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Function bind has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  bind() {
    super.bind();
    let datasets = [];
    let mydata1 = this.initialdata.split(';');
    //initialize x and y, x is first dataset, y is al the rest
Severity: Major
Found in src_aurelia-bodylight-plugin/src/elements/chartjs-xy.js - About 2 hrs to fix

    Function strftime has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

    Date.ext={};Date.ext.util={};Date.ext.util.xPad=function(x,pad,r){if(typeof (r)=="undefined"){r=10}for(;parseInt(x,10)<r&&r>1;r/=10){x=pad.toString()+x}return x.toString()};Date.prototype.locale="en-GB";if(document.getElementsByTagName("html")&&document.getElementsByTagName("html")[0].lang){Date.prototype.locale=document.getElementsByTagName("html")[0].lang}Date.ext.locales={};Date.ext.locales.en={a:["Sun","Mon","Tue","Wed","Thu","Fri","Sat"],A:["Sunday","Monday","Tuesday","Wednesday","Thursday","Friday","Saturday"],b:["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"],B:["January","February","March","April","May","June","July","August","September","October","November","December"],c:"%a %d %b %Y %T %Z",p:["AM","PM"],P:["am","pm"],x:"%d/%m/%y",X:"%T"};Date.ext.locales["en-US"]=Date.ext.locales.en;Date.ext.locales["en-US"].c="%a %d %b %Y %r %Z";Date.ext.locales["en-US"].x="%D";Date.ext.locales["en-US"].X="%r";Date.ext.locales["en-GB"]=Date.ext.locales.en;Date.ext.locales["en-AU"]=Date.ext.locales["en-GB"];Date.ext.formats={a:function(d){return Date.ext.locales[d.locale].a[d.getDay()]},A:function(d){return Date.ext.locales[d.locale].A[d.getDay()]},b:function(d){return Date.ext.locales[d.locale].b[d.getMonth()]},B:function(d){return Date.ext.locales[d.locale].B[d.getMonth()]},c:"toLocaleString",C:function(d){return Date.ext.util.xPad(parseInt(d.getFullYear()/100,10),0)},d:["getDate","0"],e:["getDate"," "],g:function(d){return Date.ext.util.xPad(parseInt(Date.ext.util.G(d)/100,10),0)},G:function(d){var y=d.getFullYear();var V=parseInt(Date.ext.formats.V(d),10);var W=parseInt(Date.ext.formats.W(d),10);if(W>V){y++}else{if(W===0&&V>=52){y--}}return y},H:["getHours","0"],I:function(d){var I=d.getHours()%12;return Date.ext.util.xPad(I===0?12:I,0)},j:function(d){var ms=d-new Date(""+d.getFullYear()+"/1/1 GMT");ms+=d.getTimezoneOffset()*60000;var doy=parseInt(ms/60000/60/24,10)+1;return Date.ext.util.xPad(doy,0,100)},m:function(d){return Date.ext.util.xPad(d.getMonth()+1,0)},M:["getMinutes","0"],p:function(d){return Date.ext.locales[d.locale].p[d.getHours()>=12?1:0]},P:function(d){return Date.ext.locales[d.locale].P[d.getHours()>=12?1:0]},S:["getSeconds","0"],u:function(d){var dow=d.getDay();return dow===0?7:dow},U:function(d){var doy=parseInt(Date.ext.formats.j(d),10);var rdow=6-d.getDay();var woy=parseInt((doy+rdow)/7,10);return Date.ext.util.xPad(woy,0)},V:function(d){var woy=parseInt(Date.ext.formats.W(d),10);var dow1_1=(new Date(""+d.getFullYear()+"/1/1")).getDay();var idow=woy+(dow1_1>4||dow1_1<=1?0:1);if(idow==53&&(new Date(""+d.getFullYear()+"/12/31")).getDay()<4){idow=1}else{if(idow===0){idow=Date.ext.formats.V(new Date(""+(d.getFullYear()-1)+"/12/31"))}}return Date.ext.util.xPad(idow,0)},w:"getDay",W:function(d){var doy=parseInt(Date.ext.formats.j(d),10);var rdow=7-Date.ext.formats.u(d);var woy=parseInt((doy+rdow)/7,10);return Date.ext.util.xPad(woy,0,10)},y:function(d){return Date.ext.util.xPad(d.getFullYear()%100,0)},Y:"getFullYear",z:function(d){var o=d.getTimezoneOffset();var H=Date.ext.util.xPad(parseInt(Math.abs(o/60),10),0);var M=Date.ext.util.xPad(o%60,0);return(o>0?"-":"+")+H+M},Z:function(d){return d.toString().replace(/^.*\(([^)]+)\)$/,"$1")},"%":function(d){return"%"}};Date.ext.aggregates={c:"locale",D:"%m/%d/%y",h:"%b",n:"\n",r:"%I:%M:%S %p",R:"%H:%M",t:"\t",T:"%H:%M:%S",x:"locale",X:"locale"};Date.ext.aggregates.z=Date.ext.formats.z(new Date());Date.ext.aggregates.Z=Date.ext.formats.Z(new Date());Date.ext.unsupported={};Date.prototype.strftime=function(fmt){if(!(this.locale in Date.ext.locales)){if(this.locale.replace(/-[a-zA-Z]+$/,"") in Date.ext.locales){this.locale=this.locale.replace(/-[a-zA-Z]+$/,"")}else{this.locale="en-GB"}}var d=this;while(fmt.match(/%[cDhnrRtTxXzZ]/)){fmt=fmt.replace(/%([cDhnrRtTxXzZ])/g,function(m0,m1){var f=Date.ext.aggregates[m1];return(f=="locale"?Date.ext.locales[d.locale][m1]:f)})}var str=fmt.replace(/%([aAbBCdegGHIjmMpPSuUVwWyY%])/g,function(m0,m1){var f=Date.ext.formats[m1];if(typeof (f)=="string"){return d[f]()}else{if(typeof (f)=="function"){return f.call(d,d)}else{if(typeof (f)=="object"&&typeof (f[0])=="string"){return Date.ext.util.xPad(d[f[0]](),f[1])}else{return m1}}}});d=null;return str};
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/utils/dygraph.js - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function updateValue has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

