367:copy_number_loss:532    .    .    .    ID=12278520;Name=essv15948080;Alias=BI_GS_DEL1_B4_P2669_58_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643218;Start_range=75267003,75267055;End_range=75267535,75267587;submitter_variant_call_id=BI_GS_DEL1_B4_P2669_58_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    75846482    75846482    18    75846482    75846482    2368:mobile_element_insertion:0    .    .    .    ID=12282024;Name=essv15949196;Alias=ALU_umary_ALU_11848_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643242;submitter_variant_call_id=ALU_umary_ALU_11848_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    76150337    76150337    18    76150337    76150337    2369:indel:0    .    .    .    ID=12283524;Name=essv15951101;Alias=PHASE3_V1_SV_1945_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643256;submitter_variant_call_id=PHASE3_V1_SV_1945_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    76202128    76202128    18    76203348    76203348    2370:copy_number_loss:1220    .    .    .    ID=12286692;Name=essv15953126;Alias=BI_GS_DEL1_B2_P2670_154_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643265;Start_range=76202129,76202129;End_range=76203349,76203349;submitter_variant_call_id=BI_GS_DEL1_B2_P2670_154_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    76614914    76614914    18    76614914    76614914    2371:indel:0    .    .    .    ID=12290951;Name=essv15955044;Alias=PHASE3_V1_SV_1946_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643280;submitter_variant_call_id=PHASE3_V1_SV_1946_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
18    76662371    76662371    18    76666355    76666355    2372:copy_number_loss:3984    .    .    .    ID=12293126;Name=essv15955701;Alias=UW_VH_19078_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643281;Start_range=76662168,76662372;End_range=76666356,76666485;submitter_variant_call_id=UW_VH_19078_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    76664253    76664253    18    76665057    76665057    2373:copy_number_loss:804    .    .    .    ID=12293263;Name=essv15955806;Alias=EM_DL_DEL10478364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643282;Start_range=76664104,76664404;End_range=76664908,76665208;submitter_variant_call_id=EM_DL_DEL10478364_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    77057707    77057707    18    77058974    77058974    2374:copy_number_loss:1267    .    .    .    ID=12297823;Name=essv15956433;Alias=BI_GS_DEL1_B5_P2671_66_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643299;Start_range=77057705,77057712;End_range=77058972,77058979;submitter_variant_call_id=BI_GS_DEL1_B5_P2671_66_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    77309945    77309945    18    77312088    77312088    2375:copy_number_loss:2143    .    .    .    ID=12299153;Name=essv15958010;Alias=BI_GS_DEL1_B1_P2671_226_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643305;Start_range=77309946,77309946;End_range=77312089,77312089;submitter_variant_call_id=BI_GS_DEL1_B1_P2671_226_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
18    77792972    77792972    18    77792972    77792972    2376:indel:0    .    .    .    ID=12306742;Name=essv15961364;Alias=PHASE3_V1_SV_1948_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643329;submitter_variant_call_id=PHASE3_V1_SV_1948_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    393558    393558    19    395009    395009    2377:copy_number_loss:1451    .    .    .    ID=12325026;Name=essv15963465;Alias=YL_CN_TSI_3819_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643349;Start_range=392559,394059;End_range=394510,396010;submitter_variant_call_id=YL_CN_TSI_3819_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    398537    398537    19    398537    398537    2378:indel:0    .    .    .    ID=12328201;Name=essv15965404;Alias=PHASE3_V1_SV_1950_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643350;submitter_variant_call_id=PHASE3_V1_SV_1950_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    2909163    2909163    19    2910883    2910883    2379:copy_number_loss:1720    .    .    .    ID=12339867;Name=essv15971312;Alias=YL_CN_BEB_3216_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643443;Start_range=2908164,2909664;End_range=2910384,2911884;submitter_variant_call_id=YL_CN_BEB_3216_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    2909362    2909362    19    2910539    2910539    2380:copy_number_loss:1177    .    .    .    ID=12345557;Name=essv15973655;Alias=EM_DL_DEL10483187_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643444;Start_range=2909213,2909513;End_range=2910390,2910690;submitter_variant_call_id=EM_DL_DEL10483187_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    3711007    3711007    19    3711332    3711332    2381:copy_number_loss:325    .    .    .    ID=12350355;Name=essv15976334;Alias=SI_BD_16171_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643467;Start_range=3710823,3711058;End_range=3711283,3711518;submitter_variant_call_id=SI_BD_16171_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    3866386    3866386    19    3866386    3866386    2382:indel:0    .    .    .    ID=12354097;Name=essv15979079;Alias=PHASE3_V1_SV_1953_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643479;submitter_variant_call_id=PHASE3_V1_SV_1953_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    4328465    4328465    19    4328465    4328465    2383:indel:0    .    .    .    ID=12359600;Name=essv15981451;Alias=PHASE3_V1_SV_1954_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3643500;submitter_variant_call_id=PHASE3_V1_SV_1954_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    11517417    11517417    19    11518618    11518618    2384:copy_number_loss:1201    .    .    .    ID=12379635;Name=essv15990789;Alias=UW_VH_4065_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643671;Start_range=11517167,11517418;End_range=11518619,11518891;submitter_variant_call_id=UW_VH_4065_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    12556642    12556642    19    12558235    12558235    2385:copy_number_loss:1593    .    .    .    ID=12383551;Name=essv15992845;Alias=BI_GS_DEL1_B4_P2685_68_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643703;Start_range=12556631,12556656;End_range=12558224,12558249;submitter_variant_call_id=BI_GS_DEL1_B4_P2685_68_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    12694866    12694866    19    12698923    12698923    2386:copy_number_loss:4057    .    .    .    ID=12388133;Name=essv15994537;Alias=BI_GS_DEL1_B4_P2685_96_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643709;Start_range=12694867,12694868;End_range=12698924,12698925;submitter_variant_call_id=BI_GS_DEL1_B4_P2685_96_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    13775664    13775664    19    13776830    13776830    2387:copy_number_loss:1166    .    .    .    ID=12392160;Name=essv15996728;Alias=BI_GS_DEL1_B1_P2686_534_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643727;Start_range=13775665,13775665;End_range=13776831,13776831;submitter_variant_call_id=BI_GS_DEL1_B1_P2686_534_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    15046390    15046390    19    15049475    15049475    2388:copy_number_loss:3085    .    .    .    ID=12397459;Name=essv15999338;Alias=BI_GS_DEL1_B1_P2688_43_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643759;Start_range=15046391,15046391;End_range=15049476,15049476;submitter_variant_call_id=BI_GS_DEL1_B1_P2688_43_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    15927951    15927951    19    15927951    15927951    2389:mobile_element_insertion:0    .    .    .    ID=12402897;Name=essv16002045;Alias=ALU_umary_ALU_11883_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643779;submitter_variant_call_id=ALU_umary_ALU_11883_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    19258011    19258011    19    19258290    19258290    2390:copy_number_loss:279    .    .    .    ID=12409449;Name=essv16005279;Alias=BI_GS_DEL1_B4_P2692_36_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643846;Start_range=19258012,19258012;End_range=19258291,19258291;submitter_variant_call_id=BI_GS_DEL1_B4_P2692_36_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    20595834    20595834    19    20717949    20717949    2391:copy_number_loss:122115    .    .    .    ID=12415917;Name=essv16007667;Alias=BI_GS_DEL2_B1_P0548_2_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643884;Start_range=20595835,20595835;End_range=20717950,20717950;submitter_variant_call_id=BI_GS_DEL2_B1_P0548_2_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    20638287    20638287    19    20652747    20652747    2392:copy_number_loss:14460    .    .    .    ID=12416126;Name=essv16008063;Alias=BI_GS_DEL1_B2_P2693_288_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643885;Start_range=20638282,20638295;End_range=20652742,20652755;submitter_variant_call_id=BI_GS_DEL1_B2_P2693_288_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    20984714    20984714    19    20984714    20984714    2393:mobile_element_insertion:0    .    .    .    ID=12418974;Name=essv16009884;Alias=ALU_umary_ALU_11896_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3643903;submitter_variant_call_id=ALU_umary_ALU_11896_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    21752922    21752922    19    21756702    21756702    2394:copy_number_gain:3780    .    .    .    ID=12422915;Name=essv16012017;Alias=DUP_gs_CNV_19_21752923_21756703_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3643926;submitter_variant_call_id=DUP_gs_CNV_19_21752923_21756703_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    23140877    23140877    19    23142940    23142940    2395:copy_number_loss:2063    .    .    .    ID=12431399;Name=essv16015975;Alias=SI_BD_16432_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643976;Start_range=23140620,23140928;End_range=23142875,23143199;submitter_variant_call_id=SI_BD_16432_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    23465134    23465134    19    23466784    23466784    2396:copy_number_loss:1650    .    .    .    ID=12433652;Name=essv16017343;Alias=BI_GS_DEL1_B1_P2696_330_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3643992;Start_range=23465133,23465138;End_range=23466783,23466788;submitter_variant_call_id=BI_GS_DEL1_B1_P2696_330_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    24011299    24011299    19    24011299    24011299    2397:mobile_element_insertion:0    .    .    .    ID=12444081;Name=essv16021801;Alias=SVA_umary_SVA_746_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644024;submitter_variant_call_id=SVA_umary_SVA_746_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    24185642    24185642    19    24185642    24185642    2398:indel:0    .    .    .    ID=12448529;Name=essv16024816;Alias=PHASE3_V1_SV_1968_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644031;submitter_variant_call_id=PHASE3_V1_SV_1968_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    24571472    24571472    19    24571472    24571472    2399:mobile_element_insertion:0    .    .    .    ID=12453277;Name=essv16026865;Alias=L1_umary_LINE1_2865_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644057;submitter_variant_call_id=L1_umary_LINE1_2865_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    27836577    27836577    19    27836577    27836577    2400:mobile_element_insertion:0    .    .    .    ID=12457906;Name=essv16027722;Alias=ALU_umary_ALU_11912_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644064;submitter_variant_call_id=ALU_umary_ALU_11912_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    27961357    27961357    19    27963240    27963240    2401:copy_number_loss:1883    .    .    .    ID=12459746;Name=essv16029588;Alias=EM_DL_DEL10494078_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644070;Start_range=27961208,27961508;End_range=27963091,27963391;submitter_variant_call_id=EM_DL_DEL10494078_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    30448211    30448211    19    30448211    30448211    2402:mobile_element_insertion:0    .    .    .    ID=12465563;Name=essv16033136;Alias=ALU_umary_ALU_11919_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644129;submitter_variant_call_id=ALU_umary_ALU_11919_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    31013159    31013159    19    31013159    31013159    2403:indel:0    .    .    .    ID=12471292;Name=essv16035149;Alias=PHASE3_V1_SV_1971_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644139;submitter_variant_call_id=PHASE3_V1_SV_1971_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    31287471    31287471    19    31289745    31289745    2404:copy_number_loss:2274    .    .    .    ID=12475340;Name=essv16037316;Alias=EM_DL_DEL48080_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644143;Start_range=31287322,31287622;End_range=31289596,31289896;submitter_variant_call_id=EM_DL_DEL48080_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    31690683    31690683    19    31690683    31690683    2405:mobile_element_insertion:0    .    .    .    ID=12478328;Name=essv16039284;Alias=ALU_umary_ALU_11924_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644146;submitter_variant_call_id=ALU_umary_ALU_11924_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    33949706    33949706    19    33949706    33949706    2406:indel:0    .    .    .    ID=12484924;Name=essv16043043;Alias=PHASE3_V1_SV_1975_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644188;submitter_variant_call_id=PHASE3_V1_SV_1975_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    35073551    35073551    19    35073551    35073551    2407:mobile_element_insertion:0    .    .    .    ID=12488768;Name=essv16044437;Alias=ALU_umary_ALU_11935_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644211;submitter_variant_call_id=ALU_umary_ALU_11935_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    35661064    35661064    19    35665795    35665795    2408:copy_number_loss:4731    .    .    .    ID=12490752;Name=essv16045545;Alias=BI_GS_DEL1_B5_P2708_704_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644227;Start_range=35661064,35661066;End_range=35665795,35665797;submitter_variant_call_id=BI_GS_DEL1_B5_P2708_704_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    36662693    36662693    19    36662963    36662963    2409:copy_number_loss:270    .    .    .    ID=12497330;Name=essv16048004;Alias=UW_VH_24943_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644248;Start_range=36662340,36662694;End_range=36662964,36663168;submitter_variant_call_id=UW_VH_24943_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    36840751    36840751    19    36847073    36847073    2410:copy_number_loss:6322    .    .    .    ID=12497931;Name=essv16049365;Alias=BI_GS_DEL1_B3_P2709_19_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644255;Start_range=36840752,36840752;End_range=36847074,36847074;submitter_variant_call_id=BI_GS_DEL1_B3_P2709_19_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    38031458    38031458    19    38031458    38031458    2411:mobile_element_insertion:0    .    .    .    ID=12502914;Name=essv16051809;Alias=ALU_umary_ALU_11946_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644289;submitter_variant_call_id=ALU_umary_ALU_11946_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    39240835    39240835    19    39240835    39240835    2412:indel:0    .    .    .    ID=12507507;Name=essv16053623;Alias=PHASE3_V1_SV_1980_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644311;submitter_variant_call_id=PHASE3_V1_SV_1980_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    46278622    46278622    19    46279602    46279602    2413:copy_number_loss:980    .    .    .    ID=12535583;Name=essv16067855;Alias=BI_GS_DEL1_B2_P2719_138_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644512;Start_range=46278623,46278623;End_range=46279603,46279603;submitter_variant_call_id=BI_GS_DEL1_B2_P2719_138_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    46314915    46314915    19    46316827    46316827    2414:copy_number_loss:1912    .    .    .    ID=12537704;Name=essv16068438;Alias=BI_GS_DEL1_B2_P2719_161_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644513;Start_range=46314908,46314925;End_range=46316820,46316837;submitter_variant_call_id=BI_GS_DEL1_B2_P2719_161_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    46622652    46622652    19    46628255    46628255    2415:copy_number_loss:5603    .    .    .    ID=12538054;Name=essv16068630;Alias=BI_GS_DEL1_B2_P2719_364_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644520;Start_range=46622636,46622670;End_range=46628239,46628273;submitter_variant_call_id=BI_GS_DEL1_B2_P2719_364_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    49327480    49327480    19    49327480    49327480    2416:indel:0    .    .    .    ID=12548598;Name=essv16074457;Alias=PHASE3_V1_SV_1989_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644602;submitter_variant_call_id=PHASE3_V1_SV_1989_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    50996910    50996910    19    50996910    50996910    2417:indel:0    .    .    .    ID=12556398;Name=essv16077205;Alias=PHASE3_V1_SV_1991_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644644;submitter_variant_call_id=PHASE3_V1_SV_1991_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    51077884    51077884    19    51082506    51082506    2418:copy_number_loss:4622    .    .    .    ID=12558143;Name=essv16078184;Alias=BI_GS_DEL1_B3_P2724_2_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644645;Start_range=51077885,51077885;End_range=51082507,51082507;submitter_variant_call_id=BI_GS_DEL1_B3_P2724_2_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    52134834    52134834    19    52149092    52149092    2419:copy_number_loss:14258    .    .    .    ID=12562214;Name=essv16080849;Alias=DUP_gs_CNV_19_52134835_52149093_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644676;submitter_variant_call_id=DUP_gs_CNV_19_52134835_52149093_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    52888073    52888073    19    52888073    52888073    2420:mobile_element_insertion:0    .    .    .    ID=12568793;Name=essv16082561;Alias=ALU_umary_ALU_11979_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644691;submitter_variant_call_id=ALU_umary_ALU_11979_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    53096014    53096014    19    53097617    53097617    2421:copy_number_loss:1603    .    .    .    ID=12574072;Name=essv16085292;Alias=BI_GS_DEL1_B1_P2726_60_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644703;Start_range=53096015,53096015;End_range=53097618,53097618;submitter_variant_call_id=BI_GS_DEL1_B1_P2726_60_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    53422194    53422194    19    53424195    53424195    2422:copy_number_loss:2001    .    .    .    ID=12577302;Name=essv16088205;Alias=SI_BD_16689_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644729;Start_range=53421877,53422282;End_range=53424146,53424514;submitter_variant_call_id=SI_BD_16689_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    53799133    53799133    19    53799133    53799133    2423:mobile_element_insertion:0    .    .    .    ID=12579920;Name=essv16089559;Alias=ALU_umary_ALU_11982_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644746;submitter_variant_call_id=ALU_umary_ALU_11982_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    54036369    54036369    19    54036369    54036369    2424:mobile_element_insertion:0    .    .    .    ID=12580399;Name=essv16089940;Alias=ALU_umary_ALU_11984_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644761;submitter_variant_call_id=ALU_umary_ALU_11984_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    54727997    54727997    19    54746909    54746909    2425:copy_number_gain:18912    .    .    .    ID=12586744;Name=essv16092019;Alias=DUP_gs_CNV_19_54727998_54746910_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3644787;submitter_variant_call_id=DUP_gs_CNV_19_54727998_54746910_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    54810486    54810486    19    54811698    54811698    2426:copy_number_loss:1212    .    .    .    ID=12590750;Name=essv16094864;Alias=YL_CN_CHB_4189_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644798;Start_range=54809487,54810987;End_range=54811199,54812699;submitter_variant_call_id=YL_CN_CHB_4189_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    54810731    54810731    19    54811513    54811513    2427:copy_number_loss:782    .    .    .    ID=12593284;Name=essv16097159;Alias=SI_BD_16715_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644799;Start_range=54810460,54810797;End_range=54811464,54811786;submitter_variant_call_id=SI_BD_16715_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
