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Similar blocks of code found in 2 locations. Consider refactoring.
Open

          case 37: // left
            var prevHref = $('link[rel="prev"]').prop('href');
            if (prevHref) {
              window.location.href = prevHref;
              return false;
Severity: Minor
Found in docs/_static/doctools.js and 1 other location - About 45 mins to fix
docs/_static/doctools.js on lines 298..303

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 50.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Consider simplifying this complex logical expression.
Open

            if ( matcher[ expando ] ) {

                // Find the next relative operator (if any) for proper handling
                j = ++i;
                for ( ; j < len; j++ ) {
Severity: Major
Found in docs/_static/jquery-3.5.1.js - About 40 mins to fix

    Consider simplifying this complex logical expression.
    Open

            if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" &&
            context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) {

            context = ( Expr.find[ "ID" ]( token.matches[ 0 ]
                .replace( runescape, funescape ), context ) || [] )[ 0 ];
    Severity: Major
    Found in docs/_static/jquery-3.5.1.js - About 40 mins to fix

      Consider simplifying this complex logical expression.
      Open

                  if ( support.qsa &&
                !nonnativeSelectorCache[ selector + " " ] &&
                ( !rbuggyQSA || !rbuggyQSA.test( selector ) ) &&

                // Support: IE 8 only
      Severity: Major
      Found in docs/_static/jquery-3.5.1.js - About 40 mins to fix

        Consider simplifying this complex logical expression.
        Open

        if ( !support.focusin ) {
    jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) {

        // Attach a single capturing handler on the document while someone wants focusin/focusout
        var handler = function( event ) {
        Severity: Major
        Found in docs/_static/jquery-3.5.1.js - About 40 mins to fix

          Consider simplifying this complex logical expression.
          Open

                  if (terms[excluded[i]] == file ||
            titleterms[excluded[i]] == file ||
            $u.contains(terms[excluded[i]] || [], file) ||
            $u.contains(titleterms[excluded[i]] || [], file)) {
          valid = false;
          Severity: Major
          Found in docs/_static/searchtools.js - About 40 mins to fix

            Similar blocks of code found in 2 locations. Consider refactoring.
            Open

                            for ( i = 0, l = srcElements.length; i < l; i++ ) {
                    cloneCopyEvent( srcElements[ i ], destElements[ i ] );
                }
            Severity: Minor
            Found in docs/_static/jquery-3.5.1.js and 1 other location - About 40 mins to fix
            docs/_static/jquery-3.5.1.js on lines 6178..6180

            Duplicated Code

            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

            Tuning

            This issue has a mass of 48.

            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

            Refactorings

            Further Reading

            Similar blocks of code found in 2 locations. Consider refactoring.
            Open

                        for ( i = 0, l = srcElements.length; i < l; i++ ) {
                fixInput( srcElements[ i ], destElements[ i ] );
            }
            Severity: Minor
            Found in docs/_static/jquery-3.5.1.js and 1 other location - About 40 mins to fix
            docs/_static/jquery-3.5.1.js on lines 6189..6191

            Duplicated Code

            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

            Tuning

            This issue has a mass of 48.

            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

            Refactorings

            Further Reading

            Function condense has 5 arguments (exceeds 4 allowed). Consider refactoring.
            Open

            function condense( unmatched, map, filter, context, xml ) {
            Severity: Minor
            Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

              Function remove has 5 arguments (exceeds 4 allowed). Consider refactoring.
              Open

                  remove: function( elem, types, handler, selector, mappedTypes ) {
              Severity: Minor
              Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                Function CHILD has 5 arguments (exceeds 4 allowed). Consider refactoring.
                Open

                        "CHILD": function( type, what, _argument, first, last ) {
                Severity: Minor
                Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                  Function add has 5 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                      add: function( elem, types, handler, data, selector ) {
                  Severity: Minor
                  Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                    Function Tween has 5 arguments (exceeds 4 allowed). Consider refactoring.
                    Open

                    function Tween( elem, options, prop, end, easing ) {
                    Severity: Minor
                    Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                      Function superMatcher has 5 arguments (exceeds 4 allowed). Consider refactoring.
                      Open

                              superMatcher = function( seed, context, xml, results, outermost ) {
                      Severity: Minor
                      Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                        Function buildFragment has 5 arguments (exceeds 4 allowed). Consider refactoring.
                        Open

                        function buildFragment( elems, context, scripts, selection, ignored ) {
                        Severity: Minor
                        Found in docs/_static/jquery-3.5.1.js - About 35 mins to fix

                          Function query has 5 arguments (exceeds 4 allowed). Consider refactoring.
                          Open

                          def query(
                          Severity: Minor
                          Found in run.py - About 35 mins to fix

                            Function make_pharmgkb_chemical_node has 5 arguments (exceeds 4 allowed). Consider refactoring.
                            Open

                                def make_pharmgkb_chemical_node(
                            Severity: Minor
                            Found in kg_covid_19/transform_utils/pharmgkb/pharmgkb.py - About 35 mins to fix

                              Function _generate_negative_edges has 5 arguments (exceeds 4 allowed). Consider refactoring.
                              Open

                              def _generate_negative_edges(
                              Severity: Minor
                              Found in kg_covid_19/make_holdouts.py - About 35 mins to fix

                                Function parse_annotations has 5 arguments (exceeds 4 allowed). Consider refactoring.
                                Open

                                    def parse_annotations(
                                Severity: Minor
                                Found in kg_covid_19/transform_utils/scibite_cord/scibite_cord.py - About 35 mins to fix

                                  Function load_country_code has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
                                  Open

                                      def load_country_code(self, input_dir: str, output_dir: str) -> None:
        """Load Wikidata country codes."""
        file_path = os.path.join(input_dir, "wikidata_country_codes.tsv")
        if os.path.exists(file_path):
            with open(file_path, "r") as filehandler:
                                  Severity: Minor
                                  Found in kg_covid_19/transform_utils/scibite_cord/scibite_cord.py - About 35 mins to fix

                                  Cognitive Complexity

                                  Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                                  A method's cognitive complexity is based on a few simple rules:

                                  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                                  • Code is considered more complex for each "break in the linear flow of the code"
                                  • Code is considered more complex when "flow breaking structures are nested"

                                  Further reading

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