| .gitignore | |
|
|
| .travis.yml | |
|
|
| Gemfile | |
|
|
| LICENSE | |
|
|
| README.md | |
|
|
| Rakefile | |
|
|
| bin/mspire | |
|
|
| mspire.gemspec | |
|
|
| obo/ims.obo | |
|
|
| obo/mod.obo | |
|
|
| obo/ms.obo | |
|
|
| obo/unit.obo | |
|
|
| schema/mzIdentML1.1.0.xsd | |
|
|
| schema/peptide_hit_qvalues.pqh.tsv | |
|
|
| lib/core_ext/array/in_groups.rb | 20 | A 1 hr |
|
| lib/core_ext/enumerable.rb | 10 |
|
|
| lib/cv.rb | 3 |
|
|
| lib/cv/param.rb | 40 |
|
|
| lib/cv/referenceable_param_group_ref.rb | 11 |
|
|
| lib/hash/inverse.rb | 9 | A 1 hr |
|
| lib/io/bookmark.rb | 9 |
|
|
| lib/merge.rb | 6 |
|
|
| lib/mspire.rb | 4 |
|
|
| lib/mspire/bin.rb | 40 | C 1 day |
|
| lib/mspire/commandline.rb | 33 | A 25 mins |
|
| lib/mspire/cv/obo.rb | 15 |
|
|
| lib/mspire/cv/param.rb | 27 | A 35 mins |
|
| lib/mspire/cv/paramable.rb | 110 | A 1 hr |
|
| lib/mspire/digester.rb | 116 | A 1 hr |
|
| lib/mspire/error_rate/decoy.rb | 26 |
|
|
| lib/mspire/error_rate/qvalue.rb | 59 | A 1 hr |
|
| lib/mspire/fasta.rb | 30 |
|
|
| lib/mspire/ident.rb | 12 |
|
|
| lib/mspire/ident/peptide.rb | 49 |
|
|
| lib/mspire/ident/peptide/db.rb | 25 |
|
|
| lib/mspire/ident/peptide/db/creator.rb | 206 | D 1 day |
|
| lib/mspire/ident/peptide/db/io.rb | 49 |
|
|
| lib/mspire/ident/peptide_hit.rb | 19 |
|
|
| lib/mspire/ident/peptide_hit/qvalue.rb | 43 |
|
|
| lib/mspire/ident/pepxml.rb | 87 | A 2 hrs |
|
| lib/mspire/ident/pepxml/modifications.rb | 47 |
|
|
| lib/mspire/ident/pepxml/msms_pipeline_analysis.rb | 44 |
|
|
| lib/mspire/ident/pepxml/msms_run_summary.rb | 61 | A 1 hr |
|
| lib/mspire/ident/pepxml/parameters.rb | 13 |
|
|
| lib/mspire/ident/pepxml/sample_enzyme.rb | 121 | A 1 hr |
|
| lib/mspire/ident/pepxml/search_database.rb | 34 |
|
|
| lib/mspire/ident/pepxml/search_hit.rb | 84 |
|
|
| lib/mspire/ident/pepxml/search_hit/modification_info.rb | 46 |
|
|
| lib/mspire/ident/pepxml/search_result.rb | 24 |
|
|
| lib/mspire/ident/pepxml/search_summary.rb | 57 | A 45 mins |
|