Sign upLogin

sylvchev/mdla

View on GitHub
Star

Showing 119 of 119 total issues

Function _generate_testbed has 7 arguments (exceeds 4 allowed). Consider refactoring.
Open

def _generate_testbed(
Severity: Major
Found in examples/example_benchmark_performance.py - About 50 mins to fix

    Function _generate_testbed has 7 arguments (exceeds 4 allowed). Consider refactoring.
    Open

    def _generate_testbed(
    Severity: Major
    Found in examples/example_univariate.py - About 50 mins to fix

      Function _generate_testbed has 7 arguments (exceeds 4 allowed). Consider refactoring.
      Open

      def _generate_testbed(
      Severity: Major
      Found in examples/example_multivariate.py - About 50 mins to fix

        Function _generate_testbed has 7 arguments (exceeds 4 allowed). Consider refactoring.
        Open

        def _generate_testbed(
        Severity: Major
        Found in experiments/experiment_multivariate_recovering.py - About 50 mins to fix

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianlt97 = [median.get_ydata()[0] for n, median in enumerate(det97["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianwc = [median.get_ydata()[0] for n, median in enumerate(wassch["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

              med = [m.get_ydata()[0] for n, m in enumerate(bp["medians"])]
          Severity: Major
          Found in experiments/experiment_multivariate_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianlt99 = [median.get_ydata()[0] for n, median in enumerate(det99["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianhfs = [median.get_ydata()[0] for n, median in enumerate(hausfs["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

              medianof = [median.get_ydata()[0] for n, median in enumerate(ofun["medians"])]
          Severity: Major
          Found in examples/plot_bci_dict.py and 8 other locations - About 50 mins to fix
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianwfs = [median.get_ydata()[0] for n, median in enumerate(wassfs["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianbd = [median.get_ydata()[0] for n, median in enumerate(betad["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 108..108
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 2 locations. Consider refactoring.
          Open

              for i in range(len(r)):
        energy_residual[i] = norm(r[i], "fro")
          Severity: Minor
          Found in examples/plot_bci_dict.py and 1 other location - About 50 mins to fix
          examples/plot_bci_dict.py on lines 75..76

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 2 locations. Consider refactoring.
          Open

              for i in range(len(X)):
        energy_sample[i] = norm(X[i], "fro")
          Severity: Minor
          Found in examples/plot_bci_dict.py and 1 other location - About 50 mins to fix
          examples/plot_bci_dict.py on lines 72..73

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 9 locations. Consider refactoring.
          Open

                  medianhc = [median.get_ydata()[0] for n, median in enumerate(hausch["medians"])]
          Severity: Major
          Found in experiments/experiment_dictionary_recovering.py and 8 other locations - About 50 mins to fix
          examples/plot_bci_dict.py on lines 115..115
          experiments/experiment_dictionary_recovering.py on lines 73..73
          experiments/experiment_dictionary_recovering.py on lines 87..87
          experiments/experiment_dictionary_recovering.py on lines 118..118
          experiments/experiment_dictionary_recovering.py on lines 140..140
          experiments/experiment_dictionary_recovering.py on lines 150..150
          experiments/experiment_dictionary_recovering.py on lines 173..173
          experiments/experiment_multivariate_recovering.py on lines 77..77

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 36.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Function partial_fit has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
          Open

              def partial_fit(self, X, y=None, iter_offset=None):
        """Updates the model using the data in X as a mini-batch.

        Parameters
        ----------
          Severity: Minor
          Found in mdla/mdla.py - About 45 mins to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

          Avoid deeply nested control flow statements.
          Open

                              for e in range(s.shape[1]):
                        fs[:, e] = filtfilt(real(bb), real(ab), ns[:, e])
                    # decimate the signal
                    if decimation:
          Severity: Major
          Found in experiments/experiment_bci_competition.py - About 45 mins to fix

            Function _update_dict has 6 arguments (exceeds 4 allowed). Consider refactoring.
            Open

            def _update_dict(
            Severity: Minor
            Found in mdla/mdla.py - About 45 mins to fix

              Function _update_dict has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
              Open

              def _update_dict(
    dictionary,
    decomposition,
    residual,
    learning_rate=None,
              Severity: Minor
              Found in mdla/mdla.py - About 45 mins to fix

              Cognitive Complexity

              Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

              A method's cognitive complexity is based on a few simple rules:

              • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
              • Code is considered more complex for each "break in the linear flow of the code"
              • Code is considered more complex when "flow breaking structures are nested"

              Further reading

              Function fit has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
              Open

                  def fit(self, X, y=None):
        """Fit the model from data in X.

        Parameters
        ----------
              Severity: Minor
              Found in mdla/mdla.py - About 45 mins to fix

              Cognitive Complexity

              Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

              A method's cognitive complexity is based on a few simple rules:

              • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
              • Code is considered more complex for each "break in the linear flow of the code"
              • Code is considered more complex when "flow breaking structures are nested"

              Further reading

              Severity
              Category
              Status
              Source
              Language