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Showing 14,752 of 14,752 total issues

Method saveFSKPortObject has 112 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void saveFSKPortObject(FskPortObject portObject, final PortObjectZipOutputStream out,
        final ExecutionMonitor exec) throws IOException {

      // First FSK Object
      // model entry (file with model script)
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/CombinedFskPortObject.java - About 4 hrs to fix

Function _create has 112 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _create() {
        this._panels = {
            generalInformation:  {
                type             : 'simple',
                schema             : this._schema.generalInformation,
Severity: Major
Found in de.bund.bfr.knime.js/src/js/app/app.schemas.js - About 4 hrs to fix

Function click has 112 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        click: function(e){
            e.preventDefault();
            e.stopPropagation();

            var target, dir, day, year, month, monthChanged, yearChanged;
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js - About 4 hrs to fix

File DoseResponseModelGeneralInformation.java has 353 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/DoseResponseModelGeneralInformation.java - About 4 hrs to fix

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        } else if (attr.startsWith(Model1Schema.ATT_ESTMODEL)) { // GeschaetzteModelle
            PmmXmlDoc estModel = row.getPmmXml(attr);
            if (estModel != null) {
                PmmXmlDoc fromToXmlDB = pm.getEstModel();
                int i = 0;
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/CellIO.java and 1 other location - About 4 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/CellIO.java on lines 339..371

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 278.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        } else if (attr.startsWith(Model1Schema.ATT_MODELCATALOG)) { // Modellkatalog
            PmmXmlDoc modelCat = row.getPmmXml(attr);
            if (modelCat != null) {
                PmmXmlDoc fromToXmlDB = pm.getCatModel();
                int i = 0;
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/CellIO.java and 1 other location - About 4 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/CellIO.java on lines 371..403

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 278.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

    function opts_from_locale(lang){
        // Derive options from locale plugins
        var out = {};
        // Check if "de-DE" style date is available, if not language should
        // fallback to 2 letter code eg "de"
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/bootstrap-datepicker.js and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js on lines 1661..1677
de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-editable/1_5_1/debug/js/bootstrap-editable.js on lines 5862..5878

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 124.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

    function opts_from_locale(lang){
        // Derive options from locale plugins
        var out = {};
        // Check if "de-DE" style date is available, if not language should
        // fallback to 2 letter code eg "de"
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.js/src/js/lib/bootstrap-datepicker.js on lines 1612..1628
de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-editable/1_5_1/debug/js/bootstrap-editable.js on lines 5862..5878

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 124.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

    function opts_from_locale(lang){
        // Derive options from locale plugins
        var out = {};
        // Check if "de-DE" style date is available, if not language should
        // fallback to 2 letter code eg "de"
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-editable/1_5_1/debug/js/bootstrap-editable.js and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js on lines 1661..1677
de.bund.bfr.knime.js/src/js/lib/bootstrap-datepicker.js on lines 1612..1628

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 124.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Method processMetadata has 111 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  private static FskMetaData processMetadata(final SBMLDocument doc) {

    FskMetaData template = new FskMetaData();

    Model model = doc.getModel();
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/reader/FskxReaderNodeModel.java - About 4 hrs to fix

Function chord has 111 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  d3.layout.chord = function() {
    var chord = {}, chords, groups, matrix, n, padding = 0, sortGroups, sortSubgroups, sortChords;
    function relayout() {
      var subgroups = {}, groupSums = [], groupIndex = d3.range(n), subgroupIndex = [], k, x, x0, i, j;
      chords = [];
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/d3.js - About 4 hrs to fix

Function encode has 111 lines of code (exceeds 25 allowed). Consider refactoring.
Open

var encode = function encode(input) {
    var output = [];

    // Convert the input in UCS-2 to an array of Unicode code points.
    input = ucs2decode(input);
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js - About 4 hrs to fix

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  @Override
  public boolean equals(java.lang.Object o) {
    if (this == o) {
      return true;
    }
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Study.java and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/DataModelGeneralInformation.java on lines 402..427
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Parameter.java on lines 485..510

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 276.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  @Override
  public boolean equals(java.lang.Object o) {
    if (this == o) {
      return true;
    }
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Parameter.java and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/DataModelGeneralInformation.java on lines 402..427
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Study.java on lines 368..393

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 276.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  @Override
  public boolean equals(java.lang.Object o) {
    if (this == o) {
      return true;
    }
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/DataModelGeneralInformation.java and 2 other locations - About 4 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Parameter.java on lines 485..510
de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Study.java on lines 368..393

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 276.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File QualityMeasurementComputation.java has 351 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/QualityMeasurementComputation.java - About 4 hrs to fix

Method doLhm has a Cognitive Complexity of 30 (exceeds 5 allowed). Consider refactoring.
Open

    private void doLhm(SingleNodeContainer p2Container, LinkedHashMap<Integer, Double> lhm, LinkedHashMap<Integer, Matrix> lhmm, int fromPort, int toKey) throws SQLException {
        if (lhm != null) {
            //FoodProcessNodeModel p2Model = ((FoodProcessNodeModel)p2Container.getNode().getNodeModel());
            FoodProcessNodeModel p2Model = ((FoodProcessNodeModel)((NativeNodeContainer)p2Container).getNode().getNodeModel());
            FoodProcessNodeSettings fns = p2Model.getSetting();
Severity: Minor
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/CreateWorkflow.java - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method processSpreadsheet has a Cognitive Complexity of 30 (exceeds 5 allowed). Consider refactoring.
Open

    public FskMetaData processSpreadsheet(final Sheet sheet) {

        final FskMetaData template = new FskMetaData();

        final Cell modelNameCell = sheet.getRow(NAME).getCell(5);
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/LegacyMetadataImporter.java - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method eIsSet has a Cognitive Complexity of 30 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean eIsSet(int featureID) {
        switch (featureID) {
            case MetadataPackage.PARAMETER__PARAMETER_ID:
                return PARAMETER_ID_EDEFAULT == null ? parameterID != null : !PARAMETER_ID_EDEFAULT.equals(parameterID);
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/ParameterImpl.java - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method eIsSet has a Cognitive Complexity of 30 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean eIsSet(int featureID) {
        switch (featureID) {
            case MetadataPackage.GENERAL_INFORMATION__NAME:
                return NAME_EDEFAULT == null ? name != null : !NAME_EDEFAULT.equals(name);
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/GeneralInformationImpl.java - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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