      updateValue(rawvalue) {
    if (rawvalue.toPrecision) {  
      if ((this.tofixed !== null) && (this.tofixed !== undefined) && (this.tofixed>=0)) {
        //probably will have toFixed function
        if (this.operation) this.value = this.operation[0](rawvalue).toFixed(this.tofixed); // * this.numerator / this.denominator + this.addconst;
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/elements/value.js - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function bind has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

      bind() {
    this.useranswer = [];
    this.showquiz=true;
    this.showresult = false;
    this.answers_array = (this.answers)? this.answers.split('|').map(s => s.trim()): [];
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/elements/quiz.js - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function discoverChildren has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

      discoverChildren(root, prefix, suffix) {
    let discovered = [];
    //console.log('discovering', prefix);
    if (root.children) {
    //depth first
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/elements/animate-adobe.js - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function bind has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

        async bind() {
        let firebaseConfig;
        console.log('FBconfig.bind()');
        if (!window.userid) {
            let storeduuid = localStorage.getItem('deviceUUID');
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/elements/fb-config.js - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    File markdown-it-bfootnote.js has 259 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    //<a onclick="document.getElementById(\'' + anchor + '\').scrollIntoView();">

// Process footnotes
//
//'use strict';
    Severity: Minor
    Found in src_aurelia-bodylight-plugin/src/elements/markdown-it-bfootnote.js - About 2 hrs to fix

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

          this.handleFMIAttached = e => {
      const fromel = document.getElementById(this.fromid);
      if (fromel) {
        fromel.addEventListener('fmidata', this.handleValueChange);
      } else {
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/value-store.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/value.js on lines 37..44

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

            if (window.thisfmi.isOnestep) {
        console.log('onestep scheduling direct(nopromise) to do step()')
        setTimeout(window.thisfmi.sendStartEvent.bind(window.thisfmi),1000)
        //setTimeout(window.thisfmi.step.bind(window.thisfmi),1500);
        _.throttle(window.thisfmi.step.bind(window.thisfmi),1500);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/fmi.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/fmi.js on lines 323..331

