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tripal/tripal_galaxy

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Showing 493 of 567 total issues

Line indented incorrectly; expected 4 spaces, found 2
Open

  ->execute()
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 4 spaces but found 6
Open

      '#type' => 'item',
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 6 spaces but found 8
Open

        '#markup' => t('Currently, no results exist for this job. The current state of the job is:  %state.', [
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

A comma should follow the last multiline array item. Found: ''
Open

              '<pre>' . $history_content['creating_job']['stderr'] . '</pre>'
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 8 spaces but found 10
Open

          'header' => TRUE,
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Inline comments must end in full-stops, exclamation marks, colons, question marks, or closing parentheses
Open

        // $submission and matching dataset ids and where visible == FALSE
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 10 spaces but found 12
Open

            'data' => 'Workflow ID',
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Line exceeds 80 characters; contains 98 characters
Open

       $proxy_url = tripal_galaxy_get_proxy_url($submission, $dataset, $node->uid, 'viewer-full');
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 6 spaces but found 8
Open

        $submission->workflow_id,
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Line indented incorrectly; expected 6 spaces, found 7
Open

       $proxy_url = tripal_galaxy_get_proxy_url($submission, $dataset, $node->uid, 'viewer-full');
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 4 spaces but found 6
Open

      $submission->start_time ? format_date($submission->start_time) : '',
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 8 spaces but found 10
Open

          'header' => TRUE,
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

A comma should follow the last multiline array item. Found: 'tripal-galaxy-submission-table'
Open

        'class' => 'tripal-galaxy-submission-table'
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Expected 1 space after closing parenthesis; found 9
Open

        foreach ($submission->errors['history_contents'] as $dc_history_content)
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Expected 1 space after closing parenthesis; found 11
Open

          if ($dc_history_content['id'] == $inner_elements['object']['id'])
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Line indented incorrectly; expected 6 spaces, found 7
Open

       $dataset = tripal_galaxy_get_dataset($submission, $dataset_id);
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Line indented incorrectly; expected 6 spaces, found 7
Open

       } */
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Inline comments must end in full-stops, exclamation marks, colons, question marks, or closing parentheses
Open

  // Get the defaults
Severity: Minor
Found in includes/tripal_galaxy.admin.inc by phpcodesniffer

Array indentation error, expected 6 spaces but found 8
Open

        '#type' => 'item',
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer

Array indentation error, expected 6 spaces but found 8
Open

        $submission->sid,
Severity: Minor
Found in includes/tripal_galaxy.results.inc by phpcodesniffer
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