KarrLab/datanator

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NameLines of codeMaintainabilityTest coverage
datanator/data_source/pax_nosql.py204
F
4 days
B
82%
datanator/data_source/process_rna_seq/__init__.py2
A
0 mins
F
0%
datanator/data_source/process_rna_seq/command_line_core.py117
D
1 day
F
0%
datanator/data_source/process_rna_seq/core.py114
B
5 hrs
F
0%
datanator/data_source/process_rna_seq/download_cdna.py33
A
0 mins
F
0%
datanator/data_source/protein_aggregate.py212
D
2 days
F
19%
datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py289
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_mouse_global_quantification.py296
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py354
F
1 wk
datanator/data_source/protein_half_lives/victoria_parse_quantification_budding_yeast_proteome.py162
D
3 days
datanator/data_source/protein_half_lives/victoria_parse_yeast_global_proteome_turnover.py316
F
1 wk
datanator/data_source/protein_localization/database_demo.py37
A
35 mins
datanator/data_source/protein_localization/experimental.py53
B
4 hrs
datanator/data_source/protein_localization/justin_10.1038_msb.2011.38.py149
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1 hr
datanator/data_source/protein_localization/justin_parseGramPositiveJSONSchema.py47
B
6 hrs
datanator/data_source/protein_localization/justin_parse_subcellular_location.py97
C
7 hrs
datanator/data_source/protein_localization/parse_psortdb_experimental.py80
D
2 days
datanator/data_source/protein_localization/parse_psortdb_negative_wo_outer_membrane.py57
C
1 day
datanator/data_source/protein_localization/victoria_insert_archaea.py141
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2 wks
datanator/data_source/protein_localization/victoria_insert_experimental_protein.py168
D
3 days
datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py138
F
2 wks
datanator/data_source/protein_localization/victoria_insert_protein_atlas.py247
F
6 days
datanator/data_source/protein_modification/10_1093_nar_gkw1075.py68
A
2 hrs
datanator/data_source/protein_modification/pro.in.tsv
datanator/data_source/protein_modification/pro.monomers.csv
datanator/data_source/protein_modification/pro.py605
F
1 wk
datanator/data_source/rna_halflife/back_fill_gene_name.py18
A
3 hrs
datanator/data_source/rna_halflife/doi_10_1016_j_cell_2013_12_026.py87
C
1 day
datanator/data_source/rna_halflife/doi_10_1038_srep01318.py124
C
1 day
C
76%
datanator/data_source/rna_halflife/doi_10_1091_mbc_e11_01_0028.py97
B
5 hrs
datanator/data_source/rna_halflife/doi_10_1093_nar_gks1019.py126
D
2 days
D
60%
datanator/data_source/rna_halflife/doi_10_1093_nar_gkt1150.py99
D
2 days
F
29%
datanator/data_source/rna_halflife/doi_10_1101_gr_131037_111.py138
D
2 days
D
65%
datanator/data_source/rna_halflife/doi_10_1186_gb_2012_13_4_r30.py151
F
3 days
D
68%
datanator/data_source/rna_halflife/doi_10_1186_s12864_016_3219_8.py232
D
3 days
C
74%
datanator/data_source/rna_halflife/doi_10_1371_journal_pone_0059059.py115
D
2 days
F
29%
datanator/data_source/rna_halflife/order_by_ko.py202
D
2 days
F
28%
datanator/data_source/rna_localization/victoria_parse_LncAtlas.py223
F
3 days
datanator/data_source/rna_modification/rna_modification.py92
B
6 hrs
datanator/data_source/sabio_compound.py63
A
3 hrs
F
0%
datanator/data_source/sabio_reaction.py214
C
1 day
F
47%
datanator/data_source/sabio_rk.py1,466
F
3 wks
B
89%
datanator/data_source/sabio_rk_json_mongo.py652
F
5 days
F
0%
datanator/data_source/sabio_rk_nosql.py1,090
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1 wk
D
65%
datanator/data_source/sqlite_to_json.py47
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0 mins
F
0%
datanator/data_source/taxon_tree.py275
F
5 days
B
80%
datanator/data_source/uniprot_nosql.py301
F
3 days
F
34%
datanator/data_source/user_data/InputTemplate.xlsx
datanator/data_source/user_data/RNA-Seq_Experiment_Template/RNA-SeqMetadataTemplate.xlsx
datanator/data_source/user_data/RNA-Seq_Experiment_Template/samples/ProcessedRNA-SeqTemplate.xlsx