KarrLab/datanator

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datanator/util/build_util.py48
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datanator/util/constants.py23
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datanator/util/warning_util.py17
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docs/conf.py104
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scripts/quilt_backup.py15
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setup.py57
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.circleci/config.yml
.circleci/requirements.txt
.gitignore
.karr_lab_build_utils.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
LICENSE-DATA
LICENSE-DATABASE-STRUCTURE
LICENSE-THIRD-PARTY-DATA
MANIFEST.in
README.md
datanator/config/core.default.cfg
datanator/config/core.schema.cfg
datanator/data_source/array_express_excluded_dataset_ids.txt
datanator/data_source/array_express_tools/find_cdna_url.txt
datanator/data_source/array_express_tools/kegg_taxon_prokaryotes.txt
datanator/data_source/array_express_tools/taxon_exceptions.txt
datanator/data_source/kegg_taxon_prokaryotes.txt
datanator/data_source/protein_modification/pro.in.tsv
datanator/data_source/protein_modification/pro.monomers.csv
datanator/data_source/user_data/InputTemplate.xlsx
datanator/data_source/user_data/RNA-Seq_Experiment_Template/RNA-SeqMetadataTemplate.xlsx
datanator/data_source/user_data/RNA-Seq_Experiment_Template/samples/ProcessedRNA-SeqTemplate.xlsx
datanator/util/es.py.bak
docker-compose.yml
docker_builds/Flaskoffline
docker_builds/Karrlabdatanator
docker_builds/Mongocurl
docs/about.rst
docs/apm-server.yml
docs/brenda/Reactions_BKMS.tar.gz
docs/deployment.rst
docs/enzyme.dat
docs/filebeat.docker.yml
docs/index.rst
docs/installation.rst
docs/intro.rst
docs/metabolite_concentration/41589_2016_BFnchembio2077_MOESM585_ESM.xlsx
docs/metabolite_concentration/41589_2016_BFnchembio2077_MOESM586_ESM.xlsx
docs/metabolite_concentration/aaf2786-Hackett-SM-table-S9.xls
docs/metabolite_concentration/compounds.tsv.gz
docs/metabolite_concentration/mmc2.xlsx
docs/metabolite_concentration/mmc3.xlsx