| lib/miga/cli/action/download/base.rb | 187 | B 5 hrs |
|
| lib/miga/cli/action/download/gtdb.rb | 50 | A 0 mins |
|
| lib/miga/cli/action/download/ncbi.rb | 131 | A 1 hr |
|
| lib/miga/cli/action/download/seqcode.rb | 55 | A 3 hrs |
|
| lib/miga/cli/action/edit.rb | 33 | A 0 mins |
|
| lib/miga/cli/action/env.rb | 19 | A 0 mins |
|
| lib/miga/cli/action/files.rb | 26 | A 45 mins |
|
| lib/miga/cli/action/find.rb | 42 | A 0 mins |
|
| lib/miga/cli/action/generic.rb | 37 | A 0 mins |
|
| lib/miga/cli/action/get.rb | 162 | C 7 hrs |
|
| lib/miga/cli/action/gtdb_get.rb | 35 | A 0 mins |
|
| lib/miga/cli/action/index_wf.rb | 25 | A 0 mins |
|
| lib/miga/cli/action/init.rb | 236 | B 5 hrs |
|
| lib/miga/cli/action/init/daemon_helper.rb | 206 | C 7 hrs |
|
| lib/miga/cli/action/init/files_helper.rb | 109 | A 0 mins |
|
| lib/miga/cli/action/lair.rb | 98 | A 2 hrs |
|
| lib/miga/cli/action/ln.rb | 36 | A 0 mins |
|
| lib/miga/cli/action/ls.rb | 103 | B 4 hrs |
|
| lib/miga/cli/action/ncbi_get.rb | 35 | A 0 mins |
|
| lib/miga/cli/action/new.rb | 58 | A 0 mins |
|
| lib/miga/cli/action/next_step.rb | 13 | A 0 mins |
|
| lib/miga/cli/action/option.rb | 57 | A 3 hrs |
|
| lib/miga/cli/action/preproc_wf.rb | 40 | A 0 mins |
|
| lib/miga/cli/action/quality_wf.rb | 37 | A 35 mins |
|
| lib/miga/cli/action/rm.rb | 24 | A 55 mins |
|
| lib/miga/cli/action/run.rb | 81 | B 5 hrs |
|
| lib/miga/cli/action/seqcode_get.rb | 31 | A 0 mins |
|
| lib/miga/cli/action/stats.rb | 42 | A 1 hr |
|
| lib/miga/cli/action/summary.rb | 59 | B 5 hrs |
|
| lib/miga/cli/action/tax_dist.rb | 108 | B 5 hrs |
|
| lib/miga/cli/action/tax_index.rb | 42 | A 0 mins |
|
| lib/miga/cli/action/tax_set.rb | 54 | A 3 hrs |
|
| lib/miga/cli/action/tax_test.rb | 74 | A 55 mins |
|
| lib/miga/cli/action/touch.rb | 11 | A 0 mins |
|
| lib/miga/cli/action/wf.rb | 262 | C 1 day |
|
| lib/miga/cli/base.rb | 96 | A 0 mins |
|
| lib/miga/cli/objects_helper.rb | 97 | C 1 day |
|
| lib/miga/cli/opt_helper.rb | 133 | C 7 hrs |
|
| lib/miga/common.rb | 89 | B 4 hrs | A 95% |
| lib/miga/common/base.rb | 33 | A 0 mins | A 100% |
| lib/miga/common/errors.rb | 10 | A 0 mins | A 100% |
| lib/miga/common/format.rb | 134 | C 1 day | A 100% |
| lib/miga/common/hooks.rb | 30 | A 25 mins | A 100% |
| lib/miga/common/net.rb | 107 | A 3 hrs | A 98% |
| lib/miga/common/path.rb | 20 | A 0 mins | A 100% |
| lib/miga/common/system_call.rb | 60 | A 3 hrs | A 97% |
| lib/miga/common/with_daemon.rb | 125 | A 2 hrs | A 97% |
| lib/miga/common/with_daemon_class.rb | 20 | A 35 mins | A 100% |
| lib/miga/common/with_option.rb | 63 | A 25 mins | A 100% |
| lib/miga/common/with_result.rb | 59 | A 2 hrs | A 94% |