KarrLab/datanator

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NameLines of codeMaintainabilityTest coverage
datanator/util/warning_util.py17
A
0 mins
A
100%
datanator/util/constants.py23
A
0 mins
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100%
datanator/util/base26.py39
D
2 days
A
100%
datanator/util/__init__.py7
A
0 mins
A
100%
datanator/schema_2/transform_metabolite_concentrations.py145
D
1 day
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100%
datanator/config/__init__.py1
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0 mins
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100%
datanator/_version.py1
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0 mins
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100%
datanator/__init__.py1
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0 mins
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100%
datanator/util/reaction_util.py45
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25 mins
A
96%
datanator/util/file_util.py207
A
2 hrs
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95%
datanator/data_source/intact_nosql.py196
C
1 day
A
93%
datanator/util/taxonomy_util.py158
A
1 hr
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92%
datanator/core/data_model.py490
F
4 days
A
92%
datanator/data_source/corum_nosql.py208
C
1 day
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90%
datanator/data_source/sabio_rk.py1,466
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3 wks
B
89%
datanator/util/molecule_util.py284
C
1 day
B
88%
datanator/data_source/pax_nosql.py204
F
4 days
B
82%
datanator/data_source/taxon_tree.py275
F
5 days
B
80%
datanator/util/rna_seq_util.py84
A
3 hrs
C
79%
datanator/util/chem_util.py110
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1 day
C
76%
datanator/data_source/brenda/reaction.py85
C
1 day
C
76%
datanator/data_source/rna_halflife/doi_10_1038_srep01318.py124
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1 day
C
76%
datanator/data_source/rna_halflife/doi_10_1186_s12864_016_3219_8.py232
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3 days
C
74%
datanator/data_source/rna_halflife/doi_10_1186_gb_2012_13_4_r30.py151
F
3 days
D
68%
datanator/data_source/sabio_rk_nosql.py1,090
F
1 wk
D
65%
datanator/data_source/rna_halflife/doi_10_1101_gr_131037_111.py138
D
2 days
D
65%
datanator/data_source/metabolite_concentration/query_demo.py55
A
45 mins
D
63%
datanator/__main__.py593
C
1 day
D
61%
datanator/data_source/rna_halflife/doi_10_1093_nar_gks1019.py126
D
2 days
D
60%
datanator/util/mongo_util.py67
A
1 hr
F
59%
datanator/data_source/ec.py104
B
4 hrs
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53%
datanator/data_source/sabio_reaction.py214
C
1 day
F
47%
datanator/config/core.py55
A
0 mins
F
47%
datanator/data_source/kegg_reaction_class.py170
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3 days
F
47%
datanator/util/rna_halflife_util.py122
C
1 day
F
41%
datanator/core/data_source.py480
D
2 days
F
39%
datanator/data_source/kegg_org_code.py146
B
5 hrs
F
38%
datanator/data_source/metabolites_meta_collection.py244
F
5 days
F
37%
datanator/elasticsearch_kl/batch_load.py238
F
4 days
F
37%
datanator/data_source/kegg_orthology.py238
D
2 days
F
35%
datanator/data_source/uniprot_nosql.py301
F
3 days
F
34%
datanator/schema_2/transform.py462
F
4 days
F
31%
datanator/data_source/gene_ortholog.py176
D
2 days
F
29%
datanator/data_source/rna_halflife/doi_10_1371_journal_pone_0059059.py115
D
2 days
F
29%
datanator/data_source/rna_halflife/doi_10_1093_nar_gkt1150.py99
D
2 days
F
29%
datanator/data_source/rna_halflife/order_by_ko.py202
D
2 days
F
28%
datanator/data_source/metabolite_nosql.py118
C
1 day
F
28%
datanator/util/index_collection.py131
D
1 day
F
25%
datanator/util/calc_tanimoto.py196
C
1 day
F
24%
datanator/data_source/metabolite_concentration/doi_10_1038_nchembio_2077.py347
F
6 days
F
22%