KarrLab/datanator

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NameLines of codeMaintainabilityTest coverage
datanator/data_source/brenda/reaction.py85
C
1 day
C
76%
datanator/data_source/metabolite_nosql.py118
C
1 day
F
28%
datanator/util/rna_halflife_util.py122
C
1 day
F
41%
datanator/data_source/protein_localization/parse_psortdb_negative_wo_outer_membrane.py57
C
1 day
datanator/data_source/corum_nosql.py208
C
1 day
A
90%
datanator/util/calc_tanimoto.py196
C
1 day
F
24%
datanator/data_source/protein_localization/justin_parse_subcellular_location.py97
C
7 hrs
datanator/data_source/rna_modification/rna_modification.py92
B
6 hrs
datanator/data_source/protein_localization/justin_parseGramPositiveJSONSchema.py47
B
6 hrs
datanator/data_source/process_rna_seq/core.py114
B
5 hrs
F
0%
datanator/data_source/kegg_org_code.py146
B
5 hrs
F
38%
datanator/data_source/rna_halflife/doi_10_1091_mbc_e11_01_0028.py97
B
5 hrs
datanator/data_source/protein_localization/experimental.py53
B
4 hrs
datanator/parse_metabolite_concentration.py54
B
4 hrs
F
0%
datanator/data_source/ec.py104
B
4 hrs
F
53%
datanator/util/rna_seq_util.py84
A
3 hrs
C
79%
datanator/data_source/rna_halflife/back_fill_gene_name.py18
A
3 hrs
datanator/data_source/sabio_compound.py63
A
3 hrs
F
0%
datanator/util/file_util.py207
A
2 hrs
A
95%
datanator/data_source/protein_modification/10_1093_nar_gkw1075.py68
A
2 hrs
datanator/data_source/protein_localization/justin_10.1038_msb.2011.38.py149
A
1 hr
datanator/util/mongo_util.py67
A
1 hr
F
59%
datanator/util/taxonomy_util.py158
A
1 hr
A
92%
datanator/data_source/metabolite_concentration/query_demo.py55
A
45 mins
D
63%
datanator/data_source/protein_localization/database_demo.py37
A
35 mins
datanator/util/reaction_util.py45
A
25 mins
A
96%
datanator/__init__.py1
A
0 mins
A
100%
datanator/_version.py1
A
0 mins
A
100%
datanator/config/__init__.py1
A
0 mins
A
100%
datanator/config/core.py55
A
0 mins
F
47%
datanator/core/__init__.py0
A
0 mins
F
0%
datanator/data_source/__init__.py0
A
0 mins
F
0%
datanator/data_source/array_express_tools/__init__.py1
A
0 mins
F
0%
datanator/data_source/brenda/kinetic_constants.py20
A
0 mins
datanator/data_source/builds/__init__.py0
A
0 mins
F
0%
datanator/data_source/builds/full.py14
A
0 mins
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0%
datanator/data_source/builds/med.py13
A
0 mins
F
0%
datanator/data_source/builds/test.py13
A
0 mins
F
0%
datanator/data_source/builds/test_log.py11
A
0 mins
F
0%
datanator/data_source/process_rna_seq/__init__.py2
A
0 mins
F
0%
datanator/data_source/process_rna_seq/download_cdna.py33
A
0 mins
F
0%
datanator/data_source/sqlite_to_json.py47
A
0 mins
F
0%
datanator/schema_2/__init__.py0
A
0 mins
F
0%
datanator/schema_2/migrate_corum.py68
A
0 mins
F
0%
datanator/schema_2/migrate_ec.py64
A
0 mins
F
0%
datanator/schema_2/migrate_metabolite_concentration.py72
A
0 mins
F
0%
datanator/schema_2/migrate_metabolites_meta.py82
A
0 mins
F
0%
datanator/schema_2/migrate_taxon_tree.py96
A
0 mins
F
0%
datanator/schema_2/migrate_uniprot.py89
A
0 mins
F
0%
datanator/util/__init__.py7
A
0 mins
A
100%