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

            if (window.thisfmi.isOneshot) {
        console.log('oneshot scheduling direct(nopromise) to do step()')
        setTimeout(window.thisfmi.sendStartEvent.bind(window.thisfmi),1000)
        //setTimeout(window.thisfmi.shot.bind(window.thisfmi),1500);
        _.throttle(window.thisfmi.shot.bind(window.thisfmi),1500);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/fmi.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/fmi.js on lines 317..331

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          selectcz(){
        this.i18n.setLocale('cs');
        this.i18n.updateTranslations(window.document);
        this.lang = 'cs';
        localforage.setItem('bdl-lang',this.lang);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/language.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/language.js on lines 43..49

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

        unbind() {
    if (this.fromel) {
      this.fromel.removeEventListener('fmidata', this.handleValueChange);
      this.fromel.removeEventListener('fmireset', this.handleReset);
      this.fromel.removeEventListener('fmiattached', this.handleFMIAttached);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/attributes/value-convertor.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/attributes/fmu-index.js on lines 47..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          selecten(){
        this.i18n.setLocale('en');
        this.i18n.updateTranslations(window.document);
        this.lang = 'en';
        localforage.setItem('bdl-lang',this.lang);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/language.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/language.js on lines 51..57

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

        unbind() {
    if (this.fromel) {
      this.fromel.removeEventListener('fmidata', this.handleValueChange);
      this.fromel.removeEventListener('fmireset',this.handleReset);
      this.fromel.removeEventListener('fmiattached', this.handleFMIAttached);
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/attributes/fmu-index.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/attributes/value-convertor.js on lines 60..66

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

          this.handleFMIAttached = e => {
      const fromel = document.getElementById(this.fromid);
      if (fromel) {
        fromel.addEventListener('fmidata', this.handleValueChange);
      } else {
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/value.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/value-store.js on lines 24..31

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 79.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

              setTimeout(() => {
          //let pdbeMolstarComponent = document.getElementById(this.pid);
          let viewerInstance = this.pdbref.viewerInstance;
          viewerInstance.visual.toggleSpin(true);
          if (this.showIons) viewerInstance.visual.select({data: this.selectIonsSection});
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/pdb-pdbe-molstar.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/pdb-pdbe-molstar.js on lines 88..93

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 78.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

              setTimeout(() => {
          //let pdbeMolstarComponent = document.getElementById(this.pid);
          let viewerInstance = this.pdbref.viewerInstance;
          viewerInstance.visual.toggleSpin(true);
          if (this.showIons) viewerInstance.visual.select({data: this.selectIonsSection});
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/elements/pdb-pdbe-molstar.js and 1 other location - About 2 hrs to fix
      src_aurelia-bodylight-plugin/src/elements/pdb-pdbe-molstar.js on lines 76..81

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 78.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Function _createIEClipArea has 53 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

      DygraphCanvasRenderer.prototype._createIEClipArea = function() {
    var className = 'dygraph-clip-div';
    var graphDiv = this.dygraph_.graphDiv;

    // Remove old clip divs.
      Severity: Major
      Found in src_aurelia-bodylight-plugin/src/utils/dygraph.js - About 2 hrs to fix

        Function bind has 53 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

          bind() {
    if (this.speedfactor) {
      if (typeof this.speedfactor === 'string') this.speedfactor = parseInt(this.speedfactor, 10);
      if (this.speedfactor <= 0 || this.speedfactor > 100) this.speedfactor = 100;
    }
        Severity: Major
        Found in src_aurelia-bodylight-plugin/src/elements/animate-control.js - About 2 hrs to fix

          Function bind has 53 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

              bind() {
        if (typeof (this.smooth) === 'string') this.smooth = this.smooth === 'true';
        if (typeof (this.step) === 'string') this.step = parseFloat(this.step);
        if (typeof (this.showicons) === 'string') this.showicons = this.showicons === 'true';
        if (typeof (this.globalanim) === 'string') this.globalanim = this.globalanim === 'true';
          Severity: Major
          Found in src_aurelia-bodylight-plugin/src/elements/range.js - About 2 hrs to fix
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