19    55338841    55338841    19    55355280    55355280    2428:copy_number_loss:16439    .    .    .    ID=12596085;Name=essv16099872;Alias=DUP_gs_CNV_19_55338842_55355281_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644818;submitter_variant_call_id=DUP_gs_CNV_19_55338842_55355281_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    55470569    55470569    19    55472051    55472051    2429:copy_number_loss:1482    .    .    .    ID=12596553;Name=essv16100269;Alias=UW_VH_1921_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644825;Start_range=55470213,55470570;End_range=55472052,55472367;submitter_variant_call_id=UW_VH_1921_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    57023578    57023578    19    57023578    57023578    2430:mobile_element_insertion:0    .    .    .    ID=12605044;Name=essv16102988;Alias=ALU_umary_ALU_11997_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644870;submitter_variant_call_id=ALU_umary_ALU_11997_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
19    57425531    57425531    19    57425531    57425531    2431:mobile_element_insertion:0    .    .    .    ID=12606910;Name=essv16104164;Alias=ALU_umary_ALU_11999_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644880;submitter_variant_call_id=ALU_umary_ALU_11999_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    594427    594427    20    594427    594427    2432:indel:0    .    .    .    ID=12611744;Name=essv16108606;Alias=PHASE3_V1_SV_2001_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3644959;submitter_variant_call_id=PHASE3_V1_SV_2001_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    1389095    1389095    20    1390814    1390814    2433:copy_number_loss:1719    .    .    .    ID=12616574;Name=essv16110996;Alias=UW_VH_3735_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644978;Start_range=1388653,1389096;End_range=1390815,1391293;submitter_variant_call_id=UW_VH_3735_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    1560738    1560738    20    1593684    1593684    2434:copy_number_loss:32946    .    .    .    ID=12622686;Name=essv16115196;Alias=YL_CN_CHB_4219_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644983;Start_range=1559739,1561239;End_range=1593185,1594685;submitter_variant_call_id=YL_CN_CHB_4219_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    1589900    1589900    20    1593852    1593852    2435:copy_number_loss:3952    .    .    .    ID=12629507;Name=essv16117554;Alias=BI_GS_CNV_20_1589901_1593853_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3644984;Start_range=1589401,1589901;End_range=1593853,1594353;submitter_variant_call_id=BI_GS_CNV_20_1589901_1593853_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    1990375    1990375    20    1990375    1990375    2436:mobile_element_insertion:0    .    .    .    ID=12632975;Name=essv16118670;Alias=ALU_umary_ALU_12015_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3644991;submitter_variant_call_id=ALU_umary_ALU_12015_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    2359922    2359922    20    2360517    2360517    2437:copy_number_loss:595    .    .    .    ID=12635909;Name=essv16120441;Alias=SI_BD_16789_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645011;Start_range=2359873,2359973;End_range=2360468,2360568;submitter_variant_call_id=SI_BD_16789_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    4082845    4082845    20    4082845    4082845    2438:mobile_element_insertion:0    .    .    .    ID=12642016;Name=essv16123326;Alias=SVA_umary_SVA_777_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645069;submitter_variant_call_id=SVA_umary_SVA_777_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    5021131    5021131    20    5021131    5021131    2439:mobile_element_insertion:0    .    .    .    ID=12646284;Name=essv16125668;Alias=ALU_umary_ALU_12031_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645087;submitter_variant_call_id=ALU_umary_ALU_12031_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    5268422    5268422    20    5268422    5268422    2440:mobile_element_insertion:0    .    .    .    ID=12650049;Name=essv16127468;Alias=SVA_umary_SVA_779_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645093;submitter_variant_call_id=SVA_umary_SVA_779_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    5680117    5680117    20    5680117    5680117    2441:indel:0    .    .    .    ID=12656312;Name=essv16130596;Alias=PHASE3_V1_SV_2005_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645105;submitter_variant_call_id=PHASE3_V1_SV_2005_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    8443484    8443484    20    8443484    8443484    2442:mobile_element_insertion:0    .    .    .    ID=12664810;Name=essv16134310;Alias=ALU_umary_ALU_12048_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645167;submitter_variant_call_id=ALU_umary_ALU_12048_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    8670616    8670616    20    8670616    8670616    2443:mobile_element_insertion:0    .    .    .    ID=12668572;Name=essv16137144;Alias=ALU_umary_ALU_12050_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645174;submitter_variant_call_id=ALU_umary_ALU_12050_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    8816503    8816503    20    8816503    8816503    2444:mobile_element_insertion:0    .    .    .    ID=12672545;Name=essv16138408;Alias=ALU_umary_ALU_12052_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645176;submitter_variant_call_id=ALU_umary_ALU_12052_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    9149569    9149569    20    9149569    9149569    2445:indel:0    .    .    .    ID=12674324;Name=essv16139242;Alias=PHASE3_V1_SV_2012_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645181;submitter_variant_call_id=PHASE3_V1_SV_2012_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    9640982    9640982    20    9640982    9640982    2446:mobile_element_insertion:0    .    .    .    ID=12678772;Name=essv16141560;Alias=ALU_umary_ALU_12058_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645193;submitter_variant_call_id=ALU_umary_ALU_12058_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    13704160    13704160    20    13704160    13704160    2447:mobile_element_insertion:0    .    .    .    ID=12683714;Name=essv16143957;Alias=ALU_umary_ALU_12074_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645293;submitter_variant_call_id=ALU_umary_ALU_12074_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    15087672    15087672    20    15087672    15087672    2448:mobile_element_insertion:0    .    .    .    ID=12687832;Name=essv16145773;Alias=ALU_umary_ALU_12081_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645361;submitter_variant_call_id=ALU_umary_ALU_12081_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    15711536    15711536    20    15711536    15711536    2449:mobile_element_insertion:0    .    .    .    ID=12692800;Name=essv16148250;Alias=ALU_umary_ALU_12088_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645381;submitter_variant_call_id=ALU_umary_ALU_12088_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    15711605    15711605    20    15712436    15712436    2450:copy_number_loss:831    .    .    .    ID=12694772;Name=essv16149953;Alias=BI_GS_DEL1_B1_P2748_679_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645382;Start_range=15711547,15711665;End_range=15712378,15712496;submitter_variant_call_id=BI_GS_DEL1_B1_P2748_679_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    16830805    16830805    20    16830805    16830805    2451:mobile_element_insertion:0    .    .    .    ID=12701725;Name=essv16153386;Alias=ALU_umary_ALU_12102_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645416;submitter_variant_call_id=ALU_umary_ALU_12102_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    20095952    20095952    20    20095952    20095952    2452:mobile_element_insertion:0    .    .    .    ID=12707691;Name=essv16155457;Alias=ALU_umary_ALU_12115_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645469;submitter_variant_call_id=ALU_umary_ALU_12115_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    22097665    22097665    20    22097665    22097665    2453:indel:0    .    .    .    