Function projectTorus has 64 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function projectTorus(a, b) {
    const aIdx = itemSize * a
    const bIdx = itemSize * b
    const xa = posRad[aIdx]
    const ya = posRad[aIdx + 1]

Function exportCML has 64 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  exportCML() {
    const self = this

    function extractRotation(m) {
      const xAxis = new Vector3()

File IsosurfaceBuildNormals.js has 273 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import utils from '../../utils'
import { Vector3 } from 'three'

// suppress some JSHint warnings
/* jshint bitwise: false */

Function modifyExcludedFromGeo has 63 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  modifyExcludedFromGeo(
    side,
    probeSphereRadius,
    vBoxMin,
    vBoxMax,

Function constructor has 63 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  constructor(type, dimensions, box, vecSize, data, volumeInfo) {
    this._box = box.clone()
    this._dimVec = Math.max(Math.floor(vecSize || 1), 1)
    this._volumeInfo = volumeInfo

Function joinComplexes has 62 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  joinComplexes(complexes) {
    // clear target complex
    this._chains = []
    this._components = []
    this._helices = []

Function iterableToArrayLimit has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

var iterableToArrayLimit = createCommonjsModule(function (module) {
function _iterableToArrayLimit(arr, i) {
  var _i = arr == null ? null : typeof Symbol !== "undefined" && arr[Symbol.iterator] || arr["@@iterator"];
  if (_i == null) return;
  var _arr = [];

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Function iterableToArrayLimit has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

var iterableToArrayLimit = createCommonjsModule(function (module) {
function _iterableToArrayLimit(arr, i) {
  var _i = arr == null ? null : typeof Symbol !== "undefined" && arr[Symbol.iterator] || arr["@@iterator"];
  if (_i == null) return;
  var _arr = [];

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Function _updateIndices has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

  _updateIndices() {
    // Algorithm:
    // 1. Get plane vertices (from 3 to 6 vertices)
    // 2. Get "right" vector in plane
    // 3. Sort vertices using Graham-like method

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Function _traverseData has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

  _traverseData(dom) {
    function isArray(o) {
      return Object.prototype.toString.apply(o) === '[object Array]'
    }

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Function _fromArray has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

function _fromArray(entries) {
  repIndex = 0
  const opts = {}
  for (let i = 0, n = entries.length; i < n; ++i) {
    const /** string[] */ entry = entries[i]

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File Palette.js has 267 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import { assign } from 'lodash'

function clamp(x, a, b) {
  return x <= b ? (x < 0 ? 0 : x) : b
}

Function _updateIndices has 60 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _updateIndices() {
    // Algorithm:
    // 1. Get plane vertices (from 3 to 6 vertices)
    // 2. Get "right" vector in plane
    // 3. Sort vertices using Graham-like method

Function getMiewWithCli has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var getMiewWithCli = function getMiewWithCli(miewInstance) {
  var obj = Object.create(miewInstance);
  obj.script = function (script, _printCallback, _errorCallback) {
    MiewCLIParser.parser.yy.miew = obj;
    MiewCLIParser.parser.yy.echo = _printCallback;

Function test_match has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      test_match: function test_match(match, indexed_rule) {
        var token, lines, backup;
        if (this.options.backtrack_lexer) {
          backup = {
            yylineno: this.yylineno,

Function getMiewWithCli has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var getMiewWithCli = function getMiewWithCli(miewInstance) {
  var obj = Object.create(miewInstance);
  obj.script = function (script, _printCallback, _errorCallback) {
    MiewCLIParser.parser.yy.miew = obj;
    MiewCLIParser.parser.yy.echo = _printCallback;

Function test_match has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      test_match: function test_match(match, indexed_rule) {
        var token, lines, backup;
        if (this.options.backtrack_lexer) {
          backup = {
            yylineno: this.yylineno,

Function Menu has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function Menu(/** Node */ container, /** Miew */ viewer) {
  // Add proper DOM elements
  _.forEach($.parseHTML(menuHtml), (element) =>
    container.parentNode.appendChild(element)
  )

Function _parseAssemblyInfo has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _parseAssemblyInfo(mmtfData) {
    let i
    let j
    let k
    const assemblies = []

Function _renderFrame has 59 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _renderFrame(stereo) {
    const gfx = this._gfx
    const { renderer } = gfx

    renderer.getSize(this._size)