SiLeBAT/FSK-Lab

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Similar blocks of code found in 2 locations. Consider refactoring.
Open

        function load_organism_combo(selected_organism_id) {
            var list = '';
            for (var i = 0; i < dbAgents.length; i++) {
                var organism = dbAgents[i];
                var selected = (organism.id === selected_organism_id) ? "selected" : "";
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/editor/editor.js on lines 372..381

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        if (prefix) {
            if (plugin && plugin.normalize) {
                name = plugin.normalize(name, makeNormalize(relResourceName));
            } else {
                name = normalize(name, relResourceName);
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js and 1 other location - About 4 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js on lines 265..279

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        if (prefix) {
            if (plugin && plugin.normalize) {
                name = plugin.normalize(name, makeNormalize(relName));
            } else {
                name = normalize(name, relName);
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 268..282

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        fillMinute: function() {
            var items = this.fillCommon('m'), name, i,
                twoDigit = this.options.template.indexOf('mm') !== -1;

            for(i=0; i<=59; i+= this.options.minuteStep) {
de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-editable/1_5_1/debug/js/bootstrap-editable.js on lines 4205..4214

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        function load_matrix_combo(selected_matrix_id) {
            var list = '';
            for (var i = 0; i < dbMatrices.length; i++) {
                var matrix = dbMatrices[i];
                var selected = (matrix.id === selected_matrix_id) ? "selected" : "";
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/editor/editor.js on lines 315..324

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        fillSecond: function() {
            var items = this.fillCommon('s'), name, i,
                twoDigit = this.options.template.indexOf('ss') !== -1;

            for(i=0; i<=59; i+= this.options.secondStep) {
de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-editable/1_5_1/debug/js/bootstrap-editable.js on lines 4191..4200

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 129.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File Parameter.java has 362 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4

Method processSpreadsheet has 117 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public FskMetaData processSpreadsheet(final Sheet sheet) {

        final FskMetaData template = new FskMetaData();

        final Cell modelNameCell = sheet.getRow(NAME).getCell(5);

Method updateConfigPanel has 117 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void updateConfigPanel() {
        if (configPanel != null) {
            remove(configPanel);
        }

Function block has 117 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    states.block = function(type, stream, state) {
      if ((type == "comment" && startOfLine(stream)) ||
          (type == "," && endOfLine(stream)) ||
          type == "mixin") {
        return pushContext(state, stream, "block", 0);
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/stylus/stylus.js - About 4 hrs to fix

MetadataFactoryImpl has 36 methods (exceeds 20 allowed). Consider refactoring.
Open

public class MetadataFactoryImpl extends EFactoryImpl implements MetadataFactory {
    /**
     * Creates the default factory implementation.
     * <!-- begin-user-doc -->
     * <!-- end-user-doc -->

JsM1DataSchema has 36 methods (exceeds 20 allowed). Consider refactoring.
Open

@JsonAutoDetect
@JsonTypeInfo(use = JsonTypeInfo.Id.CLASS, include = JsonTypeInfo.As.PROPERTY, property = "@class")
public class JsM1DataSchema implements ViewValue {

    // Model1 fields

HeaderImpl has 36 methods (exceeds 20 allowed). Consider refactoring.
Open

    public static class HeaderImpl extends org.apache.xmlbeans.impl.values.XmlComplexContentImpl implements de.bund.bfr.pcml10.HeaderDocument.Header
    {
        private static final long serialVersionUID = 1L;
        
        public HeaderImpl(org.apache.xmlbeans.SchemaType sType)

Header has 36 methods (exceeds 20 allowed). Consider refactoring.
Open

    public interface Header extends org.apache.xmlbeans.XmlObject
    {
        public static final org.apache.xmlbeans.SchemaType type = (org.apache.xmlbeans.SchemaType)
            org.apache.xmlbeans.XmlBeans.typeSystemForClassLoader(Header.class.getClassLoader(), "schemaorg_apache_xmlbeans.system.s121DA543B1FCBC764F9DFAF30A6E9DAF").resolveHandle("headerc516elemtype");
        

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  private static class Assignment {

    enum Type {
      /** R command with the = assignment operator. E.g. x = value */
      equals,
de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/creator/FskxCreatorNodeModel.java on lines 284..325
de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/reader/FskxReaderNodeModel.java on lines 473..514

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 289.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  private static class Assignment {

    enum Type {
      /** R command with the = assignment operator. E.g. x = value */
      equals,
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/creator/FskCreatorNodeModel.java on lines 314..357
de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/creator/FskxCreatorNodeModel.java on lines 284..325

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 289.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

    private static class Assignment {

        enum Type {
            /** R command with the = assignment operator. E.g. x = value */
            equals,
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/creator/FskCreatorNodeModel.java on lines 314..357
de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/reader/FskxReaderNodeModel.java on lines 473..514

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 289.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  Results.prototype.highlightFirstItem = function () {
    var $options = this.$results
      .find('.select2-results__option[aria-selected]');

    var $selected = $options.filter('[aria-selected=true]');
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 951..968

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 128.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  Results.prototype.highlightFirstItem = function () {
    var $options = this.$results
      .find('.select2-results__option--selectable');

    var $selected = $options.filter('.select2-results__option--selected');
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js and 1 other location - About 4 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js on lines 873..890

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 128.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File MyChartDialog.java has 360 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
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