bio-miga/miga

View on GitHub

Showing 1,637 of 1,651 total issues

Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga/cli/action/relatives.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Missing top-level class documentation comment.
Open

class MiGA::Cli::Action::TaxIndex < MiGA::Cli::Action
Severity: Minor
Found in lib/miga/cli/action/tax_index.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Missing top-level class documentation comment.
Open

class MiGA::Cli::Action::TaxDist < MiGA::Cli::Action
Severity: Minor
Found in lib/miga/cli/action/tax_dist.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Avoid the use of Perl-style backrefs.
Open

            in_rank = $2 == '?' ? nil : $1
Severity: Minor
Found in lib/miga/cli/action/tax_dist.rb by rubocop

This cop looks for uses of Perl-style regexp match backreferences like $1, $2, etc.

Example:

# bad
puts $1

# good
puts Regexp.last_match(1)

Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga/cli/action/add_result.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Trailing whitespace detected.
Open

        

Prefer Date or Time over DateTime.
Open

      d && DateTime.parse(d.metadata[:updated]) < cli[:updated_before]

This cop checks for uses of DateTime that should be replaced by Date or Time.

Example:

# bad - uses `DateTime` for current time
DateTime.now

# good - uses `Time` for current time
Time.now

# bad - uses `DateTime` for modern date
DateTime.iso8601('2016-06-29')

# good - uses `Date` for modern date
Date.iso8601('2016-06-29')

# good - uses `DateTime` with start argument for historical date
DateTime.iso8601('1751-04-23', Date::ENGLAND)

Extra blank line detected.
Open


  def finalize_tasks(d, downloaded)

This cops checks for two or more consecutive blank lines.

Example:

# bad - It has two empty lines.
some_method
# one empty line
# two empty lines
some_method

# good
some_method
# one empty line
some_method

Missing magic comment # frozen_string_literal: true.
Open


module MiGA
Severity: Minor
Found in lib/miga/common/errors.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Missing magic comment # frozen_string_literal: true.
Open

##
Severity: Minor
Found in lib/miga/common/with_result.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Missing magic comment # frozen_string_literal: true.
Open

module MiGA::Common::Path
Severity: Minor
Found in lib/miga/common/path.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Use snake_case for method names.
Open

    def DEBUG_TRACE_OFF
Severity: Minor
Found in lib/miga/common/base.rb by rubocop

This cop makes sure that all methods use the configured style, snake_case or camelCase, for their names.

Example: EnforcedStyle: snake_case (default)

# bad
def fooBar; end

# good
def foo_bar; end

Example: EnforcedStyle: camelCase

# bad
def foo_bar; end

# good
def fooBar; end

Use warn instead of $stderr.puts to allow such output to be disabled.
Open

      $stderr.puts(*args) if debug?
Severity: Minor
Found in lib/miga/common/base.rb by rubocop

This cop identifies places where $stderr.puts can be replaced by warn. The latter has the advantage of easily being disabled by, e.g. the -W0 interpreter flag, or setting $VERBOSE to nil.

Example:

# bad
$stderr.puts('hello')

# good
warn('hello')

Avoid rescuing without specifying an error class.
Open

  rescue => e
Severity: Minor
Found in lib/miga/common/net.rb by rubocop

This cop checks for rescuing StandardError. There are two supported styles implicit and explicit. This cop will not register an offense if any error other than StandardError is specified.

Example: EnforcedStyle: implicit

# `implicit` will enforce using `rescue` instead of
# `rescue StandardError`.

# bad
begin
  foo
rescue StandardError
  bar
end

# good
begin
  foo
rescue
  bar
end

# good
begin
  foo
rescue OtherError
  bar
end

# good
begin
  foo
rescue StandardError, SecurityError
  bar
end

Example: EnforcedStyle: explicit (default)

# `explicit` will enforce using `rescue StandardError`
# instead of `rescue`.

# bad
begin
  foo
rescue
  bar
end

# good
begin
  foo
rescue StandardError
  bar
end

# good
begin
  foo
rescue OtherError
  bar
end

# good
begin
  foo
rescue StandardError, SecurityError
  bar
end

Replace class var @@LONG_RANKS with a class instance var.
Open

  @@LONG_RANKS = {
Severity: Minor
Found in lib/miga/taxonomy/base.rb by rubocop

This cop checks for uses of class variables. Offenses are signaled only on assignment to class variables to reduce the number of offenses that would be reported.

Omit the parentheses in defs when the method doesn't accept any arguments.
Open

    def LONG_RANKS()
Severity: Minor
Found in lib/miga/taxonomy/base.rb by rubocop

This cop checks for parentheses in the definition of a method, that does not take any arguments. Both instance and class/singleton methods are checked.

Example:

# bad
def foo()
  # does a thing
end

# good
def foo
  # does a thing
end

# also good
def foo() does_a_thing end

Example:

# bad
def Baz.foo()
  # does a thing
end

# good
def Baz.foo
  # does a thing
end

Missing top-level module documentation comment.
Open

module MiGA::Taxonomy::Base
Severity: Minor
Found in lib/miga/taxonomy/base.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Missing top-level module documentation comment.
Open

module MiGA::Cli::Base
Severity: Minor
Found in lib/miga/cli/base.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Prefer Date or Time over DateTime.
Open

    ) { |v| cli[:updated_before] = DateTime.parse(v) }

This cop checks for uses of DateTime that should be replaced by Date or Time.

Example:

# bad - uses `DateTime` for current time
DateTime.now

# good - uses `Time` for current time
Time.now

# bad - uses `DateTime` for modern date
DateTime.iso8601('2016-06-29')

# good - uses `Date` for modern date
Date.iso8601('2016-06-29')

# good - uses `DateTime` with start argument for historical date
DateTime.iso8601('1751-04-23', Date::ENGLAND)

Missing top-level class documentation comment.
Open

class MiGA::Cli < MiGA::MiGA
Severity: Minor
Found in lib/miga/cli/base.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end
Severity
Category
Status
Source
Language