ID=12714633;Name=essv16159477;Alias=PHASE3_V1_SV_2022_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645499;submitter_variant_call_id=PHASE3_V1_SV_2022_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    23103316    23103316    20    23103617    23103617    2454:copy_number_loss:301    .    .    .    ID=12720112;Name=essv16162325;Alias=BI_GS_DEL1_B1_P2756_113_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645517;Start_range=23103317,23103317;End_range=23103618,23103618;submitter_variant_call_id=BI_GS_DEL1_B1_P2756_113_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    24903695    24903695    20    24904413    24904413    2455:copy_number_loss:718    .    .    .    ID=12727106;Name=essv16165727;Alias=BI_GS_DEL1_B2_P2757_793_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645572;Start_range=24903696,24903696;End_range=24904414,24904414;submitter_variant_call_id=BI_GS_DEL1_B2_P2757_793_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    26092754    26092754    20    26094313    26094313    2456:copy_number_loss:1559    .    .    .    ID=12731403;Name=essv16167302;Alias=BI_GS_DEL1_B1_P2759_12_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645608;Start_range=26092755,26092755;End_range=26094314,26094314;submitter_variant_call_id=BI_GS_DEL1_B1_P2759_12_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    26190973    26190973    20    26190973    26190973    2457:mobile_element_insertion:0    .    .    .    ID=12732911;Name=essv16168047;Alias=ALU_umary_ALU_12132_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645614;submitter_variant_call_id=ALU_umary_ALU_12132_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    26260599    26260599    20    26261801    26261801    2458:copy_number_loss:1202    .    .    .    ID=12734377;Name=essv16169327;Alias=BI_GS_DEL1_B4_P2759_33_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645622;Start_range=26260595,26260605;End_range=26261797,26261807;submitter_variant_call_id=BI_GS_DEL1_B4_P2759_33_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    26297586    26297586    20    26302709    26302709    2459:copy_number_loss:5123    .    .    .    ID=12738706;Name=essv16171221;Alias=EM_DL_DEL58265_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645626;Start_range=26297437,26297737;End_range=26302560,26302860;submitter_variant_call_id=EM_DL_DEL58265_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    31327344    31327344    20    31328019    31328019    2460:copy_number_loss:675    .    .    .    ID=12745404;Name=essv16174540;Alias=BI_GS_DEL1_B1_P2764_255_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645670;Start_range=31327345,31327345;End_range=31328020,31328020;submitter_variant_call_id=BI_GS_DEL1_B1_P2764_255_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    31525528    31525528    20    31529405    31529405    2461:copy_number_loss:3877    .    .    .    ID=12746109;Name=essv16175240;Alias=UW_VH_2272_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645674;Start_range=31525104,31525529;End_range=31529406,31529764;submitter_variant_call_id=UW_VH_2272_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    37055109    37055109    20    37055814    37055814    2462:copy_number_loss:705    .    .    .    ID=12758530;Name=essv16180995;Alias=BI_GS_DEL1_B1_P2770_55_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645784;Start_range=37055110,37055110;End_range=37055815,37055815;submitter_variant_call_id=BI_GS_DEL1_B1_P2770_55_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    37256138    37256138    20    37256138    37256138    2463:indel:0    .    .    .    ID=12758868;Name=essv16181795;Alias=PHASE3_V1_SV_2031_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645788;submitter_variant_call_id=PHASE3_V1_SV_2031_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    37954728    37954728    20    37954728    37954728    2464:indel:0    .    .    .    ID=12761518;Name=essv16183403;Alias=PHASE3_V1_SV_2032_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645805;submitter_variant_call_id=PHASE3_V1_SV_2032_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    37967384    37967384    20    37967384    37967384    2465:indel:0    .    .    .    ID=12762447;Name=essv16184941;Alias=PHASE3_V1_SV_2033_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645806;submitter_variant_call_id=PHASE3_V1_SV_2033_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    38210681    38210681    20    38210681    38210681    2466:mobile_element_insertion:0    .    .    .    ID=12763616;Name=essv16185793;Alias=ALU_umary_ALU_12163_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645810;submitter_variant_call_id=ALU_umary_ALU_12163_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    40323438    40323438    20    40323438    40323438    2467:indel:0    .    .    .    ID=12772425;Name=essv16188325;Alias=PHASE3_V1_SV_2036_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3645846;submitter_variant_call_id=PHASE3_V1_SV_2036_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    41952105    41952105    20    41952105    41952105    2468:mobile_element_insertion:0    .    .    .    ID=12776784;Name=essv16190067;Alias=L1_umary_LINE1_2931_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645881;submitter_variant_call_id=L1_umary_LINE1_2931_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    42271861    42271861    20    42274587    42274587    2469:copy_number_loss:2726    .    .    .    ID=12779052;Name=essv16192015;Alias=EM_DL_DEL58706_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645885;Start_range=42271712,42272012;End_range=42274438,42274738;submitter_variant_call_id=EM_DL_DEL58706_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    42481287    42481287    20    42483774    42483774    2470:copy_number_loss:2487    .    .    .    ID=12780298;Name=essv16193325;Alias=UW_VH_10881_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3645897;Start_range=42480754,42481288;End_range=42483775,42484168;submitter_variant_call_id=UW_VH_10881_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    43305494    43305494    20    43305494    43305494    2471:mobile_element_insertion:0    .    .    .    ID=12781512;Name=essv16194229;Alias=SVA_umary_SVA_797_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645914;submitter_variant_call_id=SVA_umary_SVA_797_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    46183294    46183294    20    46183294    46183294    2472:mobile_element_insertion:0    .    .    .    ID=12792100;Name=essv16197260;Alias=SVA_umary_SVA_799_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3645972;submitter_variant_call_id=SVA_umary_SVA_799_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    50708382    50708382    20    50708382    50708382    2473:mobile_element_insertion:0    .    .    .    ID=12798332;Name=essv16200730;Alias=SVA_umary_SVA_804_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646083;submitter_variant_call_id=SVA_umary_SVA_804_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    50759192    50759192    20    50760917    50760917    2474:copy_number_loss:1725    .    .    .    ID=12798774;Name=essv16201512;Alias=BI_GS_DEL1_B2_P2783_462_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646084;Start_range=50759192,50759195;End_range=50760917,50760920;submitter_variant_call_id=BI_GS_DEL1_B2_P2783_462_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    52032233    52032233    20    52032233    52032233    2475:indel:0    .    .    .    ID=12801429;Name=essv16203839;Alias=PHASE3_V1_SV_2054_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646112;submitter_variant_call_id=PHASE3_V1_SV_2054_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    52646999    52646999    20    52658029    52658029    2476:copy_number_loss:11030    .    .    .    ID=12806265;Name=essv16206095;Alias=UW_VH_10153_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646133;Start_range=52646605,52647000;End_range=52658030,52658247;submitter_variant_call_id=UW_VH_10153_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    53761849    53761849    20    53761849    53761849    2477:mobile_element_insertion:0    .    .    .    ID=12812500;Name=essv16209953;Alias=ALU_umary_ALU_12214_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646156;submitter_variant_call_id=ALU_umary_ALU_12214_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    54434517    54434517    20    54440715    54440715    2478:copy_number_loss:6198    .    .    .    ID=12818715;Name=essv16212642;Alias=YL_CN_PEL_4029_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646176;Start_range=54433518,54435018;End_range=54440216,54441716;submitter_variant_call_id=YL_CN_PEL_4029_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    54963149    54963149    20    54963149    54963149    2479:indel:0    .    .    .    ID=12820243;Name=essv16215038;Alias=PHASE3_V1_SV_2057_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646185;submitter_variant_call_id=PHASE3_V1_SV_2057_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    55148174    55148174    20    55148174    55148174    2480:indel:0    .    .    .    ID=12826489;Name=essv16217740;Alias=PHASE3_V1_SV_2060_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646194;submitter_variant_call_id=PHASE3_V1_SV_2060_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    56079180    56079180    20    56080565    56080565    2481:copy_number_loss:1385    .    .    .    ID=12830740;Name=essv16218910;Alias=UW_VH_3086_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646212;Start_range=56078890,56079181;End_range=56080566,56080820;submitter_variant_call_id=UW_VH_3086_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    61304236    61304236    20    61305143    61305143    2482:copy_number_loss:907    .    .    .    