Function renderDatabases has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderDatabases(category) {
        // Panel name and column width.
        var panelTitle = category[0].toUpperCase() +
            category.substring(1).toLowerCase() + ' databases';
        var columnClass = this.categories().length === 1 ? 'col-span-2' : '';

Function hspStats has 53 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  const hspStats = () => {
    // An array to hold text or span elements that make up the line.
    let line = [];

    // Bit score and total score.

Function assign has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

    Object.assign = function(target) {
        'use strict';
        var index, key, source;
        if (target === null) {
            throw new TypeError('Cannot convert undefined or null to object');

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Function render has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.Core.prototype.render = function(ids, removeTracks) {
    var name, ref, ref1, renderAll, svg, track, trackStore, trackType, tracks, translated;
    if (typeof ids === 'undefined') {
        renderAll = true;
        ids = [];

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Function exports has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

module.exports = (env, argv)  => {
    const pluginsPath = env.pluginsPath || './public/js/null_plugins';

    return {
        entry: {

Function ribbonV3 has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var ribbonV3 = function() {
    var source = d3_source, target = d3_target, radius = d3_svg_chordRadius, startAngle = d3_svg_arcStartAngle, endAngle = d3_svg_arcEndAngle;
    function chord(d, i) {
        var s = subgroup(this, source, d, i), t = subgroup(this, target, d, i);
        result = "M" + s.p0 + arc(s.r, s.p1, s.a1 - s.a0) + (equals(s, t) ? curve(s.p0) : curve(t.p0) + arc(t.r, t.p1, t.a1 - t.a0) + curve(s.p0)) + "Z";

Function smartBorders has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.Core.prototype.smartBorders = function() {
    var border, borders, currentBorder, l, layout, len, ref, store, track, trackId, trackType, width;
    width = this.conf.defaultTrackWidth;
    layout = {
        'in': this._layout.conf.innerRadius,

Function parseChordData has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

circosJS.parseChordData = function(data, layoutSummary) {
    var sample;
    sample = data[0];
    if ('source_id' in sample && 'source_start' in sample && 'source_end' && 'target_id' in sample && 'target_start' in sample && 'target_end' in sample) {
        data = data.map(function(datum) {

Function draw_axes has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    draw_axes() {
        var space, len;
        len = this._scale_y.ticks().length;
        if (len >= 5) {
            space = 5;

Function _render_polygons has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    _render_polygons() {
        var self = this;

        // Remove all existing child elements.
        this._svg.d3.selectAll('*').remove();

Function hspLines has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  const hspLines = () => {
    // Space reserved for showing coordinates
    const width = hspLinesWidth();

    // Number of residues we can draw per line is the total number of

Function renderDatabases has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderDatabases(category) {
    // Panel name and column width.
        var panelTitle = category[0].toUpperCase() + category.substring(1).toLowerCase() + ' databases';
        var columnClass = this.categories().length === 1 ? 'col-span-2' : '';

Function renderForm has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  renderForm() {
    const { email, agreeToTos } = this.state;
    const isSubmitDisabled = !agreeToTos;

    return(

Function renderButton has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    renderButton(method, multi, methods) {
        return (
            <div className="flex">
                <button
                    type="submit"

Function poll has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        function poll() {
            fetch(path)
                .then(response => {
                    // Handle HTTP status codes
                    if (!response.ok) throw response;

Function tableJSX has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    tableJSX() {
        var hasName = _.every(this.props.query.hits, function (hit) {
            return hit.sciname !== '';
        });

Function renderChords has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    this.renderChords = function(parentElement, name, conf, data, layout, ratio, getSource, getTarget) {
        var link, track;
        track = parentElement.append('g').attr('class', conf.colorPalette);
        link = track
            .selectAll('.chord')

Method retrieve has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

    def retrieve(accession, coords = nil)
      fail(
        InvalidSequenceIdError,
        "Invalid sequence id: #{accession}"
      ) unless accession =~ SequenceServer::BLAST::VALID_SEQUENCE_ID

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Function mixConf has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

circosJS.mixConf = function(conf, defaultConf) {
    var key, newConf, value;
    newConf = {};
    for (key in defaultConf) {
        value = defaultConf[key];

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Method spawn_cleanup has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

    def spawn_cleanup
      Thread.new do
        loop do
          now = Time.now
          finished_jobs = Job.all.select(&:done?)

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