| datanator/elasticsearch_kl/batch_load.py | 238 | F 4 days | F 37% |
| datanator/parse_metabolite_concentration.py | 54 | B 4 hrs | F 0% |
| datanator/schema_2/__init__.py | 0 | A 0 mins | F 0% |
| datanator/schema_2/migrate_corum.py | 68 | A 0 mins | F 0% |
| datanator/schema_2/migrate_ec.py | 64 | A 0 mins | F 0% |
| datanator/schema_2/migrate_metabolite_concentration.py | 72 | A 0 mins | F 0% |
| datanator/schema_2/migrate_metabolites_meta.py | 82 | A 0 mins | F 0% |
| datanator/schema_2/migrate_taxon_tree.py | 96 | A 0 mins | F 0% |
| datanator/schema_2/migrate_uniprot.py | 89 | A 0 mins | F 0% |
| datanator/schema_2/transform.py | 462 | F 4 days | F 31% |
| datanator/schema_2/transform_metabolite_concentrations.py | 145 | D 1 day | A 100% |
| datanator/schema_2/transform_metabolites_meta.py | 235 | F 3 days | F 12% |
| datanator/util/__init__.py | 7 | A 0 mins | A 100% |
| datanator/util/base26.py | 39 | D 2 days | A 100% |
| datanator/util/build_util.py | 48 | A 0 mins | F 0% |
| datanator/util/calc_tanimoto.py | 196 | C 1 day | F 24% |
| datanator/util/chem_util.py | 110 | C 1 day | C 76% |
| datanator/util/constants.py | 23 | A 0 mins | A 100% |
| datanator/util/es.py.bak | |
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| datanator/util/file_util.py | 207 | A 2 hrs | A 95% |
| datanator/util/index_collection.py | 131 | D 1 day | F 25% |
| datanator/util/molecule_util.py | 284 | C 1 day | B 88% |
| datanator/util/mongo_util.py | 67 | A 1 hr | F 59% |
| datanator/util/reaction_util.py | 45 | A 25 mins | A 96% |
| datanator/util/rna_halflife_util.py | 122 | C 1 day | F 41% |
| datanator/util/rna_seq_util.py | 84 | A 3 hrs | C 79% |
| datanator/util/taxonomy_util.py | 158 | A 1 hr | A 92% |
| datanator/util/warning_util.py | 17 | A 0 mins | A 100% |
| docker-compose.yml | |
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| docker_builds/Flaskoffline | |
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| docker_builds/Karrlabdatanator | |
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| docker_builds/Mongocurl | |
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| docs/about.rst | |
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| docs/apm-server.yml | |
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| docs/brenda/Reactions_BKMS.tar.gz | |
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| docs/conf.py | 104 | A 0 mins |
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| docs/deployment.rst | |
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| docs/enzyme.dat | |
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| docs/filebeat.docker.yml | |
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| docs/index.rst | |
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| docs/installation.rst | |
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| docs/intro.rst | |
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| docs/metabolite_concentration/41589_2016_BFnchembio2077_MOESM585_ESM.xlsx | |
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| docs/metabolite_concentration/41589_2016_BFnchembio2077_MOESM586_ESM.xlsx | |
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| docs/metabolite_concentration/aaf2786-Hackett-SM-table-S9.xls | |
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| docs/metabolite_concentration/compounds.tsv.gz | |
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| docs/metabolite_concentration/mmc2.xlsx | |
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| docs/metabolite_concentration/mmc3.xlsx | |
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| docs/metabolites/6PG.json | |
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| docs/metabolites/ACCOATAXNEW.json | |
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