| lib/miga/cli/action/tax_set.rb | 54 | A 3 hrs |
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| lib/miga/cli/action/tax_index.rb | 42 | A 0 mins |
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| lib/miga/cli/action/tax_dist.rb | 108 | B 5 hrs |
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| lib/miga/cli/action/summary.rb | 59 | B 5 hrs |
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| lib/miga/cli/action/stats.rb | 42 | A 1 hr |
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| lib/miga/cli/action/seqcode_get.rb | 31 | A 0 mins |
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| lib/miga/cli/action/run.rb | 81 | B 5 hrs |
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| lib/miga/cli/action/rm.rb | 24 | A 55 mins |
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| lib/miga/cli/action/quality_wf.rb | 37 | A 35 mins |
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| lib/miga/cli/action/preproc_wf.rb | 40 | A 0 mins |
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| lib/miga/cli/action/option.rb | 57 | A 3 hrs |
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| lib/miga/cli/action/next_step.rb | 13 | A 0 mins |
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| lib/miga/cli/action/new.rb | 58 | A 0 mins |
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| lib/miga/cli/action/ncbi_get.rb | 35 | A 0 mins |
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| lib/miga/cli/action/ls.rb | 103 | B 4 hrs |
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| lib/miga/cli/action/ln.rb | 36 | A 0 mins |
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| lib/miga/cli/action/lair.rb | 98 | A 2 hrs |
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| lib/miga/cli/action/init/files_helper.rb | 109 | A 0 mins |
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| lib/miga/cli/action/init/daemon_helper.rb | 206 | C 7 hrs |
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| lib/miga/cli/action/init.rb | 236 | B 5 hrs |
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| lib/miga/cli/action/index_wf.rb | 25 | A 0 mins |
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| lib/miga/cli/action/gtdb_get.rb | 35 | A 0 mins |
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| lib/miga/cli/action/get.rb | 162 | C 7 hrs |
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| lib/miga/cli/action/generic.rb | 37 | A 0 mins |
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| lib/miga/cli/action/find.rb | 42 | A 0 mins |
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| lib/miga/cli/action/files.rb | 26 | A 45 mins |
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| lib/miga/cli/action/env.rb | 19 | A 0 mins |
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| lib/miga/cli/action/edit.rb | 33 | A 0 mins |
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| lib/miga/cli/action/download/seqcode.rb | 55 | A 3 hrs |
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| lib/miga/cli/action/download/ncbi.rb | 131 | A 1 hr |
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| lib/miga/cli/action/download/gtdb.rb | 50 | A 0 mins |
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| lib/miga/cli/action/download/base.rb | 187 | B 5 hrs |
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| lib/miga/cli/action/doctor/operations.rb | 135 | C 7 hrs |
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| lib/miga/cli/action/doctor/distances.rb | 112 | C 1 day |
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| lib/miga/cli/action/doctor/databases.rb | 32 | A 25 mins |
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| lib/miga/cli/action/doctor/base.rb | 86 | A 3 hrs |
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| lib/miga/cli/action/doctor.rb | 59 | A 0 mins |
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| lib/miga/cli/action/derep_wf.rb | 92 | A 1 hr |
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| lib/miga/cli/action/db.rb | 228 | B 4 hrs |
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| lib/miga/cli/action/date.rb | 11 | A 0 mins |
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| lib/miga/cli/action/daemon.rb | 82 | A 2 hrs |
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| lib/miga/cli/action/console.rb | 12 | A 0 mins |
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| lib/miga/cli/action/classify_wf.rb | 90 | A 3 hrs |
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| lib/miga/cli/action/browse/summary.html | |
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| lib/miga/cli/action/browse/style.css | |
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| lib/miga/cli/action/browse/redirect.html | |
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| lib/miga/cli/action/browse/layout.html | |
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| lib/miga/cli/action/browse/index.html | |
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| lib/miga/cli/action/browse/favicon-32.png | |
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| lib/miga/cli/action/browse/datasets.html | |
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