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BlueBrain/eFEL

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Showing 91 of 91 total issues

Function git_versions_from_keywords has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.
Open

def git_versions_from_keywords(
    keywords: Dict[str, str],
    tag_prefix: str,
    verbose: bool,
) -> Dict[str, Any]:
Severity: Minor
Found in efel/_version.py - About 2 hrs to fix

Function get_versions has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.
Open

def get_versions(verbose: bool = False) -> Dict[str, Any]:
    """Get the project version from whatever source is available.
 
    Returns dict with two keys: 'version' and 'full'.
    """
Severity: Minor
Found in versioneer.py - About 2 hrs to fix

Function run_command has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
Open

def run_command(
    commands: List[str],
    args: List[str],
    cwd: Optional[str] = None,
    verbose: bool = False,
Severity: Minor
Found in efel/_version.py - About 2 hrs to fix

Function run_command has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
Open

def run_command(
    commands: List[str],
    args: List[str],
    cwd: Optional[str] = None,
    verbose: bool = False,
Severity: Minor
Found in versioneer.py - About 2 hrs to fix

Function git_get_keywords has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

def git_get_keywords(versionfile_abs: str) -> Dict[str, str]:
    """Extract version information from the given file."""
    # the code embedded in _version.py can just fetch the value of these
    # keywords. When used from setup.py, we don't want to import _version.py,
    # so we do it with a regexp instead. This function is not used from
Severity: Minor
Found in efel/_version.py - About 2 hrs to fix

Function git_get_keywords has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

def git_get_keywords(versionfile_abs: str) -> Dict[str, str]:
    """Extract version information from the given file."""
    # the code embedded in _version.py can just fetch the value of these
    # keywords. When used from setup.py, we don't want to import _version.py,
    # so we do it with a regexp instead. This function is not used from
Severity: Minor
Found in versioneer.py - About 2 hrs to fix

Function calculate_features has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.
Open

def calculate_features(
    waveforms,
    sampling_frequency,
    upsample=None,
    feature_names=None,
Severity: Minor
Found in efel/pyfeatures/extrafeats.py - About 2 hrs to fix

Function initburst_sahp has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.
Open

def initburst_sahp() -> np.ndarray | None:
    """SlowAHP voltage after initial burst."""
    # Required cpp features
    voltage = get_cpp_feature("voltage")
    time = get_cpp_feature("time")
Severity: Minor
Found in efel/pyfeatures/isi.py - About 2 hrs to fix

Function do_vcs_install has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.
Open

def do_vcs_install(versionfile_source: str, ipy: Optional[str]) -> None:
    """Git-specific installation logic for Versioneer.
 
    For Git, this means creating/changing .gitattributes to mark _version.py
    for export-subst keyword substitution.
Severity: Minor
Found in versioneer.py - About 1 hr to fix

Function render_pep440_branch has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
Open

def render_pep440_branch(pieces: Dict[str, Any]) -> str:
    """TAG[[.dev0]+DISTANCE.gHEX[.dirty]] .
 
    The ".dev0" means not master branch. Note that .dev0 sorts backwards
    (a feature branch will appear "older" than the master branch).
Severity: Minor
Found in efel/_version.py - About 1 hr to fix

Function output_graphivz has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
Open

def output_graphivz(feature_library, filename, draw_dependencies=False,
                    output_dot=False):
    '''create a PNG at filename of the dependencies'''
    try:
        import pygraphviz
Severity: Minor
Found in utils/efel_graph_dependency.py - About 1 hr to fix

Function render_pep440_branch has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
Open

def render_pep440_branch(pieces: Dict[str, Any]) -> str:
    """TAG[[.dev0]+DISTANCE.gHEX[.dirty]] .
 
    The ".dev0" means not master branch. Note that .dev0 sorts backwards
    (a feature branch will appear "older" than the master branch).
Severity: Minor
Found in versioneer.py - About 1 hr to fix

Function render_pep440_post_branch has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
Open

def render_pep440_post_branch(pieces: Dict[str, Any]) -> str:
    """TAG[.postDISTANCE[.dev0]+gHEX[.dirty]] .
 
    The ".dev0" means not master branch.
 
 
Severity: Minor
Found in versioneer.py - About 1 hr to fix

Function render_pep440_post_branch has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
Open

def render_pep440_post_branch(pieces: Dict[str, Any]) -> str:
    """TAG[.postDISTANCE[.dev0]+gHEX[.dirty]] .
 
    The ".dev0" means not master branch.
 
 
Severity: Minor
Found in efel/_version.py - About 1 hr to fix

Function depol_block has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

def depol_block():
    """Check for a depolarization block"""
 
    # if there is no depolarization block return 1
    # if there is a depolarization block return None
Severity: Minor
Found in efel/pyfeatures/pyfeatures.py - About 1 hr to fix

Function _get_feature_values_serial has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

def _get_feature_values_serial(
    trace_featurenames: tuple[dict, list[str], bool]
) -> dict:
    """Single process of get_feature_values."""
    trace, feature_names, raise_warnings = trace_featurenames
Severity: Minor
Found in efel/api.py - About 1 hr to fix

Function halfwidth has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

def halfwidth(
    waveforms,
    sampling_frequency,
    return_idx=False
):
Severity: Minor
Found in efel/pyfeatures/extrafeats.py - About 1 hr to fix

Function scan_setup_py has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

def scan_setup_py() -> int:
    """Validate the contents of setup.py against Versioneer's expectations."""
    found = set()
    setters = False
    errors = 0
Severity: Minor
Found in versioneer.py - About 1 hr to fix

Function get_feature_library has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
Open

def get_feature_library(dependency_file):
    '''parse the `dependency_file` and gather all the features and their dependencies'''
    feature_library = defaultdict(dict)
    with open(dependency_file) as fd:
        for line in fd:
Severity: Minor
Found in utils/efel_graph_dependency.py - About 1 hr to fix

Function load_neo_file has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
Open

def load_neo_file(file_name: str, stim_start=None, stim_end=None, **kwargs) -> list:
    """
    Loads a data file using neo and converts it for eFEL readability.
 
    Args:
Severity: Minor
Found in efel/io.py - About 1 hr to fix
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