Avoid too many return statements within this function.

Open

    return _.values(iterable);

Avoid too many return statements within this function.

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                    return results;

Avoid too many return statements within this function.

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        return false;

Avoid too many return statements within this function.

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    if (className != toString.call(b)) return false;

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            return elem.disabled === disabled;

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    return data;

Avoid too many return statements within this function.

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    if (typeof a != 'object' || typeof b != 'object') return false;

Avoid too many return statements within this function.

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      if ('constructor' in a != 'constructor' in b || a.constructor != b.constructor) return false;

Avoid too many return statements within this function.

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    return result;

Avoid too many return statements within this function.

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      if (stack[length] == a) return true;

Function parse_chembl_document has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def parse_chembl_document(self, data: List):
        """Parse ChEMBL Document records.

        Args:
            data: A list of ChEMBL Document records

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Function run has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def run(self, data_file: Optional[str] = None):
        """Run the transform."""
        # file housekeeping
        os.makedirs(self.output_dir, exist_ok=True)

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Function parse_annotations has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def parse_annotations(
        self,
        node_handle: IO,
        edge_handle: IO,
        data_file1: str,

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Function extract_termite_hits has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def extract_termite_hits(self, data: Dict) -> Set:
        """Parse termite hits.

        Args:
            node_handle: File handle for nodes.csv.

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Function normalize_curies has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

def normalize_curies(map_path: str, entries: List) -> List:
    """
    Normalize CURIEs baded on a map file.

    Given a SSSOM map file defining one or more

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Function multi_page_table_to_list has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

def multi_page_table_to_list(multi_page_table: Any) -> List[Dict]:
    """
    Convert multi-page tables to lists of dicts.

    Method to turn table data returned from tabula.io.read_pdf(),

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Function load_gene_info has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def load_gene_info(
        self, input_dir: str, output_dir: str, species_id: Optional[List] = None
    ) -> None:
        """Load mappings from NCBI gene_info (gene_info.gz).

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