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File ion.rangeSlider.js has 1733 lines of code (exceeds 250 allowed). Consider refactoring.
Open

// Ion.RangeSlider
// version 2.3.1 Build: 382
// © Denis Ineshin, 2019
// https://github.com/IonDen
//
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/ion.rangeSlider.js - About 4 days to fix

Similar blocks of code found in 2 locations. Consider refactoring.
Open

/**
 */
package metadata.impl;

import metadata.Hazard;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/HazardImpl.java and 1 other location - About 4 days to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/ContactImpl.java on lines 1..865

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 2219.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

/**
 */
package metadata.impl;

import metadata.Contact;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/ContactImpl.java and 1 other location - About 4 days to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/HazardImpl.java on lines 1..865

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 2219.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File Bfrdb.java has 1696 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java - About 4 days to fix

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    function tokenBase (stream, state) {
      var ch = stream.peek();

      //Comment
      if (state.incomment) {
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/jinja2/jinja2.js and 1 other location - About 4 days to fix
de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/twig/twig.js on lines 24..119

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 756.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    function tokenBase (stream, state) {
      var ch = stream.peek();

      //Comment
      if (state.incomment) {
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/twig/twig.js and 1 other location - About 4 days to fix
de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/jinja2/jinja2.js on lines 36..131

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 756.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File MyDBTablesNew.java has 1621 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java - About 4 days to fix

Method getKnimeTuples has a Cognitive Complexity of 211 (exceeds 5 allowed). Consider refactoring.
Open

    public static List<KnimeTuple> getKnimeTuples(Bfrdb db, Connection conn, KnimeSchema schema,
            int level, boolean withoutMdData, int qualityMode, double qualityThresh,
            String matrixString, String agentString, String literatureString, int matrixID, int agentID, int literatureID, LinkedHashMap<String, Double[]> parameter,
            boolean modelFilterEnabled, int[] modelList, String where, EstimatedModelReaderNodeModel emrnm) throws SQLException {
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/estimatedmodelreader/EstimatedModelReaderNodeModel.java - About 4 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method addNodes has a Cognitive Complexity of 210 (exceeds 5 allowed). Consider refactoring.
Open

    private void addNodes(final Connection conn, final WorkflowManager wfm) throws CoreException {    
        LinkedHashMap<Integer, NodeID> nodesMap = new LinkedHashMap<Integer, NodeID>();
        LinkedHashMap<Integer, Integer> fromMap = new LinkedHashMap<Integer, Integer>();
        LinkedHashMap<Integer, Integer> toMap = new LinkedHashMap<Integer, Integer>();
        //LinkedHashMap<Integer, LinkedHashMap<Integer, Double>> fractionsIn = new LinkedHashMap<Integer, LinkedHashMap<Integer, Double>>();
Severity: Minor
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/CreateWorkflow.java - About 4 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File bootstrap.js has 1596 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*!
 * Bootstrap v3.3.7 (http://getbootstrap.com)
 * Copyright 2011-2016 Twitter, Inc.
 * Licensed under the MIT license
 */
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap/3_3_7/debug/js/bootstrap.js - About 4 days to fix

MetadataPackageImpl has 211 methods (exceeds 20 allowed). Consider refactoring.
Open

public class MetadataPackageImpl extends EPackageImpl implements MetadataPackage {
    /**
     * <!-- begin-user-doc -->
     * <!-- end-user-doc -->
     * @generated
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/MetadataPackageImpl.java - About 4 days to fix

File fskutil_1.0.0.js has 1572 lines of code (exceeds 250 allowed). Consider refactoring.
Open

fskutil = function () {

    var fskutil = { version: "1.0.0" };

    /** Temporary workaround for some metadata glitches. */
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/bfr/fskutil_1.0.0.js - About 4 days to fix

File DBKernel.java has 1568 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/DBKernel.java - About 4 days to fix

MetadataPackage has 208 methods (exceeds 20 allowed). Consider refactoring.
Open

public interface MetadataPackage extends EPackage {
    /**
     * The package name.
     * <!-- begin-user-doc -->
     * <!-- end-user-doc -->
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/MetadataPackage.java - About 4 days to fix

Method prepareColumns has a Cognitive Complexity of 202 (exceeds 5 allowed). Consider refactoring.
Open

    private void prepareColumns() {
        Column c = this.getColumn(0);
        c.setReadOnly(true);

        if (actualTable != null) {
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtable/MyDBTable.java - About 4 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 199 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(final PortObject[] inObjects, 
            final ExecutionContext exec) {
        PCMLDocument pcmlDoc = PCMLUtil.merge(inObjects);
Severity: Minor
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/FoodProcessNodeModel.java - About 4 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File MyDBTable.java has 1511 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtable/MyDBTable.java - About 4 days to fix

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/PredictiveModelGeneralInformation.java and 2 other locations - About 3 days to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/GenericModelGeneralInformation.java on lines 1..542
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/OtherModelGeneralInformation.java on lines 1..542

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 1896.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/GenericModelGeneralInformation.java and 2 other locations - About 3 days to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/OtherModelGeneralInformation.java on lines 1..542
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/PredictiveModelGeneralInformation.java on lines 1..542

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 1896.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/OtherModelGeneralInformation.java and 2 other locations - About 3 days to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/GenericModelGeneralInformation.java on lines 1..542
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/PredictiveModelGeneralInformation.java on lines 1..542

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 1896.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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