ID=12839695;Name=essv16221480;Alias=UW_VH_1255_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646294;Start_range=61303837,61304237;End_range=61305144,61305744;submitter_variant_call_id=UW_VH_1255_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    61724536    61724536    20    61725819    61725819    2483:copy_number_loss:1283    .    .    .    ID=12841783;Name=essv16223955;Alias=YL_CN_ESN_4121_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646302;Start_range=61723537,61725037;End_range=61725320,61726820;submitter_variant_call_id=YL_CN_ESN_4121_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    61724700    61724700    20    61725600    61725600    2484:copy_number_loss:900    .    .    .    ID=12844356;Name=essv16226192;Alias=BI_GS_DEL1_B1_P2794_457_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646303;Start_range=61724701,61724701;End_range=61725601,61725601;submitter_variant_call_id=BI_GS_DEL1_B1_P2794_457_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    61789812    61789812    20    61789812    61789812    2485:indel:0    .    .    .    ID=12846730;Name=essv16228519;Alias=PHASE3_V1_SV_2066_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646306;submitter_variant_call_id=PHASE3_V1_SV_2066_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    62072497    62072497    20    62072497    62072497    2486:mobile_element_insertion:0    .    .    .    ID=12849294;Name=essv16230571;Alias=ALU_umary_ALU_12241_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646318;submitter_variant_call_id=ALU_umary_ALU_12241_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    62267509    62267509    20    62268020    62268020    2487:copy_number_loss:511    .    .    .    ID=12851806;Name=essv16231996;Alias=BI_GS_DEL1_B3_P2795_12_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646322;Start_range=62267490,62267530;End_range=62268001,62268041;submitter_variant_call_id=BI_GS_DEL1_B3_P2795_12_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
20    62597374    62597374    20    62597374    62597374    2488:indel:0    .    .    .    ID=12853610;Name=essv16233883;Alias=PHASE3_V1_SV_2068_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646331;submitter_variant_call_id=PHASE3_V1_SV_2068_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
20    62909059    62909059    20    62909059    62909059    2489:indel:0    .    .    .    ID=12855798;Name=essv16235177;Alias=PHASE3_V1_SV_2070_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646342;submitter_variant_call_id=PHASE3_V1_SV_2070_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    9495847    9495847    21    9495847    9495847    2490:mobile_element_insertion:0    .    .    .    ID=12874601;Name=essv16237710;Alias=L1_umary_LINE1_2948_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646347;submitter_variant_call_id=L1_umary_LINE1_2948_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    10743282    10743282    21    10743282    10743282    2491:mobile_element_insertion:0    .    .    .    ID=12884454;Name=essv16239872;Alias=L1_umary_LINE1_2950_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646358;submitter_variant_call_id=L1_umary_LINE1_2950_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    10945864    10945864    21    10990762    10990762    2492:copy_number_gain:44898    .    .    .    ID=12887930;Name=essv16242146;Alias=DUP_gs_CNV_21_10945865_10990763_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3646363;submitter_variant_call_id=DUP_gs_CNV_21_10945865_10990763_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    10992013    10992013    21    10999733    10999733    2493:copy_number_gain:7720    .    .    .    ID=12890524;Name=essv16244732;Alias=DUP_gs_CNV_21_10992014_10999734_A1_NA12878;variant_call_so_id=SO:0001742;parent=esv3646366;submitter_variant_call_id=DUP_gs_CNV_21_10992014_10999734_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    11054307    11054307    21    11054307    11054307    2494:mobile_element_insertion:0    .    .    .    ID=12893697;Name=essv16246968;Alias=L1_umary_LINE1_2953_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646369;submitter_variant_call_id=L1_umary_LINE1_2953_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    14390196    14390196    21    14390196    14390196    2495:mobile_element_insertion:0    .    .    .    ID=12912792;Name=essv16249353;Alias=L1_umary_LINE1_2955_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646373;submitter_variant_call_id=L1_umary_LINE1_2955_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    14415001    14415001    21    14415001    14415001    2496:mobile_element_insertion:0    .    .    .    ID=12913793;Name=essv16251359;Alias=ALU_umary_ALU_12260_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646375;submitter_variant_call_id=ALU_umary_ALU_12260_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    14742954    14742954    21    14742954    14742954    2497:mobile_element_insertion:0    .    .    .    ID=12919516;Name=essv16254915;Alias=ALU_umary_ALU_12263_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646386;submitter_variant_call_id=ALU_umary_ALU_12263_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    14981353    14981353    21    15016528    15016528    2498:copy_number_loss:35175    .    .    .    ID=12923671;Name=essv16258940;Alias=BI_GS_CNV_21_14981354_15016529_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646398;Start_range=14980854,14981354;End_range=15016529,15017029;submitter_variant_call_id=BI_GS_CNV_21_14981354_15016529_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    15460777    15460777    21    15461861    15461861    2499:copy_number_loss:1084    .    .    .    ID=12930631;Name=essv16263398;Alias=UW_VH_5157_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646421;Start_range=15460247,15460778;End_range=15461862,15462231;submitter_variant_call_id=UW_VH_5157_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    15847470    15847470    21    15847470    15847470    2500:indel:0    .    .    .    ID=12932898;Name=essv16265710;Alias=PHASE3_V1_SV_2071_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646432;submitter_variant_call_id=PHASE3_V1_SV_2071_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    16461789    16461789    21    16461789    16461789    2501:mobile_element_insertion:0    .    .    .    ID=12934787;Name=essv16267163;Alias=ALU_umary_ALU_12273_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646441;submitter_variant_call_id=ALU_umary_ALU_12273_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    17937054    17937054    21    17937054    17937054    2502:indel:0    .    .    .    ID=12943611;Name=essv16270663;Alias=PHASE3_V1_SV_2075_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646459;submitter_variant_call_id=PHASE3_V1_SV_2075_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    18612377    18612377    21    18613697    18613697    2503:copy_number_loss:1320    .    .    .    ID=12948295;Name=essv16272527;Alias=SI_BD_17271_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646472;Start_range=18612106,18612460;End_range=18613613,18613970;submitter_variant_call_id=SI_BD_17271_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    19517312    19517312    21    19517312    19517312    2504:mobile_element_insertion:0    .    .    .    ID=12952729;Name=essv16276145;Alias=L1_umary_LINE1_2958_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646493;submitter_variant_call_id=L1_umary_LINE1_2958_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    23080616    23080616    21    23080618    23080618    2505:insertion:2    .    .    .    ID=12966506;Name=essv16280762;Alias=NUMT_umich_100_A1_NA12878;variant_call_so_id=SO:0000667;parent=esv3646582;Start_range=23080617,23080620;End_range=23080616,23080619;submitter_variant_call_id=NUMT_umich_100_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    23579569    23579569    21    23579569    23579569    2506:mobile_element_insertion:0    .    .    .    ID=12969707;Name=essv16282954;Alias=ALU_umary_ALU_12310_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646596;submitter_variant_call_id=ALU_umary_ALU_12310_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    23817358    23817358    21    23817358    23817358    2507:mobile_element_insertion:0    .    .    .    ID=12976082;Name=essv16286224;Alias=ALU_umary_ALU_12311_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646606;submitter_variant_call_id=ALU_umary_ALU_12311_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    24975501    24975501    21    24975501    24975501    2508:mobile_element_insertion:0    .    .    .    ID=12980388;Name=essv16288239;Alias=ALU_umary_ALU_12324_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646657;submitter_variant_call_id=ALU_umary_ALU_12324_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    25083440    25083440    21    25083440    25083440    2509:indel:0    .    .    .    ID=12983850;Name=essv16290226;Alias=PHASE3_V1_SV_2083_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646660;submitter_variant_call_id=PHASE3_V1_SV_2083_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    25710158    25710158    21    25710602    25710602    2510:copy_number_loss:444    .    .    .    ID=12988465;Name=essv16292534;Alias=BI_GS_DEL1_B5_P2822_767_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646683;Start_range=25710158,25710160;End_range=25710602,25710604;submitter_variant_call_id=BI_GS_DEL1_B5_P2822_767_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    26354236    26354236    21    26354236    26354236    2511:mobile_element_insertion:0    .    .    .    ID=12993248;Name=essv16294541;Alias=ALU_umary_ALU_12333_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646701;submitter_variant_call_id=ALU_umary_ALU_12333_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    26497430    26497430    21    26497430    26497430    2512:mobile_element_insertion:0    .    .    .    ID=12995851;Name=essv16296331;Alias=ALU_umary_ALU_12334_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646703;submitter_variant_call_id=ALU_umary_ALU_12334_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    27374094    27374094    21    27374745    27374745    2513:inversion:651    .    .    .    ID=13004060;Name=essv16299169;Alias=INV_delly_INV00066128_A1_NA12878;variant_call_so_id=SO:1000036;parent=esv3646727;Start_range=27374033,27374157;End_range=27374684,27374808;submitter_variant_call_id=INV_delly_INV00066128_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    29069185    29069185    21    29069185    29069185    2514:mobile_element_insertion:0    .    .    .    ID=13013040;Name=essv16306213;Alias=L1_umary_LINE1_2970_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646764;submitter_variant_call_id=L1_umary_LINE1_2970_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    30552223    30552223    21    30552587    30552587    2515:copy_number_loss:364    .    .    .    ID=13019264;Name=essv16309033;Alias=UW_VH_1264_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646796;Start_range=30551810,30552224;End_range=30552588,30553122;submitter_variant_call_id=UW_VH_1264_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    36011346    36011346    21    36011346    36011346    2516:indel:0    .    .    .    ID=13032939;Name=essv16313903;Alias=PHASE3_V1_SV_2089_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3646924;submitter_variant_call_id=PHASE3_V1_SV_2089_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    37014962    37014962    21    37015169    37015169    2517:copy_number_loss:207    .    .    .    ID=13035630;Name=essv16316680;Alias=BI_GS_DEL1_B1_P2834_15_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3646947;Start_range=37014963,37014963;End_range=37015170,37015170;submitter_variant_call_id=BI_GS_DEL1_B1_P2834_15_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    37237943    37237943    21    37237943    37237943    2518:mobile_element_insertion:0    .    .    .    ID=13038197;Name=essv16318287;Alias=ALU_umary_ALU_12400_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646954;submitter_variant_call_id=ALU_umary_ALU_12400_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    39004559    39004559    21    39004559    39004559    2519:mobile_element_insertion:0    .    .    .    ID=13040922;Name=essv16320409;Alias=ALU_umary_ALU_12411_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3646993;submitter_variant_call_id=ALU_umary_ALU_12411_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    42616479    42616479    21    42616479    42616479    2520:indel:0    .    .    .    ID=13048071;Name=essv16323011;Alias=PHASE3_V1_SV_2097_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647056;submitter_variant_call_id=PHASE3_V1_SV_2097_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    43350073    43350073    21    43353472    43353472    2521:copy_number_loss:3399    .    .    .    ID=13051400;Name=essv16324506;Alias=BI_GS_DEL1_B1_P2840_296_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647073;Start_range=43350072,43350077;End_range=43353471,43353476;submitter_variant_call_id=BI_GS_DEL1_B1_P2840_296_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    44712370    44712370    21    44712370    44712370    2522:indel:0    .    .    .    ID=13060845;Name=essv16326309;Alias=PHASE3_V1_SV_2099_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647101;submitter_variant_call_id=PHASE3_V1_SV_2099_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    44970402    44970402    21    44973397    44973397    2523:copy_number_loss:2995    .    .    .    ID=13063022;Name=essv16328253;Alias=SI_BD_17470_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647107;Start_range=44970075,44970453;End_range=44973273,44973726;submitter_variant_call_id=SI_BD_17470_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    45725942    45725942    21    45725942    45725942    2524:indel:0    .    .    .    ID=13072999;Name=essv16331384;Alias=PHASE3_V1_SV_2103_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647129;submitter_variant_call_id=PHASE3_V1_SV_2103_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    45827014    45827014    21    45827014    45827014    2525:indel:0    .    .    .    ID=13074141;Name=essv16333450;Alias=PHASE3_V1_SV_2104_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647131;submitter_variant_call_id=PHASE3_V1_SV_2104_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    46443175    46443175    21    46443175    46443175    2526:indel:0    .    .    .    ID=13082396;Name=essv16334899;Alias=PHASE3_V1_SV_2105_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647142;submitter_variant_call_id=PHASE3_V1_SV_2105_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    46528631    46528631    21    46528631    46528631    2527:indel:0    .    .    .    ID=13082790;Name=essv16336983;Alias=PHASE3_V1_SV_2106_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647143;submitter_variant_call_id=PHASE3_V1_SV_2106_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
21    46894620    46894620    21    46894620    46894620    2528:indel:0    .    .    .    ID=13086265;Name=essv16339585;Alias=PHASE3_V1_SV_2108_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647146;submitter_variant_call_id=PHASE3_V1_SV_2108_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    47042372    47042372    21    47042372    47042372    2529:mobile_element_insertion:0    .    .    .    ID=13088602;Name=essv16340843;Alias=ALU_umary_ALU_12436_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647148;submitter_variant_call_id=ALU_umary_ALU_12436_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
21    47388019    47388019    21    47389728    47389728    2530:copy_number_loss:1709    .    .    .    ID=13090396;Name=essv16342894;Alias=BI_GS_DEL1_B5_P2844_397_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647155;Start_range=47388020,47388021;End_range=47389729,47389730;submitter_variant_call_id=BI_GS_DEL1_B5_P2844_397_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    17026338    17026338    22    17027747    17027747    2531:copy_number_loss:1409    .    .    .    ID=13102390;Name=essv16350973;Alias=SI_BD_17531_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647190;Start_range=17026263,17026389;End_range=17027698,17027824;submitter_variant_call_id=SI_BD_17531_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    17705307    17705307    22    17705307    17705307    2532:mobile_element_insertion:0    .    .    .    ID=13111040;Name=essv16353370;Alias=ALU_umary_ALU_12442_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647211;submitter_variant_call_id=ALU_umary_ALU_12442_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    17770282    17770282    22    17779064    17779064    2533:copy_number_loss:8782    .    .    .    ID=13111687;Name=essv16354341;Alias=BI_GS_DEL1_B4_P2863_133_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647214;Start_range=17770267,17770299;End_range=17779049,17779081;submitter_variant_call_id=BI_GS_DEL1_B4_P2863_133_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    17863744    17863744    22    17863744    17863744    2534:indel:0    .    .    .    ID=13115087;Name=essv16356300;Alias=PHASE3_V1_SV_2112_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647217;submitter_variant_call_id=PHASE3_V1_SV_2112_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    18057746    18057746    22    18060453    18060453    2535:copy_number_loss:2707    .    .    .    ID=13118001;Name=essv16359888;Alias=EM_DL_DEL60768_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647224;Start_range=18057597,18057897;End_range=18060304,18060604;submitter_variant_call_id=EM_DL_DEL60768_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    18317916    18317916    22    18317916    18317916    2536:indel:0    .    .    .    ID=13119889;Name=essv16361612;Alias=PHASE3_V1_SV_2114_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647237;submitter_variant_call_id=PHASE3_V1_SV_2114_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    18977575    18977575    22    18977575    18977575    2537:indel:0    .    .    .    ID=13122331;Name=essv16363564;Alias=PHASE3_V1_SV_2116_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647252;submitter_variant_call_id=PHASE3_V1_SV_2116_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    19099905    19099905    22    19100606    19100606    2538:copy_number_loss:701    .    .    .    ID=13124999;Name=essv16364736;Alias=BI_GS_DEL1_B1_P2865_76_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647259;Start_range=19099901,19099911;End_range=19100602,19100612;submitter_variant_call_id=BI_GS_DEL1_B1_P2865_76_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    19947294    19947294    22    19947294    19947294    2539:indel:0    .    .    .    ID=13133376;Name=essv16369568;Alias=PHASE3_V1_SV_2117_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647283;submitter_variant_call_id=PHASE3_V1_SV_2117_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    20950622    20950622    22    20953842    20953842    2540:copy_number_loss:3220    .    .    .    ID=13137751;Name=essv16370706;Alias=BI_GS_DEL1_B5_P2866_441_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647297;Start_range=20950623,20950623;End_range=20953843,20953843;submitter_variant_call_id=BI_GS_DEL1_B5_P2866_441_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22380760    22380760    22    23244737    23244737    2541:copy_number_loss:863977    .    .    .    