Function _initGfx has 162 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _initGfx() {
    const gfx = {
      width: this._container.clientWidth,
      height: this._container.clientHeight
    }

Function setColorVolTex has 160 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  setColorVolTex(colorMap, atomMap, atomWeightMap, visibilitySelector) {
    let i
    let idx
    const numVerts = this._position.length / 3
    const vertices = this._position

File MiewCLIHelp.js has 427 lines of code (exceeds 250 allowed). Consider refactoring.

Open

// import palettes from '../gfx/palettes' // TODO actualy, does nothing
// import settings from '../settings'

const modeIdDesc = {
  $help: [

Function _innerBuild has 155 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _innerBuild() {
    let ok
    const expandFactor = 1.2

    // performance test

File ContactSurface.js has 421 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import utils from '../../utils'
import { Vector3 } from 'three'

/**
 * Modifed from SpatialHash

File CIFParser.js has 421 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import Parser from './Parser'
import chem from '../../chem'
import StructuralElement from '../../chem/StructuralElement'
import readCIF from './readCIF'
import { isArray, isString } from 'lodash'

Function _buildSelectorFromSortedLists has a Cognitive Complexity of 40 (exceeds 5 allowed). Consider refactoring.

Open

  _buildSelectorFromSortedLists(atoms, residues, chains) {
    const complex = this._complex

    function optimizeList(list) {
      const result = []

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Function ObjectControls has 152 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function ObjectControls(object, objectPivot, camera, domElement, getAltObj) {
  EventDispatcher.call(this)
  const self = this

  this.object = object

File settings.js has 417 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import utils from './utils'
import EventDispatcher from './utils/EventDispatcher'
import { isEmpty, isString, get, set, merge, cloneDeep, filter } from 'lodash'

const VERSION = 0

Function _initReprListItemListeners has 148 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initReprListItemListeners = function (index) {
  const self = this
  const reprList = $(
    `${self._menuId} [data-panel-type=miew-menu-panel-representation] .miew-repr-list`
  )

Function buildGeoFromCorners has a Cognitive Complexity of 39 (exceeds 5 allowed). Consider refactoring.

Open

  buildGeoFromCorners(meshRes, vBoxMin, vBoxMax, corners, vCellStep, cube) {
    const arrSize = 12
    const cNumVerts = 8
    const numCells = meshRes - 1
    const side = meshRes

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Function _initOnSettingsChanged has 146 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _initOnSettingsChanged() {
    const on = (props, func) => {
      props = isArray(props) ? props : [props]
      props.forEach((prop) => {
        this.settings.addEventListener(`change:${prop}`, func)

Function setColorVolTex has a Cognitive Complexity of 38 (exceeds 5 allowed). Consider refactoring.

Open

  setColorVolTex(colorMap, atomMap, atomWeightMap, visibilitySelector) {
    let i
    let idx
    const numVerts = this._position.length / 3
    const vertices = this._position

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File options.js has 406 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import settings from './settings'
import utils from './utils'
import logger from './utils/logger'
import { isString, set, get, isArray, isEmpty } from 'lodash'

Function _updateReprList has 140 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._updateReprList = function () {
  const self = this

  function _createOptionsFromMVData(index, property, element, itemId) {
    const curRep = self._viewer.repGet(index)

Function createVoxels has a Cognitive Complexity of 37 (exceeds 5 allowed). Consider refactoring.

Open

  createVoxels() {
    let numAtomsRefs
    let rad
    const ATOM_VOXEL_REF_SCALE = 4.5

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File Smooth.js has 398 lines of code (exceeds 250 allowed). Consider refactoring.

Open

/*
Smooth.js version 0.1.7

Turn arrays into smooth functions.

File MMTFParser.js has 395 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import Parser from './Parser'
import chem from '../../chem'
import MMTF from '../../vendors/mmtf'
import StructuralElement from '../../chem/StructuralElement'
import { isArrayBuffer, isUndefined } from 'lodash'

File gfxutils.js has 394 lines of code (exceeds 250 allowed). Consider refactoring.

Open

/* eslint-disable no-magic-numbers */

import logger from '../utils/logger'
import CSS2DObject from './CSS2DObject'
import RCGroup from './RCGroup'

Function parse has 136 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    parse: function parse(input) {
      var self = this,
          stack = [0],
          tstack = [],
          vstack = [null],