Function Layout has 55 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Layout = function(conf, data) {
    var block_nb, gap, k, offset, ref, ref1, size, v;
    if (data == null) {
        circosJS.log(2, 'no layout data', '');
    }

Function draw_axes has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    draw_axes() {
        var space, len;
        len = this._scale_y.ticks().length;
        if (len >= 5) {
            space = 5;

Function hspStats has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  hspStats() {
    // An array to hold text or span elements that make up the line.
    let line = [];

    // Bit score and total score.

Function assign has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

    Object.assign = function(target) {
        'use strict';
        var index, key, source;
        if (target === null) {
            throw new TypeError('Cannot convert undefined or null to object');

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Function render has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.Core.prototype.render = function(ids, removeTracks) {
    var name, ref, ref1, renderAll, svg, track, trackStore, trackType, tracks, translated;
    if (typeof ids === 'undefined') {
        renderAll = true;
        ids = [];

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Function parseSpanValueData has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.parseSpanValueData = function(data, layoutSummary) {
    var groups, sample;
    if (!(data.length > 0)) {
        return {
            data: [],

Function data has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

            _.bind(function (query) {
                if (query_count < x) {
                    var label = query.id;
                    var len = query.length;
                    var item1 = {

Function parseChordData has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.parseChordData = function(data, layoutSummary) {
    var sample;
    sample = data[0];
    if ('source_id' in sample && 'source_start' in sample && 'source_end' && 'target_id' in sample && 'target_start' in sample && 'target_end' in sample) {
        data = data.map(function(datum) {

Function smartBorders has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Core.prototype.smartBorders = function() {
    var border, borders, currentBorder, l, layout, len, ref, store, track, trackId, trackType, width;
    width = this.conf.defaultTrackWidth;
    layout = {
        'in': this._layout.conf.innerRadius,

Function _render_polygons has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    _render_polygons() {
        var self = this;

        // Remove all existing child elements.
        this._svg.d3.selectAll('*').remove();

Function hspLines has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  hspLines() {
    // Space reserved for showing coordinates
    var width = this.width();

    // Number of residues we can draw per line is the total number of

Function exports has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

module.exports = (env, argv)  => {
    const pluginsPath = env.pluginsPath || './public/js/null_plugins';

    return {
        entry: {

Function renderDatabases has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderDatabases(category) {
    // Panel name and column width.
        var panelTitle = category[0].toUpperCase() + category.substring(1).toLowerCase() + ' databases';
        var columnClass = this.categories().length === 1 ? 'col-span-2' : '';

Function mixConf has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.mixConf = function(conf, defaultConf) {
    var key, newConf, value;
    newConf = {};
    for (key in defaultConf) {
        value = defaultConf[key];

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Function tableJSX has 47 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    tableJSX() {
        var hasName = _.every(this.props.query.hits, function (hit) {
            return hit.sciname !== '';
        });

Function render has 47 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Core.prototype.render = function(ids, removeTracks) {
    var name, ref, ref1, renderAll, svg, track, trackStore, trackType, tracks, translated;
    if (typeof ids === 'undefined') {
        renderAll = true;
        ids = [];

Function Histogram has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Histogram = function() {
    circosJS.Track.call(this);
    this.parseData = circosJS.parseSpanValueData;
    this.renderDatumContainer = (function(_this) {
        return function(instance, parentElement, name, data, conf) {

Function sharingPanelJSX has 45 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    sharingPanelJSX() {
        return (
            <div className="sharing-panel">
                <div className="section-header-sidebar">
                    <h4>

Function parseSpanStringData has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.parseSpanStringData = function(data, layoutSummary) {
    var groups, sample;
    sample = data[0];
    if ('parent_id' in sample && 'start' in sample && 'end' in sample && 'value' in sample) {
        data = data.map(function(datum) {

Function renderDatabases has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderDatabases(category) {
        // Panel name and column width.
        var panelTitle = category[0].toUpperCase() +
            category.substring(1).toLowerCase() + ' databases';
        var columnClass = this.categories().length === 1 ? 'col-md-12' :