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File SwaggerHealthModelSheetImporter.java has 872 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;

import java.math.BigDecimal;
import java.util.Arrays;
import java.util.Date;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java - About 2 days to fix

File SwaggerConsumptionSheetImporter.java has 872 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;

import java.math.BigDecimal;
import java.util.Arrays;
import java.util.Date;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java - About 2 days to fix

File SwaggerToxicologicalSheetImporter.java has 872 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;

import java.math.BigDecimal;
import java.util.Arrays;
import java.util.Date;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java - About 2 days to fix

File FoodProcessUi.java has 868 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/FoodProcessUi.java - About 2 days to fix

File SwaggerProcessModelSheetImporter.java has 865 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;


import java.math.BigDecimal;
import java.util.Arrays;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java - About 2 days to fix

File ParametricModel.java has 862 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ParametricModel.java - About 2 days to fix

DBKernel has 108 methods (exceeds 20 allowed). Consider refactoring.
Open

public class DBKernel {

    /**
     * @param args
     */
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/DBKernel.java - About 2 days to fix

File javascript.js has 861 lines of code (exceeds 250 allowed). Consider refactoring.
Open

// CodeMirror, copyright (c) by Marijn Haverbeke and others
// Distributed under an MIT license: https://codemirror.net/LICENSE

(function(mod) {
  if (typeof exports == "object" && typeof module == "object") // CommonJS
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/javascript/javascript.js - About 2 days to fix

File EmfMetadataModule.java has 858 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;

import java.io.IOException;
import java.text.ParseException;
import java.text.SimpleDateFormat;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/EmfMetadataModule.java - About 2 days to fix

Method monitoredAssign has a Cognitive Complexity of 103 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public void monitoredAssign(final String name, final BufferedDataTable table,
      final ExecutionMonitor exec, final int batchSize, final String rType,
      final boolean sendRowNames) throws RException, CanceledExecutionException {
Severity: Minor
Found in de.bund.bfr.knime.fsklab.r/src/de/bund/bfr/knime/fsklab/r/client/RController.java - About 2 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    public void saveFSKPortObject(FskPortObject portObject, final PortObjectZipOutputStream out,
        final ExecutionMonitor exec) throws IOException {

      // First FSK Object
      // model entry (file with model script)
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/CombinedFskPortObject.java and 1 other location - About 2 days to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/CombinedFskPortObject.java on lines 284..447

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 998.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    public void saveFSKPortObject(FskPortObject portObject, final PortObjectZipOutputStream out,
        final ExecutionMonitor exec) throws IOException {

      // First FSK Object
      // model entry (file with model script)
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/CombinedFskPortObject.java and 1 other location - About 2 days to fix
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/CombinedFskPortObject.java on lines 280..443

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 998.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if (ListOfPaths != null && ListOfPaths.size() > 1) {
      String firstelement = ListOfPaths.get(ListOfPaths.size() % 2);
      // classify the pathes into two groups, each belongs to sub model
      List<String> firstGroup = ListOfPaths.stream().filter(line -> line.startsWith(firstelement))
          .collect(Collectors.toList());
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeUtil.java and 1 other location - About 2 days to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/reader/ReaderNodeModel.java on lines 255..433

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 986.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if (ListOfPaths != null && ListOfPaths.size() > 1) {
      String firstelement = ListOfPaths.get(ListOfPaths.size() % 2);
      // classify the pathes into two groups, each belongs to sub model
      List<String> firstGroup = ListOfPaths.stream().filter(line -> line.startsWith(firstelement))
          .collect(Collectors.toList());
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/reader/ReaderNodeModel.java and 1 other location - About 2 days to fix
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeUtil.java on lines 331..509

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 986.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Method getID has a Cognitive Complexity of 101 (exceeds 5 allowed). Consider refactoring.
Open

    private Integer getID(String tablename, String[] feldnames, String[] feldVals, boolean[] key, boolean[] isStringType) {
        Integer result = null;
        String sql = "SELECT " + DBKernel.delimitL("ID") + " FROM " + DBKernel.delimitL(tablename) + " WHERE TRUE";
        String fns = "";
        String fvs = "";
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/imports/custom/LieferkettenImporterEFSA.java - About 2 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File CombinedFskPortObject.java has 843 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/CombinedFskPortObject.java - About 2 days to fix

File editor.js has 842 lines of code (exceeds 250 allowed). Consider refactoring.
Open

// For debug purposes
function printKeys(object) {
    for (var key in object) { alert(key); }
}
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/editor/editor.js - About 2 days to fix

File SwaggerDoseResponseSheetImporter.java has 840 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata;

import java.math.BigDecimal;
import java.util.Arrays;
import java.util.Date;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java - About 2 days to fix

File clike.js has 837 lines of code (exceeds 250 allowed). Consider refactoring.
Open

// CodeMirror, copyright (c) by Marijn Haverbeke and others
// Distributed under an MIT license: https://codemirror.net/LICENSE

(function(mod) {
  if (typeof exports == "object" && typeof module == "object") // CommonJS
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/clike/clike.js - About 2 days to fix

Method getDataTable has a Cognitive Complexity of 100 (exceeds 5 allowed). Consider refactoring.
Open

    private void getDataTable(Bfrdb db) {
        try {
            try {
                if (refresher != null) refresher.call();
            }
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/estimatedmodelreader/EmReaderUi.java - About 2 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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