Showing 237 of 237 total issues
Function load_gene_info has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
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def load_gene_info(
self, input_dir: str, output_dir: str, species_id: Optional[List] = None
) -> None:
"""Load mappings from NCBI gene_info (gene_info.gz).
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function parse_line has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
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def parse_line(self, line: str, id_sep="; ") -> list:
r"""Parse one line of data from P1-01-TTD_target_download.
Return list of:
[target_id, abbrev, data_list]- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Avoid too many return statements within this function. Open
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return JSON.parse( data );Avoid too many return statements within this function. Open
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return 0;Avoid too many return statements within this function. Open
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return results;Avoid too many return statements within this function. Open
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return this;Avoid too many return statements within this function. Open
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return value;Avoid too many return statements within this function. Open
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return -1;Avoid too many return statements within this function. Open
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return event.which;Avoid too many return statements within this function. Open
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return ret;Avoid too many return statements within this function. Open
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return select( selector.replace( rtrim, "$1" ), context, results, seed );Avoid too many return statements within this function. Open
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return ret == null ? undefined : ret;Avoid too many return statements within this function. Open
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return compare & 4 ? -1 : 1;Avoid too many return statements within this function. Open
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return root.ready !== undefined ?
root.ready( selector ) :
// Execute immediately if ready is not present
selector( jQuery );Avoid too many return statements within this function. Open
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return this.each( function( i ) {
var val;
if ( this.nodeType !== 1 ) {
return;Avoid too many return statements within this function. Open
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return this.constructor( context ).find( selector );Avoid too many return statements within this function. Open
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return jQuery.makeArray( selector, this );Avoid too many return statements within this function. Open
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return sortInput ?
( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
0;Avoid too many return statements within this function. Open
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return results;Avoid too many return statements within this function. Open
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return elem[ name ];