KarrLab/datanator

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NameLines of codeMaintainabilityTest coverage
datanator/data_source/sabio_rk.py1,466
F
3 wks
B
89%
datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py138
F
2 wks
datanator/data_source/protein_localization/victoria_insert_archaea.py141
F
2 wks
datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py354
F
1 wk
datanator/data_source/protein_modification/pro.py605
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py289
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_mouse_global_quantification.py296
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_yeast_global_proteome_turnover.py316
F
1 wk
datanator/data_source/sabio_rk_nosql.py1,090
F
1 wk
D
65%
datanator/data_source/modomics.py222
F
1 wk
F
0%
datanator/data_source/metabolite_concentration/doi_10_1038_nchembio_2077.py347
F
6 days
F
22%
datanator/data_source/protein_localization/victoria_insert_protein_atlas.py247
F
6 days
datanator/data_source/taxon_tree.py275
F
5 days
B
80%
datanator/data_source/metabolites_meta_collection.py244
F
5 days
F
37%
datanator/data_source/sabio_rk_json_mongo.py652
F
5 days
F
0%
datanator/core/data_model.py490
F
4 days
A
92%
datanator/schema_2/transform.py462
F
4 days
F
31%
datanator/data_source/pax_nosql.py204
F
4 days
B
82%
datanator/elasticsearch_kl/batch_load.py238
F
4 days
F
37%
datanator/schema_2/transform_metabolites_meta.py235
F
3 days
F
12%
datanator/data_source/uniprot_nosql.py301
F
3 days
F
34%
datanator/data_source/rna_localization/victoria_parse_LncAtlas.py223
F
3 days
datanator/data_source/brenda/core.py365
F
3 days
datanator/data_source/rna_halflife/doi_10_1186_gb_2012_13_4_r30.py151
F
3 days
D
68%
datanator/data_source/kegg_reaction_class.py170
F
3 days
F
47%
datanator/data_source/rna_halflife/doi_10_1186_s12864_016_3219_8.py232
D
3 days
C
74%
datanator/data_source/protein_half_lives/victoria_parse_quantification_budding_yeast_proteome.py162
D
3 days
datanator/data_source/protein_localization/victoria_insert_experimental_protein.py168
D
3 days
datanator/data_source/rna_halflife/doi_10_1093_nar_gks1019.py126
D
2 days
D
60%
datanator/data_source/rna_halflife/doi_10_1093_nar_gkt1150.py99
D
2 days
F
29%
datanator/data_source/gene_ortholog.py176
D
2 days
F
29%
datanator/core/data_source.py480
D
2 days
F
39%
datanator/data_source/kegg_orthology.py238
D
2 days
F
35%
datanator/data_source/rna_halflife/doi_10_1101_gr_131037_111.py138
D
2 days
D
65%
datanator/data_source/rna_halflife/order_by_ko.py202
D
2 days
F
28%
datanator/data_source/protein_aggregate.py212
D
2 days
F
19%
datanator/data_source/rna_halflife/doi_10_1371_journal_pone_0059059.py115
D
2 days
F
29%
datanator/util/base26.py39
D
2 days
A
100%
datanator/data_source/protein_localization/parse_psortdb_experimental.py80
D
2 days
datanator/data_source/process_rna_seq/command_line_core.py117
D
1 day
F
0%
datanator/data_source/array_express_tools/ensembl_tools.py234
D
1 day
F
0%
datanator/util/index_collection.py131
D
1 day
F
25%
datanator/schema_2/transform_metabolite_concentrations.py145
D
1 day
A
100%
datanator/data_source/intact_nosql.py196
C
1 day
A
93%
datanator/__main__.py593
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1 day
D
61%
datanator/data_source/rna_halflife/doi_10_1038_srep01318.py124
C
1 day
C
76%
datanator/data_source/rna_halflife/doi_10_1016_j_cell_2013_12_026.py87
C
1 day
datanator/data_source/sabio_reaction.py214
C
1 day
F
47%
datanator/util/chem_util.py110
C
1 day
C
76%
datanator/util/molecule_util.py284
C
1 day
B
88%