ID=13142812;Name=essv16371229;Alias=YL_CN_ESN_4239_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647333;Start_range=22379761,22381261;End_range=23244238,23245738;submitter_variant_call_id=YL_CN_ESN_4239_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22385769    22385769    22    22522623    22522623    2542:copy_number_loss:136854    .    .    .    ID=13142838;Name=essv16371268;Alias=YL_CN_CDX_3656_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647334;Start_range=22384770,22386270;End_range=22522124,22523624;submitter_variant_call_id=YL_CN_CDX_3656_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22385857    22385857    22    22600281    22600281    2543:copy_number_loss:214424    .    .    .    ID=13142868;Name=essv16371296;Alias=UW_VH_19654_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647335;Start_range=22385577,22385858;End_range=22600282,22600358;submitter_variant_call_id=UW_VH_19654_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22411639    22411639    22    22442278    22442278    2544:copy_number_loss:30639    .    .    .    ID=13142991;Name=essv16371324;Alias=DUP_gs_CNV_22_22411640_22442279_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647336;submitter_variant_call_id=DUP_gs_CNV_22_22411640_22442279_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22453472    22453472    22    22562313    22562313    2545:copy_number_loss:108841    .    .    .    ID=13143238;Name=essv16371399;Alias=YL_CN_CEU_5233_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647339;Start_range=22452473,22453973;End_range=22561814,22563314;submitter_variant_call_id=YL_CN_CEU_5233_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22456174    22456174    22    22522734    22522734    2546:copy_number_loss:66560    .    .    .    ID=13143268;Name=essv16371431;Alias=DUP_gs_CNV_22_22456175_22522735_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647340;submitter_variant_call_id=DUP_gs_CNV_22_22456175_22522735_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22509674    22509674    22    22558468    22558468    2547:copy_number_loss:48794    .    .    .    ID=13144632;Name=essv16372637;Alias=DUP_gs_CNV_22_22509675_22558469_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647343;submitter_variant_call_id=DUP_gs_CNV_22_22509675_22558469_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22517055    22517055    22    22599640    22599640    2548:copy_number_loss:82585    .    .    .    ID=13144681;Name=essv16372689;Alias=BI_GS_DEL1_B4_P2868_112_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647345;Start_range=22517024,22517088;End_range=22599609,22599673;submitter_variant_call_id=BI_GS_DEL1_B4_P2868_112_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22517060    22517060    22    22522500    22522500    2549:copy_number_loss:5440    .    .    .    ID=13144729;Name=essv16372726;Alias=SI_BD_17586_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647346;Start_range=22517011,22517111;End_range=22522451,22522551;submitter_variant_call_id=SI_BD_17586_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22534141    22534141    22    22534141    22534141    2550:mobile_element_insertion:0    .    .    .    ID=13145779;Name=essv16373752;Alias=ALU_umary_ALU_12449_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647347;submitter_variant_call_id=ALU_umary_ALU_12449_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22550525    22550525    22    22581384    22581384    2551:copy_number_loss:30859    .    .    .    ID=13146307;Name=essv16374262;Alias=DUP_gs_CNV_22_22550526_22581385_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647348;submitter_variant_call_id=DUP_gs_CNV_22_22550526_22581385_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22569644    22569644    22    22599116    22599116    2552:copy_number_loss:29472    .    .    .    ID=13146553;Name=essv16374329;Alias=BI_GS_DEL1_B1_P2868_441_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647350;Start_range=22569630,22569660;End_range=22599102,22599132;submitter_variant_call_id=BI_GS_DEL1_B1_P2868_441_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22582635    22582635    22    22686277    22686277    2553:copy_number_loss:103642    .    .    .    ID=13146911;Name=essv16374376;Alias=DUP_gs_CNV_22_22582636_22686278_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647351;submitter_variant_call_id=DUP_gs_CNV_22_22582636_22686278_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22677669    22677669    22    22707104    22707104    2554:copy_number_loss:29435    .    .    .    ID=13147275;Name=essv16374500;Alias=DUP_gs_CNV_22_22677670_22707105_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647355;submitter_variant_call_id=DUP_gs_CNV_22_22677670_22707105_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22716055    22716055    22    22738453    22738453    2555:copy_number_loss:22398    .    .    .    ID=13147628;Name=essv16374655;Alias=DUP_gs_CNV_22_22716056_22738454_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647360;submitter_variant_call_id=DUP_gs_CNV_22_22716056_22738454_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22732064    22732064    22    22783494    22783494    2556:copy_number_loss:51430    .    .    .    ID=13147679;Name=essv16374792;Alias=EM_DL_DEL61159_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647362;Start_range=22731915,22732215;End_range=22783345,22783645;submitter_variant_call_id=EM_DL_DEL61159_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22735501    22735501    22    22765708    22765708    2557:copy_number_loss:30207    .    .    .    ID=13147769;Name=essv16374903;Alias=BI_GS_CNV_22_22735502_22765709_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647363;Start_range=22735002,22735502;End_range=22765709,22766209;submitter_variant_call_id=BI_GS_CNV_22_22735502_22765709_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22768010    22768010    22    22790838    22790838    2558:copy_number_loss:22828    .    .    .    ID=13150375;Name=essv16375092;Alias=BI_GS_CNV_22_22768011_22790839_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647365;Start_range=22767511,22768011;End_range=22790839,22791339;submitter_variant_call_id=BI_GS_CNV_22_22768011_22790839_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22922739    22922739    22    22928687    22928687    2559:copy_number_loss:5948    .    .    .    ID=13153707;Name=essv16375690;Alias=BI_GS_DEL1_B2_P2868_580_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647371;Start_range=22922733,22922747;End_range=22928681,22928695;submitter_variant_call_id=BI_GS_DEL1_B2_P2868_580_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22943271    22943271    22    22973721    22973721    2560:copy_number_loss:30450    .    .    .    ID=13153960;Name=essv16375956;Alias=BI_GS_DEL1_B2_P2868_590_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647373;Start_range=22943260,22943285;End_range=22973710,22973735;submitter_variant_call_id=BI_GS_DEL1_B2_P2868_590_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    22956720    22956720    22    22959159    22959159    2561:copy_number_loss:2439    .    .    .    ID=13154007;Name=essv16376042;Alias=SI_BD_17592_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647374;Start_range=22956671,22956771;End_range=22959110,22959210;submitter_variant_call_id=SI_BD_17592_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    23101642    23101642    22    23247167    23247167    2562:copy_number_loss:145525    .    .    .    ID=13154303;Name=essv16376272;Alias=UW_VH_3690_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647377;Start_range=23101424,23101643;End_range=23247168,23247510;submitter_variant_call_id=UW_VH_3690_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    23103979    23103979    22    23103979    23103979    2563:indel:0    .    .    .    ID=13154910;Name=essv16377949;Alias=PHASE3_V1_SV_2119_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647378;submitter_variant_call_id=PHASE3_V1_SV_2119_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23165688    23165688    22    23247157    23247157    2564:copy_number_loss:81469    .    .    .    ID=13157805;Name=essv16378710;Alias=UW_VH_11270_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647379;Start_range=23165510,23165689;End_range=23247158,23247468;submitter_variant_call_id=UW_VH_11270_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    23199182    23199182    22    23247165    23247165    2565:copy_number_loss:47983    .    .    .    ID=13159307;Name=essv16380268;Alias=UW_VH_19628_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647381;Start_range=23199116,23199183;End_range=23247166,23247290;submitter_variant_call_id=UW_VH_19628_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23222532    23222532    22    23223273    23223273    2566:copy_number_loss:741    .    .    .    ID=13159586;Name=essv16380457;Alias=BI_GS_DEL1_B2_P2869_167_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647382;Start_range=23222526,23222540;End_range=23223267,23223281;submitter_variant_call_id=BI_GS_DEL1_B2_P2869_167_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23223446    23223446    22    23241897    23241897    2567:copy_number_loss:18451    .    .    .    ID=13159771;Name=essv16380731;Alias=YL_CN_ACB_4865_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647383;Start_range=23222447,23223947;End_range=23241398,23242898;submitter_variant_call_id=YL_CN_ACB_4865_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23223448    23223448    22    23236078    23236078    2568:copy_number_loss:12630    .    .    .    ID=13160021;Name=essv16381009;Alias=YL_CN_CEU_5245_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647384;Start_range=23222449,23223949;End_range=23235579,23237079;submitter_variant_call_id=YL_CN_CEU_5245_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23229706    23229706    22    23232879    23232879    2569:copy_number_loss:3173    .    .    .    ID=13160221;Name=essv16381190;Alias=BI_GS_DEL1_B3_P2869_16_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647385;Start_range=23229705,23229710;End_range=23232878,23232883;submitter_variant_call_id=BI_GS_DEL1_B3_P2869_16_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    23478402    23478402    22    23479633    23479633    2570:copy_number_loss:1231    .    .    .    ID=13161435;Name=essv16382056;Alias=EM_DL_DEL10656923_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647393;Start_range=23478253,23478553;End_range=23479484,23479784;submitter_variant_call_id=EM_DL_DEL10656923_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    23872685    23872685    22    23872685    23872685    2571:mobile_element_insertion:0    .    .    .    ID=13168103;Name=essv16383888;Alias=ALU_umary_ALU_12453_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647403;submitter_variant_call_id=ALU_umary_ALU_12453_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    24198504    24198504    22    24198504    24198504    2572:mobile_element_insertion:0    .    .    .    ID=13175960;Name=essv16387605;Alias=ALU_umary_ALU_12455_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647417;submitter_variant_call_id=ALU_umary_ALU_12455_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    24276430    24276430    22    24279230    24279230    2573:copy_number_loss:2800    .    .    .    ID=13178504;Name=essv16389663;Alias=UW_VH_1651_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647420;Start_range=24275976,24276431;End_range=24279231,24279719;submitter_variant_call_id=UW_VH_1651_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    24326712    24326712    22    24333475    24333475    2574:copy_number_loss:6763    .    .    .    ID=13180519;Name=essv16391462;Alias=DUP_gs_CNV_22_24326713_24333476_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647421;submitter_variant_call_id=DUP_gs_CNV_22_24326713_24333476_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    28776051    28776051    22    28776051    28776051    2575:mobile_element_insertion:0    .    .    .    ID=13190212;Name=essv16397555;Alias=ALU_umary_ALU_12467_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647509;submitter_variant_call_id=ALU_umary_ALU_12467_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    29695998    29695998    22    29695998    29695998    2576:indel:0    .    .    .    ID=13197900;Name=essv16400426;Alias=PHASE3_V1_SV_2128_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647530;submitter_variant_call_id=PHASE3_V1_SV_2128_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    31776448    31776448    22    31780069    31780069    2577:copy_number_loss:3621    .    .    .    ID=13202987;Name=essv16403675;Alias=DUP_gs_CNV_22_31776449_31780070_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647583;submitter_variant_call_id=DUP_gs_CNV_22_31776449_31780070_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    33520346    33520346    22    33520346    33520346    2578:indel:0    .    .    .    ID=13209753;Name=essv16406369;Alias=PHASE3_V1_SV_2134_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647616;submitter_variant_call_id=PHASE3_V1_SV_2134_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    34430611    34430611    22    34430611    34430611    2579:mobile_element_insertion:0    .    .    .    ID=13215651;Name=essv16410256;Alias=ALU_umary_ALU_12486_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647639;submitter_variant_call_id=ALU_umary_ALU_12486_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    35645162    35645162    22    35646141    35646141    2580:copy_number_loss:979    .    .    .    ID=13220402;Name=essv16412576;Alias=BI_GS_DEL1_B1_P2881_680_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647661;Start_range=35645163,35645163;End_range=35646142,35646142;submitter_variant_call_id=BI_GS_DEL1_B1_P2881_680_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    37143061    37143061    22    37147889    37147889    2581:copy_number_loss:4828    .    .    .    ID=13232106;Name=essv16416475;Alias=YL_CN_GIH_3320_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647693;Start_range=37142062,37143562;End_range=37147390,37148890;submitter_variant_call_id=YL_CN_GIH_3320_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    37143104    37143104    22    37144404    37144404    2582:copy_number_loss:1300    .    .    .    ID=13233940;Name=essv16418459;Alias=SI_BD_17690_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647694;Start_range=37142921,37143155;End_range=37144334,37144589;submitter_variant_call_id=SI_BD_17690_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    39009419    39009419    22    39009419    39009419    2583:indel:0    .    .    .    ID=13245431;Name=essv16423185;Alias=PHASE3_V1_SV_2142_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647738;submitter_variant_call_id=PHASE3_V1_SV_2142_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    40403250    40403250    22    40403250    40403250    2584:mobile_element_insertion:0    .    .    .    ID=13254399;Name=essv16428730;Alias=ALU_umary_ALU_12506_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647770;submitter_variant_call_id=ALU_umary_ALU_12506_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    40794209    40794209    22    40795233    40795233    2585:copy_number_loss:1024    .    .    .    ID=13255125;Name=essv16429725;Alias=BI_GS_DEL1_B1_P2886_694_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647775;Start_range=40794210,40794210;End_range=40795234,40795234;submitter_variant_call_id=BI_GS_DEL1_B1_P2886_694_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    42523948    42523948    22    42533890    42533890    2586:copy_number_gain:9942    .    .    .    ID=13257603;Name=essv16430882;Alias=DUP_gs_CNV_22_42523949_42533891_A2_NA12878;variant_call_so_id=SO:0001742;parent=esv3647810;submitter_variant_call_id=DUP_gs_CNV_22_42523949_42533891_A2_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    43101429    43101429    22    43102188    43102188    2587:copy_number_loss:759    .    .    .    ID=13262729;Name=essv16432963;Alias=BI_GS_DEL1_B3_P2889_8_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647838;Start_range=43101402,43101458;End_range=43102161,43102217;submitter_variant_call_id=BI_GS_DEL1_B3_P2889_8_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    43346416    43346416    22    43346416    43346416    2588:indel:0    .    .    .    ID=13265541;Name=essv16434741;Alias=PHASE3_V1_SV_2147_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647846;submitter_variant_call_id=PHASE3_V1_SV_2147_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    44324604    44324604    22    44324604    44324604    2589:mobile_element_insertion:0    .    .    .    ID=13268598;Name=essv16436493;Alias=L1_umary_LINE1_2991_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3647882;submitter_variant_call_id=L1_umary_LINE1_2991_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    45252400    45252400    22    45253089    45253089    2590:copy_number_loss:689    .    .    .    ID=13275040;Name=essv16438988;Alias=BI_GS_DEL1_B5_P2891_217_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3647910;Start_range=45252401,45252402;End_range=45253090,45253091;submitter_variant_call_id=BI_GS_DEL1_B5_P2891_217_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    45321906    45321906    22    45321906    45321906    2591:indel:0    .    .    .    ID=13278006;Name=essv16440149;Alias=PHASE3_V1_SV_2150_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647913;submitter_variant_call_id=PHASE3_V1_SV_2150_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.
22    45678068    45678068    22    45678068    45678068    2592:indel:0    .    .    .    ID=13281867;Name=essv16442732;Alias=PHASE3_V1_SV_2151_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647924;submitter_variant_call_id=PHASE3_V1_SV_2151_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    48205756    48205756    22    48205756    48205756    2593:indel:0    .    .    .    ID=13293866;Name=essv16449343;Alias=PHASE3_V1_SV_2156_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3647998;submitter_variant_call_id=PHASE3_V1_SV_2156_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    49077604    49077604    22    49077888    49077888    2594:copy_number_loss:284    .    .    .    ID=13300787;Name=essv16450668;Alias=BI_GS_DEL1_B1_P2895_53_A1_NA12878;variant_call_so_id=SO:0001743;parent=esv3648019;Start_range=49077604,49077607;End_range=49077888,49077891;submitter_variant_call_id=BI_GS_DEL1_B1_P2895_53_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    49344313    49344313    22    49344313    49344313    2595:indel:0    .    .    .    ID=13304647;Name=essv16452283;Alias=PHASE3_V1_SV_2158_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3648024;submitter_variant_call_id=PHASE3_V1_SV_2158_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    49425472    49425472    22    49425472    49425472    2596:mobile_element_insertion:0    .    .    .    ID=13307760;Name=essv16454671;Alias=SVA_umary_SVA_833_A1_NA12878;variant_call_so_id=SO:0001837;parent=esv3648034;submitter_variant_call_id=SVA_umary_SVA_833_A1_NA12878;sample_name=NA12878;Zygosity=heterozygous;Variant_seq=.
22    50250273    50250273    22    50250273    50250273    2597:indel:0    .    .    .    ID=13317588;Name=essv16459544;Alias=PHASE3_V1_SV_2161_A1_NA12878;variant_call_so_id=SO:1000032;parent=esv3648074;submitter_variant_call_id=PHASE3_V1_SV_2161_A1_NA12878;sample_name=NA12878;Zygosity=homozygous;Variant_seq=.