| scripts/assembly.bash | |
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| scripts/cds.bash | |
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| scripts/clade_finding.bash | |
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| scripts/d.bash | |
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| scripts/distances.bash | |
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| scripts/essential_genes.bash | |
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| scripts/haai_distances.bash | |
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| scripts/init.bash | |
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| scripts/maintenance.bash | |
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| scripts/miga.bash | |
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| scripts/mytaxa.bash | |
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| scripts/mytaxa_scan.bash | |
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| scripts/ogs.bash | |
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| scripts/p.bash | |
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| scripts/project_stats.bash | |
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| scripts/read_quality.bash | |
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| scripts/ssu.bash | |
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| scripts/stats.bash | |
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| scripts/subclades.bash | |
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| scripts/taxonomy.bash | |
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| scripts/trimmed_fasta.bash | |
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| scripts/trimmed_reads.bash | |
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|
| lib/miga/cli.rb | 128 | A 1 hr |
|
| lib/miga/cli/action.rb | 38 |
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| lib/miga/cli/action/about.rb | 38 | A 1 hr |
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| lib/miga/cli/action/add.rb | 157 | B 6 hrs |
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| lib/miga/cli/action/add_result.rb | 39 | A 25 mins |
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| lib/miga/cli/action/archive.rb | 81 | A 35 mins |
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| lib/miga/cli/action/browse.rb | 188 | A 55 mins |
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| lib/miga/cli/action/classify_wf.rb | 90 | A 3 hrs |
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| lib/miga/cli/action/console.rb | 12 |
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| lib/miga/cli/action/daemon.rb | 82 | A 2 hrs |
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| lib/miga/cli/action/date.rb | 11 |
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| lib/miga/cli/action/db.rb | 228 | B 4 hrs |
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| lib/miga/cli/action/derep_wf.rb | 92 | A 1 hr |
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| lib/miga/cli/action/doctor.rb | 59 |
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| lib/miga/cli/action/doctor/base.rb | 86 | A 3 hrs |
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| lib/miga/cli/action/doctor/databases.rb | 32 | A 25 mins |
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| lib/miga/cli/action/doctor/distances.rb | 112 | C 1 day |
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| lib/miga/cli/action/doctor/operations.rb | 135 | C 7 hrs |
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| lib/miga/cli/action/download/base.rb | 187 | B 5 hrs |
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| lib/miga/cli/action/download/gtdb.rb | 50 |
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|
| lib/miga/cli/action/download/ncbi.rb | 131 | A 1 hr |
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| lib/miga/cli/action/download/seqcode.rb | 55 | A 3 hrs |
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| lib/miga/cli/action/edit.rb | 33 |
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|
| lib/miga/cli/action/env.rb | 19 |
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| lib/miga/cli/action/files.rb | 26 | A 45 mins |
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| lib/miga/cli/action/find.rb | 42 |
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| lib/miga/cli/action/generic.rb | 37 |
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| lib/miga/cli/action/get.rb | 162 | C 7 hrs |
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